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The map label for this gene is ccsA [H]

Identifier: 120609680

GI number: 120609680

Start: 1082896

End: 1084230

Strand: Direct

Name: ccsA [H]

Synonym: Aave_0986

Alternate gene names: 120609680

Gene position: 1082896-1084230 (Clockwise)

Preceding gene: 120609679

Following gene: 120609681

Centisome position: 20.23

GC content: 66.07

Gene sequence:

>1335_bases
ATGAACACGGCGACCACCACCATCACCCTGAGCGAAGGCTATTTCGCGCGCCGCAACTGGTTCGACTGGGTGTTCGCGGC
CATCGTGGCGGCGGGCGGCCTCTATGCCCTGCAGCGCTACGGCGCCTTCATGGATGTGTACGAGAAGGGCATCCTGCTCG
GTGCCATCCCCTGCACGGTCTGGCTGGGATGGTTCTGGCGTCCGCTGCGCACGCTGATGCTGGCGGTGGCGGCGTTCGCG
TTGCTCGCCATCGGCCTCTACCAGCAGGACGGCGCGGGCAGCCTCGCGCGCGCGGATACCGTGTTCGGTCTCAAGTACTT
CCTCTCCAGCCAGTCCGCCATCCTCTGGATGAGCATGCTGTTCTTCATCAGCACGGTCTTCTACTGGCTGGGCATGTTCG
CCCGGGGCGAGCGCGGCACGCTCTCCCTGCTGGGCTCGCGCATCGCCTGGGTGGCGATCGCCATGGCGCTGATCGGCACG
CTGGTGCGCTGGTACGAGAGCTACCTCATCGGGCCGGACATCGGCCACATCCCCGTGAGCAACCTCTACGAGGTCTTCGT
GCTCTTCTGCTGGATGACGGCCGCGTTCTATCTCTATTACGAGGAGCAGTACGCGACGCGCGCGCTCGGCGGCTTCGTCA
TGCTGGTGGTCAGCGCGGCCGTGGGATTCCTGCTCTGGTACACCGTCGTGCGGGAAGCCCACGAGATCCAGCCCCTGGTG
CCGGCCTTGAAGAGCTGGTGGATGAAGCTGCACGTGCCTGCCAACTTCATCGGCTACGGCACGTTCGCGCTGGCCGCCAT
GGTCGCGTTCGCTTACCTCGTCAAGCAACAAGCCGGCGAGACGCGGTGGTGGAAGCTCGCGCCGCTGTGGATGCTGGGTG
TGGTGCTGTGCTTCGAGCCCATCGTGTTCCGCCAGAGCGCGGCCGAGAACGGCGGCAGCTACTGGATGGTGTATTTCGGC
ATTTCCGCGCTCATCGTCGCCGGCATCCTCCTGGGCCGCCGGCGCATCGCCGAGCGCCTGCCGTCCTTCGAGGTGCTCGA
CGACGTGATGTACAAGGCCATCGCCGTCGGCTTCGCCTTCTTCACCATCGCCACCGTGCTGGGTGCCCTCTGGGCGGCCG
AGGCCTGGGGCGGTTACTGGAGCTGGGATCCGAAGGAGACCTGGGCGCTCATCGTCTGGCTCAACTATGCGGCCTGGCTG
CACATGCGGCTGATGAAGGGGTTGCGCGGCACGGTGTCGGCCTGGTGGGCGCTGGTGGGCCTCGGGGTGACCACCTTCGC
GTTCCTGGGGGTCAACATGTGGCTCTCCGGGCTGCACAGCTACGGAACGTTGTAG

Upstream 100 bases:

>100_bases
CACTGTCCACCAACCGCAAGACCCTGGACGGCGACCGCGAATTCGCCCGGCTCACCGAGAAACTCATCGGGGCCCGGCCC
CACCACGGAGGCATCACCGC

Downstream 100 bases:

>100_bases
CGCGGGATGAGTCTCTCGGAGGGTTCGGCGCGTATAACCGGGGGCTTCCCCCCAGGGCGCCCCTACCGAGGACCATCCAT
GCTCATCCGCAACCACGACG

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 444; Mature: 444

Protein sequence:

>444_residues
MNTATTTITLSEGYFARRNWFDWVFAAIVAAGGLYALQRYGAFMDVYEKGILLGAIPCTVWLGWFWRPLRTLMLAVAAFA
LLAIGLYQQDGAGSLARADTVFGLKYFLSSQSAILWMSMLFFISTVFYWLGMFARGERGTLSLLGSRIAWVAIAMALIGT
LVRWYESYLIGPDIGHIPVSNLYEVFVLFCWMTAAFYLYYEEQYATRALGGFVMLVVSAAVGFLLWYTVVREAHEIQPLV
PALKSWWMKLHVPANFIGYGTFALAAMVAFAYLVKQQAGETRWWKLAPLWMLGVVLCFEPIVFRQSAAENGGSYWMVYFG
ISALIVAGILLGRRRIAERLPSFEVLDDVMYKAIAVGFAFFTIATVLGALWAAEAWGGYWSWDPKETWALIVWLNYAAWL
HMRLMKGLRGTVSAWWALVGLGVTTFAFLGVNMWLSGLHSYGTL

Sequences:

>Translated_444_residues
MNTATTTITLSEGYFARRNWFDWVFAAIVAAGGLYALQRYGAFMDVYEKGILLGAIPCTVWLGWFWRPLRTLMLAVAAFA
LLAIGLYQQDGAGSLARADTVFGLKYFLSSQSAILWMSMLFFISTVFYWLGMFARGERGTLSLLGSRIAWVAIAMALIGT
LVRWYESYLIGPDIGHIPVSNLYEVFVLFCWMTAAFYLYYEEQYATRALGGFVMLVVSAAVGFLLWYTVVREAHEIQPLV
PALKSWWMKLHVPANFIGYGTFALAAMVAFAYLVKQQAGETRWWKLAPLWMLGVVLCFEPIVFRQSAAENGGSYWMVYFG
ISALIVAGILLGRRRIAERLPSFEVLDDVMYKAIAVGFAFFTIATVLGALWAAEAWGGYWSWDPKETWALIVWLNYAAWL
HMRLMKGLRGTVSAWWALVGLGVTTFAFLGVNMWLSGLHSYGTL
>Mature_444_residues
MNTATTTITLSEGYFARRNWFDWVFAAIVAAGGLYALQRYGAFMDVYEKGILLGAIPCTVWLGWFWRPLRTLMLAVAAFA
LLAIGLYQQDGAGSLARADTVFGLKYFLSSQSAILWMSMLFFISTVFYWLGMFARGERGTLSLLGSRIAWVAIAMALIGT
LVRWYESYLIGPDIGHIPVSNLYEVFVLFCWMTAAFYLYYEEQYATRALGGFVMLVVSAAVGFLLWYTVVREAHEIQPLV
PALKSWWMKLHVPANFIGYGTFALAAMVAFAYLVKQQAGETRWWKLAPLWMLGVVLCFEPIVFRQSAAENGGSYWMVYFG
ISALIVAGILLGRRRIAERLPSFEVLDDVMYKAIAVGFAFFTIATVLGALWAAEAWGGYWSWDPKETWALIVWLNYAAWL
HMRLMKGLRGTVSAWWALVGLGVTTFAFLGVNMWLSGLHSYGTL

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 49927; Mature: 49927

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA