Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is ypfJ [H]
Identifier: 120609835
GI number: 120609835
Start: 1260793
End: 1261683
Strand: Direct
Name: ypfJ [H]
Synonym: Aave_1147
Alternate gene names: 120609835
Gene position: 1260793-1261683 (Clockwise)
Preceding gene: 120609834
Following gene: 120609836
Centisome position: 23.55
GC content: 69.25
Gene sequence:
>891_bases ATGAGATGGGAAGGCAATCGCGAATCGGACAACGTCGAGGACCGCCGTGACGAAGGCGGCGGCGGCGGTGGAGGCGGCTT TCCGGTGTTCGGGGGACGCAGCATCGGCATCGGCACCATCGTCGTCGCGCTGATCGGCGGATGGGTGTTCGGCATCAATC CCCTGACCATCCTCGGCCTGCTGAGCGGCGGCGGGCCGCCCGCCCACGTGCAGACCCAGCAGGCCCCGGCCCACCGGCCG CCGGCGGACGACACCATGGGCCGGTTCGTTTCCACCGTGCTCGCGGACACCGAAGACGTCTGGGCCGATGTCTTCCGCCA GAACGGCTCGACCTACCAGAACCCGCGGCTCGTCCTGTTCCGCGGCACCACGCCCACCGCCTGCGGCCGGGGCGAATCGG CCATGGGCCCGTTCTACTGCCCGGCGGACCGCAAGGTCTATATCGACCTGGGTTTCTACGAGACGCTCAAGAACCGGCTC GGCGCCCCGGGCGACTTCGCCCAGGCCTACGTGATCGCGCACGAAGTGGGCCACCACGTGCAGAACCTCCTGGGCATCAG CGGCCGGGTGGACCAGATGCGCGGCCGGGTGAGCCAGGTGGAATACAACCATCTCTCCGTGCGCCTGGAACTGCAGGCCG ACTGCTTCGCGGGCGTCTGGGCGCACCATGCGCAGAACGCGCGGCAGATCCTGGAGCAGGGCGACGTGGAAGAGGCCATG AACGCCGCCGCCAGGATCGGCGACGACGCGCTGCAGCGCGCAGCGGGCCGAGCGGTCGTCCCGGACAGTTTCACCCACGG CTCCAGCGCCCAGCGCCAGCGCTGGTTCCAGACCGGCCTGCAGGGCGGAAGCATCAAGGCCTGCGATACCTTCTCTGTCA GGAGCCTTTGA
Upstream 100 bases:
>100_bases CGACGCCGGATGGGCGCCGTCCGCCGGCCTCGAGGCCCGCTGAGACCACCCCGGCCGGCGTACCATCACGCACTGGCATG GATTTTTCAGGGTGCGCACG
Downstream 100 bases:
>100_bases ATCCAAGGGTTTGCTGCTATTGAAAATGCAGCAAAAAATGCCACCCCGCCGGCCGTGCGGACGTTCCCGTGGCCTCGGGG AAGGGCTGGTGCGACAATAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 296; Mature: 296
Protein sequence:
>296_residues MRWEGNRESDNVEDRRDEGGGGGGGGFPVFGGRSIGIGTIVVALIGGWVFGINPLTILGLLSGGGPPAHVQTQQAPAHRP PADDTMGRFVSTVLADTEDVWADVFRQNGSTYQNPRLVLFRGTTPTACGRGESAMGPFYCPADRKVYIDLGFYETLKNRL GAPGDFAQAYVIAHEVGHHVQNLLGISGRVDQMRGRVSQVEYNHLSVRLELQADCFAGVWAHHAQNARQILEQGDVEEAM NAAARIGDDALQRAAGRAVVPDSFTHGSSAQRQRWFQTGLQGGSIKACDTFSVRSL
Sequences:
>Translated_296_residues MRWEGNRESDNVEDRRDEGGGGGGGGFPVFGGRSIGIGTIVVALIGGWVFGINPLTILGLLSGGGPPAHVQTQQAPAHRP PADDTMGRFVSTVLADTEDVWADVFRQNGSTYQNPRLVLFRGTTPTACGRGESAMGPFYCPADRKVYIDLGFYETLKNRL GAPGDFAQAYVIAHEVGHHVQNLLGISGRVDQMRGRVSQVEYNHLSVRLELQADCFAGVWAHHAQNARQILEQGDVEEAM NAAARIGDDALQRAAGRAVVPDSFTHGSSAQRQRWFQTGLQGGSIKACDTFSVRSL >Mature_296_residues MRWEGNRESDNVEDRRDEGGGGGGGGFPVFGGRSIGIGTIVVALIGGWVFGINPLTILGLLSGGGPPAHVQTQQAPAHRP PADDTMGRFVSTVLADTEDVWADVFRQNGSTYQNPRLVLFRGTTPTACGRGESAMGPFYCPADRKVYIDLGFYETLKNRL GAPGDFAQAYVIAHEVGHHVQNLLGISGRVDQMRGRVSQVEYNHLSVRLELQADCFAGVWAHHAQNARQILEQGDVEEAM NAAARIGDDALQRAAGRAVVPDSFTHGSSAQRQRWFQTGLQGGSIKACDTFSVRSL
Specific function: Unknown
COG id: COG2321
COG function: function code R; Predicted metalloprotease
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788819, Length=293, Percent_Identity=52.901023890785, Blast_Score=294, Evalue=4e-81,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007343 [H]
Pfam domain/function: PF04228 Zn_peptidase [H]
EC number: NA
Molecular weight: Translated: 31860; Mature: 31860
Theoretical pI: Translated: 6.60; Mature: 6.60
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRWEGNRESDNVEDRRDEGGGGGGGGFPVFGGRSIGIGTIVVALIGGWVFGINPLTILGL CCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH LSGGGPPAHVQTQQAPAHRPPADDTMGRFVSTVLADTEDVWADVFRQNGSTYQNPRLVLF HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCEEEEE RGTTPTACGRGESAMGPFYCPADRKVYIDLGFYETLKNRLGAPGDFAQAYVIAHEVGHHV ECCCCCCCCCCCCCCCCEECCCCCEEEEECCHHHHHHHHCCCCCCHHHHHHHHHHHHHHH QNLLGISGRVDQMRGRVSQVEYNHLSVRLELQADCFAGVWAHHAQNARQILEQGDVEEAM HHHHCCCCCHHHHHCHHHHEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHH NAAARIGDDALQRAAGRAVVPDSFTHGSSAQRQRWFQTGLQGGSIKACDTFSVRSL HHHHHCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCC >Mature Secondary Structure MRWEGNRESDNVEDRRDEGGGGGGGGFPVFGGRSIGIGTIVVALIGGWVFGINPLTILGL CCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH LSGGGPPAHVQTQQAPAHRPPADDTMGRFVSTVLADTEDVWADVFRQNGSTYQNPRLVLF HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCEEEEE RGTTPTACGRGESAMGPFYCPADRKVYIDLGFYETLKNRLGAPGDFAQAYVIAHEVGHHV ECCCCCCCCCCCCCCCCEECCCCCEEEEECCHHHHHHHHCCCCCCHHHHHHHHHHHHHHH QNLLGISGRVDQMRGRVSQVEYNHLSVRLELQADCFAGVWAHHAQNARQILEQGDVEEAM HHHHCCCCCHHHHHCHHHHEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHH NAAARIGDDALQRAAGRAVVPDSFTHGSSAQRQRWFQTGLQGGSIKACDTFSVRSL HHHHHCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]