Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is 120609802
Identifier: 120609802
GI number: 120609802
Start: 1216926
End: 1217894
Strand: Reverse
Name: 120609802
Synonym: Aave_1111
Alternate gene names: NA
Gene position: 1217894-1216926 (Counterclockwise)
Preceding gene: 120609803
Following gene: 120609801
Centisome position: 22.75
GC content: 69.87
Gene sequence:
>969_bases ATGACCGCACCGCCGCTCTACGACGCCACCCTGCCCTACCCCCGCGACCTCGTGGGCTACGGCCGCAACCCGCCGCACGC CCGCTGGCCCGGCGGCGCGCGCATCGCCGTGCAGTTCGTGCTGAACTACGAGGAAGGCGGCGAGAACGCCACCCTGCACG GCGACGCGGGCAGCGAGCAGTTCCTCTCGGAGATGTTCAACCCGGCCAGCTACCCCGACCGCCACATCAGCATGGAAGGC ATCTACGAGTACGGCTCGCGCGCGGGTGTATGGCGCCTGCTGCGCGAGTTCGAGCGGCGCGGGCTGCCGCTCACCGTCTT CGGCGTGGCGACGGCGCTGCAGCGCCACCCGGAAGTGACCGCCGCCTTCGCCGAGCTGGGCCACGACATCGCCTGCCACG GCCTGAAGTGGATCCACTACCAGAACGTGCCCGAGGACGTGGAGCGCGCGCACATGGCCGAGGCCATGGACATCATCCGG CGCCTCACGGGCGAACGCCCGCTGGGCTGGTACACCGGCCGCGACAGCCCCAACACCCGCCGCCTGGTGGCCGACTACGG CGGCTTCGCCTACGACAGCGACTACTACGGCGACGACCTGCCCTTCTGGATGAAGGTGCGCAAGACCGACGGCACCGATG CCATGCAGCTCATCGTGCCCTACACGCTCGACTGCAACGACATGCGCTTCGCGCTGCCCCAGGGCTACTCGCACGCCGAC CCGTTCTTCCAGTACATGAAGGACACCTTCGACGCGCTCTATGCCGAAGGCGATCCGGCCGGCGACGACCGGCCCAAGAT GATGAGCATCGGCATGCACTGCCGCCTGCTGGGTCGCCCGGGCCGCATCACCGCGCTGCAGCGCTTCCTCGACCACGTCC AGCGCCACGAGCACGTCTGGGTGTGCCGCCGCATCGACCTCGCGCGCCACTGGGCCGCGACCCACCCCTGCCCGAAGGTG ACGCCATGA
Upstream 100 bases:
>100_bases ACGTGGAGGCCAGCCTGGCCTTCGACCGCGCGCATCCGCCCAACGAACTCTCCCGCGCCCTGTCCTGACTTCCCACCTTC TTCCAAGCCGATCCACCGAC
Downstream 100 bases:
>100_bases CCCTGACCCTGGACCAGCTCAACGCCGCGCCCGCGGACGAAGCCGCGCGGATGCTGGACGGCCTGTACGAGCATTCGCCC TGGATCGCTGAAAGCGCACT
Product: polysaccharide deacetylase
Products: NA
Alternate protein names: Urate Catabolism Protein; Polysaccharide Deacetylase Family Protein; Chitin Deacetylase; Xylanase/Chitin Deacetylase; Chitooligosaccharide Deacetylase; Polysaccharide Deacetylase Family; Polysaccharide Deacetylase Domain Protein; Chitooligosaccharide Deacetylase Protein; Uricase; Saccharide Deacetylase Slightly; Polysaccharide Deacetylase Protein Pda4B; Hydrolase; Carbohydrate Esterase Family 4 Domain Protein; Chitinase; Deacetylase Protein; Polysaccharide Deacetylase Domain-Containing Protein; Allantoinase; Deacetylase
Number of amino acids: Translated: 322; Mature: 321
Protein sequence:
>322_residues MTAPPLYDATLPYPRDLVGYGRNPPHARWPGGARIAVQFVLNYEEGGENATLHGDAGSEQFLSEMFNPASYPDRHISMEG IYEYGSRAGVWRLLREFERRGLPLTVFGVATALQRHPEVTAAFAELGHDIACHGLKWIHYQNVPEDVERAHMAEAMDIIR RLTGERPLGWYTGRDSPNTRRLVADYGGFAYDSDYYGDDLPFWMKVRKTDGTDAMQLIVPYTLDCNDMRFALPQGYSHAD PFFQYMKDTFDALYAEGDPAGDDRPKMMSIGMHCRLLGRPGRITALQRFLDHVQRHEHVWVCRRIDLARHWAATHPCPKV TP
