Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is yodQ [H]

Identifier: 120609800

GI number: 120609800

Start: 1213922

End: 1215151

Strand: Reverse

Name: yodQ [H]

Synonym: Aave_1109

Alternate gene names: 120609800

Gene position: 1215151-1213922 (Counterclockwise)

Preceding gene: 120609801

Following gene: 120609797

Centisome position: 22.7

GC content: 69.43

Gene sequence:

>1230_bases
ATGAGCAGCACCTACGCAGACATCGACGCCTGGATCGACCGCCATTTCGACGAGGAGGTGCAGTTCCTGCAGGCCCTCGT
GCGCGTGCCCACCGACACGCCGCCCGGCAACAACGCCCCGCACGCCGAACGCACCGCGGAACTTCTGCAGGGCTTCGGCT
ACGACGCCGAGAAGCACGCCGTGCCCGAGGGCGAGGTGCGCGCCTGCGGCATGGAATCGGTCACCAACCTGATCGTGCGC
CGCCCCTACGGCGCGGGCGGCCCGACGGTGGCGCTCAATGCGCACGGCGACGTGGTGCCGCCCGGCGAGGGCTGGACGCA
CGACCCCTACGGCGCCGAGATCGTGGATGGAAAGATGTACGGCCGCGCCACGGCCGTGAGCAAGAGCGACTTCGCCTCGT
TCACCTTCGCGGTGCGTGCGCTGGAAGCCGTGGCCCGCCCGGCGCGCGGCGCGGTGGAACTGCACTTCACCTACGACGAG
GAATTCGGCGGCGAACTCGGCCCCGGCTGGCTGCTCGCGCAGGGCCTGACGAAGCCCGACCTGATGATCGCCGCGGGCTT
CAGCTACGAGGTGGTGACGGCCCACAACGGCTGCCTGCAGATGGAAGTGACTGTGCACGGCAAGATGGCCCATGCCGCCG
TGCCGCACACGGGCGTCGATGCGCTGCAGGGCGCCGTGCACATCCTGAACGCGCTCTACCAGCAGAACACGCTCTACCGG
CAGGTCACGTCCAAGGTCGAGGGCATCAAGCACCCCTACCTGAACGTGGGCCGCATCGAGGGCGGCACCAACACCAACGT
CGTGCCCGGCAAGGTGGTCTTCAAGCTCGACCGCCGCATGATCCCGGAAGAGAACCCCGTGGAGGTGGAAGCCACCATCC
GCCGCGTGATCGACGAGGCCGCCGCCGGCTGCGAAGGCATCCGCGTGGAAGTGCGCCGCCTGCTGCTCGCCAACGCGATG
ACGCCGCTGGAAGGCAACCGCCCGCTGGTGGACGCGATCCAGCGCCATGCCGAGGCCGTGTTCGGCGAGCGCCCGCCCGC
GGTGGGCACGCCGCTCTACACCGATGTGCGGCTCTACGTGGAGCGCGGCATTCCCGGCGTGATCTATGGCGCGGGGCCAC
GTACGGTGCTCGAATCGCACGCCAAGCGCGCGGACGAGCGTGTGGAACTCGAAGACCTGCGCCGCGCCACCAAGGTGATT
GCGCGGGCGCTGCACGATCTGCTGGGTTGA

Upstream 100 bases:

>100_bases
TCAGCCACAACCCTCTGGAAAGCACCACGAGCGACGACATGCAGCTCGCCGTGGAGGCCTTCTCCCATCTCCTGAACCAA
CTCGCCCAAGAAAAGCACCC

Downstream 100 bases:

>100_bases
GGGGGGACGACCGCCTGCCGGTTAGGGCATGAGAACGGAGTCTGGCAGTCTCGGACAATCGACGCACTCTGGAGGAATGT
TCTCGAAGACCACGTCTTGC

Product: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase

Products: Acetate; Ornithine [C]

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 408

Protein sequence:

>409_residues
MSSTYADIDAWIDRHFDEEVQFLQALVRVPTDTPPGNNAPHAERTAELLQGFGYDAEKHAVPEGEVRACGMESVTNLIVR
RPYGAGGPTVALNAHGDVVPPGEGWTHDPYGAEIVDGKMYGRATAVSKSDFASFTFAVRALEAVARPARGAVELHFTYDE
EFGGELGPGWLLAQGLTKPDLMIAAGFSYEVVTAHNGCLQMEVTVHGKMAHAAVPHTGVDALQGAVHILNALYQQNTLYR
QVTSKVEGIKHPYLNVGRIEGGTNTNVVPGKVVFKLDRRMIPEENPVEVEATIRRVIDEAAAGCEGIRVEVRRLLLANAM
TPLEGNRPLVDAIQRHAEAVFGERPPAVGTPLYTDVRLYVERGIPGVIYGAGPRTVLESHAKRADERVELEDLRRATKVI
ARALHDLLG

Sequences:

>Translated_409_residues
MSSTYADIDAWIDRHFDEEVQFLQALVRVPTDTPPGNNAPHAERTAELLQGFGYDAEKHAVPEGEVRACGMESVTNLIVR
RPYGAGGPTVALNAHGDVVPPGEGWTHDPYGAEIVDGKMYGRATAVSKSDFASFTFAVRALEAVARPARGAVELHFTYDE
EFGGELGPGWLLAQGLTKPDLMIAAGFSYEVVTAHNGCLQMEVTVHGKMAHAAVPHTGVDALQGAVHILNALYQQNTLYR
QVTSKVEGIKHPYLNVGRIEGGTNTNVVPGKVVFKLDRRMIPEENPVEVEATIRRVIDEAAAGCEGIRVEVRRLLLANAM
TPLEGNRPLVDAIQRHAEAVFGERPPAVGTPLYTDVRLYVERGIPGVIYGAGPRTVLESHAKRADERVELEDLRRATKVI
ARALHDLLG
>Mature_408_residues
SSTYADIDAWIDRHFDEEVQFLQALVRVPTDTPPGNNAPHAERTAELLQGFGYDAEKHAVPEGEVRACGMESVTNLIVRR
PYGAGGPTVALNAHGDVVPPGEGWTHDPYGAEIVDGKMYGRATAVSKSDFASFTFAVRALEAVARPARGAVELHFTYDEE
FGGELGPGWLLAQGLTKPDLMIAAGFSYEVVTAHNGCLQMEVTVHGKMAHAAVPHTGVDALQGAVHILNALYQQNTLYRQ
VTSKVEGIKHPYLNVGRIEGGTNTNVVPGKVVFKLDRRMIPEENPVEVEATIRRVIDEAAAGCEGIRVEVRRLLLANAMT
PLEGNRPLVDAIQRHAEAVFGERPPAVGTPLYTDVRLYVERGIPGVIYGAGPRTVLESHAKRADERVELEDLRRATKVIA
RALHDLLG

Specific function: Displays A Broad Specificity And Can Also Deacylate Substrates Such As Acetylarginine, Acetylhistidine Or Acetylglutamate Semialdehyde. [C]

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family [H]

Homologues:

Organism=Homo sapiens, GI4501901, Length=330, Percent_Identity=24.2424242424242, Blast_Score=80, Evalue=3e-15,
Organism=Escherichia coli, GI1790395, Length=399, Percent_Identity=22.8070175438596, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788816, Length=406, Percent_Identity=23.6453201970443, Blast_Score=77, Evalue=1e-15,
Organism=Drosophila melanogaster, GI21356353, Length=412, Percent_Identity=22.5728155339806, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24649206, Length=232, Percent_Identity=28.448275862069, Blast_Score=79, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24649210, Length=317, Percent_Identity=26.813880126183, Blast_Score=77, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24649202, Length=230, Percent_Identity=26.5217391304348, Blast_Score=72, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24649204, Length=230, Percent_Identity=26.5217391304348, Blast_Score=72, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010182
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: 3.5.1.16 [C]

Molecular weight: Translated: 44425; Mature: 44294

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: PS00758 ARGE_DAPE_CPG2_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSTYADIDAWIDRHFDEEVQFLQALVRVPTDTPPGNNAPHAERTAELLQGFGYDAEKHA
CCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHC
VPEGEVRACGMESVTNLIVRRPYGAGGPTVALNAHGDVVPPGEGWTHDPYGAEIVDGKMY
CCCCCHHHCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCHH
GRATAVSKSDFASFTFAVRALEAVARPARGAVELHFTYDEEFGGELGPGWLLAQGLTKPD
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECHHCCCCCCCCHHHHCCCCCCC
LMIAAGFSYEVVTAHNGCLQMEVTVHGKMAHAAVPHTGVDALQGAVHILNALYQQNTLYR
EEEEECCCEEEEEECCCEEEEEEEECCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
QVTSKVEGIKHPYLNVGRIEGGTNTNVVPGKVVFKLDRRMIPEENPVEVEATIRRVIDEA
HHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHEEEHHHCCCCCCCCHHHHHHHHHHHHH
AAGCEGIRVEVRRLLLANAMTPLEGNRPLVDAIQRHAEAVFGERPPAVGTPLYTDVRLYV
HCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
ERGIPGVIYGAGPRTVLESHAKRADERVELEDLRRATKVIARALHDLLG
HCCCCEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
SSTYADIDAWIDRHFDEEVQFLQALVRVPTDTPPGNNAPHAERTAELLQGFGYDAEKHA
CCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHC
VPEGEVRACGMESVTNLIVRRPYGAGGPTVALNAHGDVVPPGEGWTHDPYGAEIVDGKMY
CCCCCHHHCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCHH
GRATAVSKSDFASFTFAVRALEAVARPARGAVELHFTYDEEFGGELGPGWLLAQGLTKPD
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECHHCCCCCCCCHHHHCCCCCCC
LMIAAGFSYEVVTAHNGCLQMEVTVHGKMAHAAVPHTGVDALQGAVHILNALYQQNTLYR
EEEEECCCEEEEEECCCEEEEEEEECCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
QVTSKVEGIKHPYLNVGRIEGGTNTNVVPGKVVFKLDRRMIPEENPVEVEATIRRVIDEA
HHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHEEEHHHCCCCCCCCHHHHHHHHHHHHH
AAGCEGIRVEVRRLLLANAMTPLEGNRPLVDAIQRHAEAVFGERPPAVGTPLYTDVRLYV
HCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
ERGIPGVIYGAGPRTVLESHAKRADERVELEDLRRATKVIARALHDLLG
HCCCCEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: Glutathione. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: N2-Acetyl-L-ornithine; H2O [C]

Specific reaction: N2-Acetyl-L-ornithine + H2O --> Acetate + Ornithine [C]

General reaction: Carboxylic acid amide hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]