Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is yodQ [H]
Identifier: 120609800
GI number: 120609800
Start: 1213922
End: 1215151
Strand: Reverse
Name: yodQ [H]
Synonym: Aave_1109
Alternate gene names: 120609800
Gene position: 1215151-1213922 (Counterclockwise)
Preceding gene: 120609801
Following gene: 120609797
Centisome position: 22.7
GC content: 69.43
Gene sequence:
>1230_bases ATGAGCAGCACCTACGCAGACATCGACGCCTGGATCGACCGCCATTTCGACGAGGAGGTGCAGTTCCTGCAGGCCCTCGT GCGCGTGCCCACCGACACGCCGCCCGGCAACAACGCCCCGCACGCCGAACGCACCGCGGAACTTCTGCAGGGCTTCGGCT ACGACGCCGAGAAGCACGCCGTGCCCGAGGGCGAGGTGCGCGCCTGCGGCATGGAATCGGTCACCAACCTGATCGTGCGC CGCCCCTACGGCGCGGGCGGCCCGACGGTGGCGCTCAATGCGCACGGCGACGTGGTGCCGCCCGGCGAGGGCTGGACGCA CGACCCCTACGGCGCCGAGATCGTGGATGGAAAGATGTACGGCCGCGCCACGGCCGTGAGCAAGAGCGACTTCGCCTCGT TCACCTTCGCGGTGCGTGCGCTGGAAGCCGTGGCCCGCCCGGCGCGCGGCGCGGTGGAACTGCACTTCACCTACGACGAG GAATTCGGCGGCGAACTCGGCCCCGGCTGGCTGCTCGCGCAGGGCCTGACGAAGCCCGACCTGATGATCGCCGCGGGCTT CAGCTACGAGGTGGTGACGGCCCACAACGGCTGCCTGCAGATGGAAGTGACTGTGCACGGCAAGATGGCCCATGCCGCCG TGCCGCACACGGGCGTCGATGCGCTGCAGGGCGCCGTGCACATCCTGAACGCGCTCTACCAGCAGAACACGCTCTACCGG CAGGTCACGTCCAAGGTCGAGGGCATCAAGCACCCCTACCTGAACGTGGGCCGCATCGAGGGCGGCACCAACACCAACGT CGTGCCCGGCAAGGTGGTCTTCAAGCTCGACCGCCGCATGATCCCGGAAGAGAACCCCGTGGAGGTGGAAGCCACCATCC GCCGCGTGATCGACGAGGCCGCCGCCGGCTGCGAAGGCATCCGCGTGGAAGTGCGCCGCCTGCTGCTCGCCAACGCGATG ACGCCGCTGGAAGGCAACCGCCCGCTGGTGGACGCGATCCAGCGCCATGCCGAGGCCGTGTTCGGCGAGCGCCCGCCCGC GGTGGGCACGCCGCTCTACACCGATGTGCGGCTCTACGTGGAGCGCGGCATTCCCGGCGTGATCTATGGCGCGGGGCCAC GTACGGTGCTCGAATCGCACGCCAAGCGCGCGGACGAGCGTGTGGAACTCGAAGACCTGCGCCGCGCCACCAAGGTGATT GCGCGGGCGCTGCACGATCTGCTGGGTTGA
Upstream 100 bases:
>100_bases TCAGCCACAACCCTCTGGAAAGCACCACGAGCGACGACATGCAGCTCGCCGTGGAGGCCTTCTCCCATCTCCTGAACCAA CTCGCCCAAGAAAAGCACCC
Downstream 100 bases:
>100_bases GGGGGGACGACCGCCTGCCGGTTAGGGCATGAGAACGGAGTCTGGCAGTCTCGGACAATCGACGCACTCTGGAGGAATGT TCTCGAAGACCACGTCTTGC
Product: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase
Products: Acetate; Ornithine [C]
Alternate protein names: NA
Number of amino acids: Translated: 409; Mature: 408
Protein sequence:
>409_residues MSSTYADIDAWIDRHFDEEVQFLQALVRVPTDTPPGNNAPHAERTAELLQGFGYDAEKHAVPEGEVRACGMESVTNLIVR RPYGAGGPTVALNAHGDVVPPGEGWTHDPYGAEIVDGKMYGRATAVSKSDFASFTFAVRALEAVARPARGAVELHFTYDE EFGGELGPGWLLAQGLTKPDLMIAAGFSYEVVTAHNGCLQMEVTVHGKMAHAAVPHTGVDALQGAVHILNALYQQNTLYR QVTSKVEGIKHPYLNVGRIEGGTNTNVVPGKVVFKLDRRMIPEENPVEVEATIRRVIDEAAAGCEGIRVEVRRLLLANAM TPLEGNRPLVDAIQRHAEAVFGERPPAVGTPLYTDVRLYVERGIPGVIYGAGPRTVLESHAKRADERVELEDLRRATKVI ARALHDLLG
Sequences:
>Translated_409_residues MSSTYADIDAWIDRHFDEEVQFLQALVRVPTDTPPGNNAPHAERTAELLQGFGYDAEKHAVPEGEVRACGMESVTNLIVR RPYGAGGPTVALNAHGDVVPPGEGWTHDPYGAEIVDGKMYGRATAVSKSDFASFTFAVRALEAVARPARGAVELHFTYDE EFGGELGPGWLLAQGLTKPDLMIAAGFSYEVVTAHNGCLQMEVTVHGKMAHAAVPHTGVDALQGAVHILNALYQQNTLYR QVTSKVEGIKHPYLNVGRIEGGTNTNVVPGKVVFKLDRRMIPEENPVEVEATIRRVIDEAAAGCEGIRVEVRRLLLANAM TPLEGNRPLVDAIQRHAEAVFGERPPAVGTPLYTDVRLYVERGIPGVIYGAGPRTVLESHAKRADERVELEDLRRATKVI ARALHDLLG >Mature_408_residues SSTYADIDAWIDRHFDEEVQFLQALVRVPTDTPPGNNAPHAERTAELLQGFGYDAEKHAVPEGEVRACGMESVTNLIVRR PYGAGGPTVALNAHGDVVPPGEGWTHDPYGAEIVDGKMYGRATAVSKSDFASFTFAVRALEAVARPARGAVELHFTYDEE FGGELGPGWLLAQGLTKPDLMIAAGFSYEVVTAHNGCLQMEVTVHGKMAHAAVPHTGVDALQGAVHILNALYQQNTLYRQ VTSKVEGIKHPYLNVGRIEGGTNTNVVPGKVVFKLDRRMIPEENPVEVEATIRRVIDEAAAGCEGIRVEVRRLLLANAMT PLEGNRPLVDAIQRHAEAVFGERPPAVGTPLYTDVRLYVERGIPGVIYGAGPRTVLESHAKRADERVELEDLRRATKVIA RALHDLLG
Specific function: Displays A Broad Specificity And Can Also Deacylate Substrates Such As Acetylarginine, Acetylhistidine Or Acetylglutamate Semialdehyde. [C]
COG id: COG0624
COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M20A family [H]
Homologues:
Organism=Homo sapiens, GI4501901, Length=330, Percent_Identity=24.2424242424242, Blast_Score=80, Evalue=3e-15, Organism=Escherichia coli, GI1790395, Length=399, Percent_Identity=22.8070175438596, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1788816, Length=406, Percent_Identity=23.6453201970443, Blast_Score=77, Evalue=1e-15, Organism=Drosophila melanogaster, GI21356353, Length=412, Percent_Identity=22.5728155339806, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI24649206, Length=232, Percent_Identity=28.448275862069, Blast_Score=79, Evalue=5e-15, Organism=Drosophila melanogaster, GI24649210, Length=317, Percent_Identity=26.813880126183, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI24649202, Length=230, Percent_Identity=26.5217391304348, Blast_Score=72, Evalue=7e-13, Organism=Drosophila melanogaster, GI24649204, Length=230, Percent_Identity=26.5217391304348, Blast_Score=72, Evalue=7e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010182 - InterPro: IPR002933 - InterPro: IPR011650 [H]
Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]
EC number: 3.5.1.16 [C]
Molecular weight: Translated: 44425; Mature: 44294
Theoretical pI: Translated: 5.86; Mature: 5.86
Prosite motif: PS00758 ARGE_DAPE_CPG2_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSTYADIDAWIDRHFDEEVQFLQALVRVPTDTPPGNNAPHAERTAELLQGFGYDAEKHA CCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHC VPEGEVRACGMESVTNLIVRRPYGAGGPTVALNAHGDVVPPGEGWTHDPYGAEIVDGKMY CCCCCHHHCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCHH GRATAVSKSDFASFTFAVRALEAVARPARGAVELHFTYDEEFGGELGPGWLLAQGLTKPD CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECHHCCCCCCCCHHHHCCCCCCC LMIAAGFSYEVVTAHNGCLQMEVTVHGKMAHAAVPHTGVDALQGAVHILNALYQQNTLYR EEEEECCCEEEEEECCCEEEEEEEECCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH QVTSKVEGIKHPYLNVGRIEGGTNTNVVPGKVVFKLDRRMIPEENPVEVEATIRRVIDEA HHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHEEEHHHCCCCCCCCHHHHHHHHHHHHH AAGCEGIRVEVRRLLLANAMTPLEGNRPLVDAIQRHAEAVFGERPPAVGTPLYTDVRLYV HCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH ERGIPGVIYGAGPRTVLESHAKRADERVELEDLRRATKVIARALHDLLG HCCCCEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure SSTYADIDAWIDRHFDEEVQFLQALVRVPTDTPPGNNAPHAERTAELLQGFGYDAEKHA CCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHC VPEGEVRACGMESVTNLIVRRPYGAGGPTVALNAHGDVVPPGEGWTHDPYGAEIVDGKMY CCCCCHHHCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCHH GRATAVSKSDFASFTFAVRALEAVARPARGAVELHFTYDEEFGGELGPGWLLAQGLTKPD CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECHHCCCCCCCCHHHHCCCCCCC LMIAAGFSYEVVTAHNGCLQMEVTVHGKMAHAAVPHTGVDALQGAVHILNALYQQNTLYR EEEEECCCEEEEEECCCEEEEEEEECCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH QVTSKVEGIKHPYLNVGRIEGGTNTNVVPGKVVFKLDRRMIPEENPVEVEATIRRVIDEA HHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHEEEHHHCCCCCCCCHHHHHHHHHHHHH AAGCEGIRVEVRRLLLANAMTPLEGNRPLVDAIQRHAEAVFGERPPAVGTPLYTDVRLYV HCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH ERGIPGVIYGAGPRTVLESHAKRADERVELEDLRRATKVIARALHDLLG HCCCCEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: Glutathione. [C]
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: N2-Acetyl-L-ornithine; H2O [C]
Specific reaction: N2-Acetyl-L-ornithine + H2O --> Acetate + Ornithine [C]
General reaction: Carboxylic acid amide hydrolysis [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9734814; 9384377 [H]