Sequences:
>Translated_322_residues MTAPPLYDATLPYPRDLVGYGRNPPHARWPGGARIAVQFVLNYEEGGENATLHGDAGSEQFLSEMFNPASYPDRHISMEG IYEYGSRAGVWRLLREFERRGLPLTVFGVATALQRHPEVTAAFAELGHDIACHGLKWIHYQNVPEDVERAHMAEAMDIIR RLTGERPLGWYTGRDSPNTRRLVADYGGFAYDSDYYGDDLPFWMKVRKTDGTDAMQLIVPYTLDCNDMRFALPQGYSHAD PFFQYMKDTFDALYAEGDPAGDDRPKMMSIGMHCRLLGRPGRITALQRFLDHVQRHEHVWVCRRIDLARHWAATHPCPKV TP >Mature_321_residues TAPPLYDATLPYPRDLVGYGRNPPHARWPGGARIAVQFVLNYEEGGENATLHGDAGSEQFLSEMFNPASYPDRHISMEGI YEYGSRAGVWRLLREFERRGLPLTVFGVATALQRHPEVTAAFAELGHDIACHGLKWIHYQNVPEDVERAHMAEAMDIIRR LTGERPLGWYTGRDSPNTRRLVADYGGFAYDSDYYGDDLPFWMKVRKTDGTDAMQLIVPYTLDCNDMRFALPQGYSHADP FFQYMKDTFDALYAEGDPAGDDRPKMMSIGMHCRLLGRPGRITALQRFLDHVQRHEHVWVCRRIDLARHWAATHPCPKVT P
Specific function: Unknown
COG id: COG0726
COG function: function code G; Predicted xylanase/chitin deacetylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36714; Mature: 36583
Theoretical pI: Translated: 6.56; Mature: 6.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAPPLYDATLPYPRDLVGYGRNPPHARWPGGARIAVQFVLNYEEGGENATLHGDAGSEQ CCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCEEEECCCCHHH FLSEMFNPASYPDRHISMEGIYEYGSRAGVWRLLREFERRGLPLTVFGVATALQRHPEVT HHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCHHH AAFAELGHDIACHGLKWIHYQNVPEDVERAHMAEAMDIIRRLTGERPLGWYTGRDSPNTR HHHHHHCCCEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCC RLVADYGGFAYDSDYYGDDLPFWMKVRKTDGTDAMQLIVPYTLDCNDMRFALPQGYSHAD EEEECCCCCEECCCCCCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCEEECCCCCCCCH PFFQYMKDTFDALYAEGDPAGDDRPKMMSIGMHCRLLGRPGRITALQRFLDHVQRHEHVW HHHHHHHHHHHHHHCCCCCCCCCCCCEEHHCCEEEEECCCCHHHHHHHHHHHHHHCCHHH VCRRIDLARHWAATHPCPKVTP HHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure TAPPLYDATLPYPRDLVGYGRNPPHARWPGGARIAVQFVLNYEEGGENATLHGDAGSEQ CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCEEEECCCCHHH FLSEMFNPASYPDRHISMEGIYEYGSRAGVWRLLREFERRGLPLTVFGVATALQRHPEVT HHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCHHH AAFAELGHDIACHGLKWIHYQNVPEDVERAHMAEAMDIIRRLTGERPLGWYTGRDSPNTR HHHHHHCCCEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCC RLVADYGGFAYDSDYYGDDLPFWMKVRKTDGTDAMQLIVPYTLDCNDMRFALPQGYSHAD EEEECCCCCEECCCCCCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCEEECCCCCCCCH PFFQYMKDTFDALYAEGDPAGDDRPKMMSIGMHCRLLGRPGRITALQRFLDHVQRHEHVW HHHHHHHHHHHHHHCCCCCCCCCCCCEEHHCCEEEEECCCCHHHHHHHHHHHHHHCCHHH VCRRIDLARHWAATHPCPKVTP HHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA