Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is amaB [H]
Identifier: 120609801
GI number: 120609801
Start: 1215148
End: 1216929
Strand: Reverse
Name: amaB [H]
Synonym: Aave_1110
Alternate gene names: 120609801
Gene position: 1216929-1215148 (Counterclockwise)
Preceding gene: 120609802
Following gene: 120609800
Centisome position: 22.73
GC content: 70.54
Gene sequence:
>1782_bases ATGACCCTGACCCTGGACCAGCTCAACGCCGCGCCCGCGGACGAAGCCGCGCGGATGCTGGACGGCCTGTACGAGCATTC GCCCTGGATCGCTGAAAGCGCACTGGCCGAACGCCCGTTCCGCTCGCTCGCGCAGTTGAAGCACGCGATGGTGCGCGTGC TGGACGCCGCTCCGCGCGAAGCGCAGCTCGCGCTCATCCGCGCCCACCCGGAGCTGGCCGGCAAGGCCATGGTGGCGCGC GCGCTCACGGCCGAATCGACCGGCGAGCAGTCCCGCGCCGGCCTCACGCACTGCACACCGGAAGAATTCGAGCGCCTGCA GCAGCTCAACGCCGACTACAACGCGCGCTTCGGTTTCCCGTTCATCCTGGCCGTGCGCGGCCCGCGCGGCACGGGCCTGC CGCGCCAGGAGATCATCGAGACCTTCGCGCGCCGGCTGGACAGCCACCCGGATGCCGAGTTCGCCGAGGCGCTGCGCAAC ATCCACCGCATCGCCGAGATCCGCCTGAACGACAAGTTCGGCGTGGAGCCCGTGCTGGGCAACGACGTGTGGGACTGGCA GGAGAAGCTCGCACAGCACAGCGACCCGGGCTTCGCCGAGAAGGGCCAGCTCACCGTCACCTACCTGACCGACGCGCACC GCGCCTGCGCGCAGCGCATCAGCCACTGGATGCGCGACTGCGGCTTCGACGAGGTCGAGGTGGACGCCGTGGGCAACGTG GTCGGGCGCTACCACGCGTCCACCCCTGAAGGCCAGCGCTGGCTCATGACCGGCAGCCACTACGACACCGTGCGCAACGG CGGCAAGTACGACGGGCGCTTGGGGCTGTTCATCCCCATGGCCTGCGTGCGCGAGCTGCACCGCGCAGGCCGCCGCCTGC CGTTCGGCATCGAGGTGGTGGGCTTCGCCGAAGAAGAAGGCCAGCGCTACAAGGCCACGTTCCTCGGCTCCGGCGCGCTG ATCGGCGACTTCCGCCCCGAATGGCTGGACCAGTGCGATGCCGGCGGCATCACCATGCGCGAAGCCATGCAGCATGCGGG CCTGTGCATCGACGACATCCCGAAACTGCGGCGCGATCCGGCCGCCTACCTGGGCTTCGTGGAAGTGCACATCGAACAGG GCCCCGTGCTCGACGAACTCGGCCTGCCGCTGGGCGTGGTCACCTCCATCAACGGCAGCGCGCGCTACGTGTGCGAGATG CTGGGCGTGGCGAGCCATGCGGGCACCACGCCCATGGACCGCCGCCGCGACGCGGCCACGGGCGTGGCCGAGCTGGCGCT CTACCTGGAGCGCCGCGCCGCGCAGGATGGCGACTCGGTCGGCACCATCGGGCAACTGAACGTGCCCGGCGGCTCCATCA ACGTGGTGCCCGGCCGCTGCGCATTCAGCCTGGACCTGCGCGCGCCCACCGACCCGCAGCGCGACGCGCTGGTGGCGGAC GTGCTCGCCGAGTTGTCCGCGATCGCCCAGCGCCGCGGACTGCGTTACACCGCCGAACGCGCCATGCTCGCGTCGGCCGC CCCGAGCGATCCGGGGTGGCAGCGGCGCTGGGAAGCCGCCGTCGAAGCCGCGGGCCTGCCCGTGTTCCGCATGCCCAGCG GCGCCGGGCACGACGCGATGAAGCTGCACGAGATCCTGCCCCAGGCCATGCTGTTCGTGCGCGGCCAGAACGGCGGCATC AGCCACAACCCTCTGGAAAGCACCACGAGCGACGACATGCAGCTCGCCGTGGAGGCCTTCTCCCATCTCCTGAACCAACT CGCCCAAGAAAAGCACCCATGA
Upstream 100 bases:
>100_bases TCCTCGACCACGTCCAGCGCCACGAGCACGTCTGGGTGTGCCGCCGCATCGACCTCGCGCGCCACTGGGCCGCGACCCAC CCCTGCCCGAAGGTGACGCC
Downstream 100 bases:
>100_bases GCAGCACCTACGCAGACATCGACGCCTGGATCGACCGCCATTTCGACGAGGAGGTGCAGTTCCTGCAGGCCCTCGTGCGC GTGCCCACCGACACGCCGCC
Product: putative bifunctional OHCU decarboxylase/allantoate amidohydrolase
Products: NA
Alternate protein names: L-carbamoylase [H]
Number of amino acids: Translated: 593; Mature: 592
Protein sequence:
>593_residues MTLTLDQLNAAPADEAARMLDGLYEHSPWIAESALAERPFRSLAQLKHAMVRVLDAAPREAQLALIRAHPELAGKAMVAR ALTAESTGEQSRAGLTHCTPEEFERLQQLNADYNARFGFPFILAVRGPRGTGLPRQEIIETFARRLDSHPDAEFAEALRN IHRIAEIRLNDKFGVEPVLGNDVWDWQEKLAQHSDPGFAEKGQLTVTYLTDAHRACAQRISHWMRDCGFDEVEVDAVGNV VGRYHASTPEGQRWLMTGSHYDTVRNGGKYDGRLGLFIPMACVRELHRAGRRLPFGIEVVGFAEEEGQRYKATFLGSGAL IGDFRPEWLDQCDAGGITMREAMQHAGLCIDDIPKLRRDPAAYLGFVEVHIEQGPVLDELGLPLGVVTSINGSARYVCEM LGVASHAGTTPMDRRRDAATGVAELALYLERRAAQDGDSVGTIGQLNVPGGSINVVPGRCAFSLDLRAPTDPQRDALVAD VLAELSAIAQRRGLRYTAERAMLASAAPSDPGWQRRWEAAVEAAGLPVFRMPSGAGHDAMKLHEILPQAMLFVRGQNGGI SHNPLESTTSDDMQLAVEAFSHLLNQLAQEKHP
Sequences:
>Translated_593_residues MTLTLDQLNAAPADEAARMLDGLYEHSPWIAESALAERPFRSLAQLKHAMVRVLDAAPREAQLALIRAHPELAGKAMVAR ALTAESTGEQSRAGLTHCTPEEFERLQQLNADYNARFGFPFILAVRGPRGTGLPRQEIIETFARRLDSHPDAEFAEALRN IHRIAEIRLNDKFGVEPVLGNDVWDWQEKLAQHSDPGFAEKGQLTVTYLTDAHRACAQRISHWMRDCGFDEVEVDAVGNV VGRYHASTPEGQRWLMTGSHYDTVRNGGKYDGRLGLFIPMACVRELHRAGRRLPFGIEVVGFAEEEGQRYKATFLGSGAL IGDFRPEWLDQCDAGGITMREAMQHAGLCIDDIPKLRRDPAAYLGFVEVHIEQGPVLDELGLPLGVVTSINGSARYVCEM LGVASHAGTTPMDRRRDAATGVAELALYLERRAAQDGDSVGTIGQLNVPGGSINVVPGRCAFSLDLRAPTDPQRDALVAD VLAELSAIAQRRGLRYTAERAMLASAAPSDPGWQRRWEAAVEAAGLPVFRMPSGAGHDAMKLHEILPQAMLFVRGQNGGI SHNPLESTTSDDMQLAVEAFSHLLNQLAQEKHP >Mature_592_residues TLTLDQLNAAPADEAARMLDGLYEHSPWIAESALAERPFRSLAQLKHAMVRVLDAAPREAQLALIRAHPELAGKAMVARA LTAESTGEQSRAGLTHCTPEEFERLQQLNADYNARFGFPFILAVRGPRGTGLPRQEIIETFARRLDSHPDAEFAEALRNI HRIAEIRLNDKFGVEPVLGNDVWDWQEKLAQHSDPGFAEKGQLTVTYLTDAHRACAQRISHWMRDCGFDEVEVDAVGNVV GRYHASTPEGQRWLMTGSHYDTVRNGGKYDGRLGLFIPMACVRELHRAGRRLPFGIEVVGFAEEEGQRYKATFLGSGALI GDFRPEWLDQCDAGGITMREAMQHAGLCIDDIPKLRRDPAAYLGFVEVHIEQGPVLDELGLPLGVVTSINGSARYVCEML GVASHAGTTPMDRRRDAATGVAELALYLERRAAQDGDSVGTIGQLNVPGGSINVVPGRCAFSLDLRAPTDPQRDALVADV LAELSAIAQRRGLRYTAERAMLASAAPSDPGWQRRWEAAVEAAGLPVFRMPSGAGHDAMKLHEILPQAMLFVRGQNGGIS HNPLESTTSDDMQLAVEAFSHLLNQLAQEKHP
Specific function: Involved In The Anaerobic Utilization Of Allantoin. Converts Allantoate To (S)-Ureidoglycolate And Ammonia. [C]
COG id: COG0624
COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M20 family [H]
Homologues:
Organism=Homo sapiens, GI157743280, Length=175, Percent_Identity=36, Blast_Score=102, Evalue=1e-21, Organism=Escherichia coli, GI1786726, Length=364, Percent_Identity=33.7912087912088, Blast_Score=173, Evalue=3e-44,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010158 - InterPro: IPR002933 - InterPro: IPR011650 [H]
Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]
EC number: =3.5.1.87 [H]
Molecular weight: Translated: 64956; Mature: 64825
Theoretical pI: Translated: 5.79; Mature: 5.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLTLDQLNAAPADEAARMLDGLYEHSPWIAESALAERPFRSLAQLKHAMVRVLDAAPRE CEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC AQLALIRAHPELAGKAMVARALTAESTGEQSRAGLTHCTPEEFERLQQLNADYNARFGFP CEEEEEECCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCE FILAVRGPRGTGLPRQEIIETFARRLDSHPDAEFAEALRNIHRIAEIRLNDKFGVEPVLG EEEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCC NDVWDWQEKLAQHSDPGFAEKGQLTVTYLTDAHRACAQRISHWMRDCGFDEVEVDAVGNV CCHHHHHHHHHCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCEEHHHHHHH VGRYHASTPEGQRWLMTGSHYDTVRNGGKYDGRLGLFIPMACVRELHRAGRRLPFGIEVV HHHHCCCCCCCCEEEEECCCHHHHHCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCEEEE GFAEEEGQRYKATFLGSGALIGDFRPEWLDQCDAGGITMREAMQHAGLCIDDIPKLRRDP EEEHHCCCEEEEEEECCCCEECCCCHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHCCH AAYLGFVEVHIEQGPVLDELGLPLGVVTSINGSARYVCEMLGVASHAGTTPMDRRRDAAT HHHEEEEEEEECCCCCHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH GVAELALYLERRAAQDGDSVGTIGQLNVPGGSINVVPGRCAFSLDLRAPTDPQRDALVAD HHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEECCCEEEEEECCCCCCCHHHHHHHH VLAELSAIAQRRGLRYTAERAMLASAAPSDPGWQRRWEAAVEAAGLPVFRMPSGAGHDAM HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCHHH KLHEILPQAMLFVRGQNGGISHNPLESTTSDDMQLAVEAFSHLLNQLAQEKHP HHHHHHHHHHHEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TLTLDQLNAAPADEAARMLDGLYEHSPWIAESALAERPFRSLAQLKHAMVRVLDAAPRE EEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC AQLALIRAHPELAGKAMVARALTAESTGEQSRAGLTHCTPEEFERLQQLNADYNARFGFP CEEEEEECCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCE FILAVRGPRGTGLPRQEIIETFARRLDSHPDAEFAEALRNIHRIAEIRLNDKFGVEPVLG EEEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCC NDVWDWQEKLAQHSDPGFAEKGQLTVTYLTDAHRACAQRISHWMRDCGFDEVEVDAVGNV CCHHHHHHHHHCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCEEHHHHHHH VGRYHASTPEGQRWLMTGSHYDTVRNGGKYDGRLGLFIPMACVRELHRAGRRLPFGIEVV HHHHCCCCCCCCEEEEECCCHHHHHCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCEEEE GFAEEEGQRYKATFLGSGALIGDFRPEWLDQCDAGGITMREAMQHAGLCIDDIPKLRRDP EEEHHCCCEEEEEEECCCCEECCCCHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHCCH AAYLGFVEVHIEQGPVLDELGLPLGVVTSINGSARYVCEMLGVASHAGTTPMDRRRDAAT HHHEEEEEEEECCCCCHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH GVAELALYLERRAAQDGDSVGTIGQLNVPGGSINVVPGRCAFSLDLRAPTDPQRDALVAD HHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEECCCEEEEEECCCCCCCHHHHHHHH VLAELSAIAQRRGLRYTAERAMLASAAPSDPGWQRRWEAAVEAAGLPVFRMPSGAGHDAM HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCHHH KLHEILPQAMLFVRGQNGGISHNPLESTTSDDMQLAVEAFSHLLNQLAQEKHP HHHHHHHHHHHEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9023955; 8285691 [H]