Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is yegE [H]

Identifier: 120609817

GI number: 120609817

Start: 1235598

End: 1237826

Strand: Direct

Name: yegE [H]

Synonym: Aave_1127

Alternate gene names: 120609817

Gene position: 1235598-1237826 (Clockwise)

Preceding gene: 120609815

Following gene: 120609818

Centisome position: 23.08

GC content: 74.16

Gene sequence:

>2229_bases
ATGAGCGCGCCGCCCGCTCCGCCCGCGGTGGCCGGGCGCGGCCGCATGCGTGCCTTCGCCACGGTGCACGACGGGCGCGA
GGCGCACTGGCACATGCCCGGTCCGCTGGTGCTGCGGATGATCGCCGCTGCCGTGGCCGCCGTGCTGCTGGCGGGAGGAC
TGGCCGCGTGGATGGTGGCGCGCTCCGCCCAGCACGAGGCGCTGCAGCGCCTCATGGAGCGGCAGACCGACGAAGTCGAA
GCGGTCGCGCTGCTGCTGTCGGGCAAGATCGAGCAGAACCAGCGCGTGCTGGCCACGCTGGCCGAAAGCATCCCCGCCCC
GCTGCCCGAGGCGCCCGGAGCGCTCGATGCCCTGCTGGGCCAGGGCCTGCCCGCGGCGCGCTTCTTCGACGCCCTGCAGA
TCGCGCGGCAGGACGGCAGCCTGGGTCTGTATTGGCAGAACGGCCGGCTGCATCCCGGCGCGCAACTCGATCCTGCCGAG
CGCGACCAGTTGCGGCGCACGCTGCTGGAAGGCAAGCCGCTCCTGTCCGGCGTGATCGGCAACGGCCCCGCCGACGGGCG
CATCATGTTCAGCCTGCCCTTGCGCACGGCCGGAGACGGCGGCGGCGTGCAGGGTGCGCTGGGCGCCACGCTGCGGCTGC
AGTCGCAGGGGCTGTTGCCGCCATCGATGGCGCTGCCGGCACGGGCCGGATCGAGGCTGGTGGTCTTCGCACGCGATGGA
ACCATCCTCGCGCATCCCGACCCGGCCCGCGTGCTCGGGCAGGTGCGGGACGAGGCCGGGCTGGCGCAGGTGTACGAGCG
GGCGCTGCAGGGCGGACAGGCGGCAGTGGCCGGGCGCGGATTCTCGGACGTGGTCGCCGGGCAGGTGGTGAGCGTGGCGG
GCGTGCCGCTGCCCCAGTGGCTGGTGGCGCGCGTGAGCGATGCGCGCGCCTCGGATCTGGACCTGCTGGCCGGCGGTGGC
CAGCGTGGACTGGGGGGCGCCGTGGCCGCCACGGCCTGCGCGGCGCTGCTGGCGGCCATCGCCATCGCCGTGCTGGCCCA
GCCCCTGGCACGGCTGTGCCGGCGCGTGGCGCGCGCCCATCCCACGGGCATCGCCGACGATGCGCCCTGGCCGGCGGGAG
CCGGCGAGGTGGACGCTCTCGCGCAGGTCTGCCGGGCGCTGGTGGACGATTGCCGCATCGCCCGGCACCGGGCGGGCGTG
TTGCAGGACCAGTTCCAGGCCGTGCTGGACCATGCCCCCGCCGGCATCGTCATCACCCGCGCCGGGCAGATGGTGGTGGT
CGGGCTGGAGGCCTGCCGCCTGCTCGGCTATGAACCGCATGAACTGCAGGGGCAGCCCGCGCGGCTGCTCTACGCGAGCG
ATGCGGCCTATGCCGAGCTGGGGCGGCGTGTGCGTGCCGAGTTCGCCGCGCACGGTGCCTTCGACGGAGATGTCTGCTTC
GTCCGCAAGGACGGCGGAGCGGTCTGGGCGCGGGTGCTCGGCCGTGCCGTGCGCGACGGCGCCGTGGCGGAAGGGGGCGG
CACGGTATGGATGCTGGAGGACCTGACGGCAGCGCGTGAGGCGCGGCGCCAGCAGGACTGGCCCGCGGGGCATGATTCCC
TCACGCAGCTCGCCAACCGCGACGCGTTCCAGCAGCGCCTGCACGCCCTGCTCGCGGACCATGCGAAACGCTCCATGGTG
GTGCGCGCCTCGGTCCGAAATGGTGCATTGCCTTCGGAGTCCCTGCAGGAGTCCCCCGGGCGTGCGGAGGCCGTGGCACC
ACCTCCTGCACCGGAATCGGGCGTTTTGCTGTTCCTCGATCTCGACCATTTCACGGTGGTGAACGCGATCGCCGGGCACG
ACGCGGGCGACGACGTGCTGCGCCACGTGGGCCGGCTCATCGAGACGCAGGTGCGGCATGTGGGGTGGGCCGCCCGGCTG
GGCGGGGACGAGTTCGCGGTGGTGCTGCCCGGCTGCGCCCTGCCGCGTGGCCTGGCGATCGCCACCCAGCTCTGCGCGGC
CGTGCACGCCTGGGAGCCGGCCTATGCCGGCCGCACCTATACGCTGGGCGTGAGCATCGGGCTCGTGCCGCTCGATGGCG
GCGCCTACGACGTGCCCACCGTGCTGCATGCGGCCGACATGGCCTGCTACGAAGCCAAGCGCGCGGGCCGCAACCGCGTC
GAGGTGCGGTGGCTGCGGCCGGGCCGTCCGCACGAGAGCACGACGGCGGACGGCGACGTGCAGGCCTGA

Upstream 100 bases:

>100_bases
CTGTCCCGGGTATGTATTCCCCCGCAACGAACCGCCCGCTCCGCATGCTCCTTCGCTCCCGCTGTTCCCGGCCGATTCGC
GCGCTGAGCGTGGGGGGCGC

Downstream 100 bases:

>100_bases
CCACTGGCGCGGCAGCAGGGCCTCCCGAGCCTTGCCGCGGAGCGGCCGTCTTGTCCATGACGGCGGTGGAAACATTCTGT
TCTTCGGAACACGACAACAT

Product: PAS/PAC sensor-containing diguanylate cyclase

Products: NA

Alternate protein names: DGC [H]

Number of amino acids: Translated: 742; Mature: 741

Protein sequence:

>742_residues
MSAPPAPPAVAGRGRMRAFATVHDGREAHWHMPGPLVLRMIAAAVAAVLLAGGLAAWMVARSAQHEALQRLMERQTDEVE
AVALLLSGKIEQNQRVLATLAESIPAPLPEAPGALDALLGQGLPAARFFDALQIARQDGSLGLYWQNGRLHPGAQLDPAE
RDQLRRTLLEGKPLLSGVIGNGPADGRIMFSLPLRTAGDGGGVQGALGATLRLQSQGLLPPSMALPARAGSRLVVFARDG
TILAHPDPARVLGQVRDEAGLAQVYERALQGGQAAVAGRGFSDVVAGQVVSVAGVPLPQWLVARVSDARASDLDLLAGGG
QRGLGGAVAATACAALLAAIAIAVLAQPLARLCRRVARAHPTGIADDAPWPAGAGEVDALAQVCRALVDDCRIARHRAGV
LQDQFQAVLDHAPAGIVITRAGQMVVVGLEACRLLGYEPHELQGQPARLLYASDAAYAELGRRVRAEFAAHGAFDGDVCF
VRKDGGAVWARVLGRAVRDGAVAEGGGTVWMLEDLTAAREARRQQDWPAGHDSLTQLANRDAFQQRLHALLADHAKRSMV
VRASVRNGALPSESLQESPGRAEAVAPPPAPESGVLLFLDLDHFTVVNAIAGHDAGDDVLRHVGRLIETQVRHVGWAARL
GGDEFAVVLPGCALPRGLAIATQLCAAVHAWEPAYAGRTYTLGVSIGLVPLDGGAYDVPTVLHAADMACYEAKRAGRNRV
EVRWLRPGRPHESTTADGDVQA

Sequences:

>Translated_742_residues
MSAPPAPPAVAGRGRMRAFATVHDGREAHWHMPGPLVLRMIAAAVAAVLLAGGLAAWMVARSAQHEALQRLMERQTDEVE
AVALLLSGKIEQNQRVLATLAESIPAPLPEAPGALDALLGQGLPAARFFDALQIARQDGSLGLYWQNGRLHPGAQLDPAE
RDQLRRTLLEGKPLLSGVIGNGPADGRIMFSLPLRTAGDGGGVQGALGATLRLQSQGLLPPSMALPARAGSRLVVFARDG
TILAHPDPARVLGQVRDEAGLAQVYERALQGGQAAVAGRGFSDVVAGQVVSVAGVPLPQWLVARVSDARASDLDLLAGGG
QRGLGGAVAATACAALLAAIAIAVLAQPLARLCRRVARAHPTGIADDAPWPAGAGEVDALAQVCRALVDDCRIARHRAGV
LQDQFQAVLDHAPAGIVITRAGQMVVVGLEACRLLGYEPHELQGQPARLLYASDAAYAELGRRVRAEFAAHGAFDGDVCF
VRKDGGAVWARVLGRAVRDGAVAEGGGTVWMLEDLTAAREARRQQDWPAGHDSLTQLANRDAFQQRLHALLADHAKRSMV
VRASVRNGALPSESLQESPGRAEAVAPPPAPESGVLLFLDLDHFTVVNAIAGHDAGDDVLRHVGRLIETQVRHVGWAARL
GGDEFAVVLPGCALPRGLAIATQLCAAVHAWEPAYAGRTYTLGVSIGLVPLDGGAYDVPTVLHAADMACYEAKRAGRNRV
EVRWLRPGRPHESTTADGDVQA
>Mature_741_residues
SAPPAPPAVAGRGRMRAFATVHDGREAHWHMPGPLVLRMIAAAVAAVLLAGGLAAWMVARSAQHEALQRLMERQTDEVEA
VALLLSGKIEQNQRVLATLAESIPAPLPEAPGALDALLGQGLPAARFFDALQIARQDGSLGLYWQNGRLHPGAQLDPAER
DQLRRTLLEGKPLLSGVIGNGPADGRIMFSLPLRTAGDGGGVQGALGATLRLQSQGLLPPSMALPARAGSRLVVFARDGT
ILAHPDPARVLGQVRDEAGLAQVYERALQGGQAAVAGRGFSDVVAGQVVSVAGVPLPQWLVARVSDARASDLDLLAGGGQ
RGLGGAVAATACAALLAAIAIAVLAQPLARLCRRVARAHPTGIADDAPWPAGAGEVDALAQVCRALVDDCRIARHRAGVL
QDQFQAVLDHAPAGIVITRAGQMVVVGLEACRLLGYEPHELQGQPARLLYASDAAYAELGRRVRAEFAAHGAFDGDVCFV
RKDGGAVWARVLGRAVRDGAVAEGGGTVWMLEDLTAAREARRQQDWPAGHDSLTQLANRDAFQQRLHALLADHAKRSMVV
RASVRNGALPSESLQESPGRAEAVAPPPAPESGVLLFLDLDHFTVVNAIAGHDAGDDVLRHVGRLIETQVRHVGWAARLG
GDEFAVVLPGCALPRGLAIATQLCAAVHAWEPAYAGRTYTLGVSIGLVPLDGGAYDVPTVLHAADMACYEAKRAGRNRVE
VRWLRPGRPHESTTADGDVQA

Specific function: Cyclic-di-GMP is a second messenger which controls cell surface-associated traits in bacteria [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1788381, Length=354, Percent_Identity=27.9661016949153, Blast_Score=128, Evalue=1e-30,
Organism=Escherichia coli, GI87082007, Length=197, Percent_Identity=31.9796954314721, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI1786584, Length=174, Percent_Identity=31.0344827586207, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI145693134, Length=128, Percent_Identity=35.9375, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1787802, Length=147, Percent_Identity=33.3333333333333, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787262, Length=218, Percent_Identity=28.4403669724771, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR007895
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF05231 MASE1; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: =2.7.7.65 [H]

Molecular weight: Translated: 77804; Mature: 77673

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAPPAPPAVAGRGRMRAFATVHDGREAHWHMPGPLVLRMIAAAVAAVLLAGGLAAWMVA
CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RSAQHEALQRLMERQTDEVEAVALLLSGKIEQNQRVLATLAESIPAPLPEAPGALDALLG
HHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHH
QGLPAARFFDALQIARQDGSLGLYWQNGRLHPGAQLDPAERDQLRRTLLEGKPLLSGVIG
CCCCHHHHHHHHHHHHCCCCEEEEEECCEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCC
NGPADGRIMFSLPLRTAGDGGGVQGALGATLRLQSQGLLPPSMALPARAGSRLVVFARDG
CCCCCCEEEEEECCCCCCCCCCCCHHCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEECC
TILAHPDPARVLGQVRDEAGLAQVYERALQGGQAAVAGRGFSDVVAGQVVSVAGVPLPQW
EEEECCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHCCCCCHHH
LVARVSDARASDLDLLAGGGQRGLGGAVAATACAALLAAIAIAVLAQPLARLCRRVARAH
HHHHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PTGIADDAPWPAGAGEVDALAQVCRALVDDCRIARHRAGVLQDQFQAVLDHAPAGIVITR
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
AGQMVVVGLEACRLLGYEPHELQGQPARLLYASDAAYAELGRRVRAEFAAHGAFDGDVCF
CCCEEEEEHHHHHHCCCCCHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEE
VRKDGGAVWARVLGRAVRDGAVAEGGGTVWMLEDLTAAREARRQQDWPAGHDSLTQLANR
EEECCCHHHHHHHHHHHHCCCEECCCCEEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHH
DAFQQRLHALLADHAKRSMVVRASVRNGALPSESLQESPGRAEAVAPPPAPESGVLLFLD
HHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCEEEEEE
LDHFTVVNAIAGHDAGDDVLRHVGRLIETQVRHVGWAARLGGDEFAVVLPGCALPRGLAI
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHCCCCCEEEEECCCCCCCHHHH
ATQLCAAVHAWEPAYAGRTYTLGVSIGLVPLDGGAYDVPTVLHAADMACYEAKRAGRNRV
HHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCE
EVRWLRPGRPHESTTADGDVQA
EEEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SAPPAPPAVAGRGRMRAFATVHDGREAHWHMPGPLVLRMIAAAVAAVLLAGGLAAWMVA
CCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RSAQHEALQRLMERQTDEVEAVALLLSGKIEQNQRVLATLAESIPAPLPEAPGALDALLG
HHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHH
QGLPAARFFDALQIARQDGSLGLYWQNGRLHPGAQLDPAERDQLRRTLLEGKPLLSGVIG
CCCCHHHHHHHHHHHHCCCCEEEEEECCEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCC
NGPADGRIMFSLPLRTAGDGGGVQGALGATLRLQSQGLLPPSMALPARAGSRLVVFARDG
CCCCCCEEEEEECCCCCCCCCCCCHHCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEECC
TILAHPDPARVLGQVRDEAGLAQVYERALQGGQAAVAGRGFSDVVAGQVVSVAGVPLPQW
EEEECCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHCCCCCHHH
LVARVSDARASDLDLLAGGGQRGLGGAVAATACAALLAAIAIAVLAQPLARLCRRVARAH
HHHHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PTGIADDAPWPAGAGEVDALAQVCRALVDDCRIARHRAGVLQDQFQAVLDHAPAGIVITR
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
AGQMVVVGLEACRLLGYEPHELQGQPARLLYASDAAYAELGRRVRAEFAAHGAFDGDVCF
CCCEEEEEHHHHHHCCCCCHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEE
VRKDGGAVWARVLGRAVRDGAVAEGGGTVWMLEDLTAAREARRQQDWPAGHDSLTQLANR
EEECCCHHHHHHHHHHHHCCCEECCCCEEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHH
DAFQQRLHALLADHAKRSMVVRASVRNGALPSESLQESPGRAEAVAPPPAPESGVLLFLD
HHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCEEEEEE
LDHFTVVNAIAGHDAGDDVLRHVGRLIETQVRHVGWAARLGGDEFAVVLPGCALPRGLAI
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHCCCCCEEEEECCCCCCCHHHH
ATQLCAAVHAWEPAYAGRTYTLGVSIGLVPLDGGAYDVPTVLHAADMACYEAKRAGRNRV
HHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCE
EVRWLRPGRPHESTTADGDVQA
EEEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503; 6094528; 7984428 [H]