Click here to switch to the map view.

The map label for this gene is degT [H]

Identifier: 120609646

GI number: 120609646

Start: 1037878

End: 1038978

Strand: Direct

Name: degT [H]

Synonym: Aave_0952

Alternate gene names: 120609646

Gene position: 1037878-1038978 (Clockwise)

Preceding gene: 120609645

Following gene: 120609647

Centisome position: 19.39

GC content: 59.4

Gene sequence:

>1101_bases
ATGGAATTCACAGATCTGAAAGCGCAATACCGAGCGCTCAAGCCGGAAATCGACGAGGGCATCCGCAGGGTGCTGGACCA
TGGGCAGTACATCATGGGGCCGGAAGTCGCCGAACTGGAGGAGCGCCTGGCGGACTTCGTGGGGACGAAGCACTGCATCA
CTGCCAGCAACGGTACGGACACGCTCATGGTGGCCATGATGGCGTTGGGCATCGGGCCTGGAGATGAAGTCATCACCACC
CCGTTCACTTTCGTTGCCACGGGGGAAATGATTGCCTTGCTCGGTGCTGTGCCGGTTTTCGTGGACATCGATCCGGAAAC
GTACAACATCGAACCGCAGCTCGTCGAAGATGCCATCACCTCGAAGACCCGCGCCATCATGCCTGTGAGCCTATATGGCC
AGTGCGCGGACATGGACGCCATCAACGAAATCGCAGCACGGCACGGGCTTGCAGTGATCGAGGACGCCGCGCAGTCGTTC
GGCGCGACCTACAAAGGCCGCAGATCCTGTGGCTTGTCGACCGTTGGTTCCACCAGCTTCTTTCCCAGCAAACCCCTGGG
CTGCTATGGCGACGGAGGGGCCCTGTTCACCGACGACGACGCACTGGCCAAGGCAATGCGTGAGATCAGGGTGCACGGCC
AGGATCGCCGCTACCACCACCCGAGGCTCGGCATCAACGGCCGGCTCGATACGCTGCAGGCAGCTATCCTGCTGGTCAAG
CTGGGGCGCTTCCCATGGGAGATCGGCCAGAGGCAGAAGGCCGCGGACATCTATACCGATCTGCTCAAAGTCCATTGTCC
CGAAGTCGTTCGGCCACACATCAGCGAAAACGGTACCAGTGTCTATGCGCAATACAGCGTTCAGGTCGAAGACCGCGAAA
GGGTCATTGCGTTCCTCAAGGCGCGCGGCATTCCAACGGCAGTCCACTACCCGGTGCCCTTGAATCATCAGCCAGCTTAC
AAGGACATCTGCAAGGGATATCACACGCCGAAGAGCAGTGAGGCGGCGAATCGCATCATCAGTCTGCCCATGAGTGCCGA
CATTACTGAGCAAGACCAGCGAGACGTCGTTGCTGCACTGGCAATGGCATTGAAAAAATGA

Upstream 100 bases:

>100_bases
GACTGGAAATGGCGAAGCCACATGTCCTGCCACGGGTGGCCGCTACCAGTTGCTGGATGGCCGGGTCCAACGTATTTGAA
CCGTATTCGACAGGGATGTC

Downstream 100 bases:

>100_bases
AAAAAATTCTTACTGTAGTGGGTGCCCGCCCCCAATTCATCAAGGCGGCAGCCATATCGCGGGCCATCTCCCAGCGCCAT
GTCGATCGTTTTATAGAAGT

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MEFTDLKAQYRALKPEIDEGIRRVLDHGQYIMGPEVAELEERLADFVGTKHCITASNGTDTLMVAMMALGIGPGDEVITT
PFTFVATGEMIALLGAVPVFVDIDPETYNIEPQLVEDAITSKTRAIMPVSLYGQCADMDAINEIAARHGLAVIEDAAQSF
GATYKGRRSCGLSTVGSTSFFPSKPLGCYGDGGALFTDDDALAKAMREIRVHGQDRRYHHPRLGINGRLDTLQAAILLVK
LGRFPWEIGQRQKAADIYTDLLKVHCPEVVRPHISENGTSVYAQYSVQVEDRERVIAFLKARGIPTAVHYPVPLNHQPAY
KDICKGYHTPKSSEAANRIISLPMSADITEQDQRDVVAALAMALKK

Sequences:

>Translated_366_residues
MEFTDLKAQYRALKPEIDEGIRRVLDHGQYIMGPEVAELEERLADFVGTKHCITASNGTDTLMVAMMALGIGPGDEVITT
PFTFVATGEMIALLGAVPVFVDIDPETYNIEPQLVEDAITSKTRAIMPVSLYGQCADMDAINEIAARHGLAVIEDAAQSF
GATYKGRRSCGLSTVGSTSFFPSKPLGCYGDGGALFTDDDALAKAMREIRVHGQDRRYHHPRLGINGRLDTLQAAILLVK
LGRFPWEIGQRQKAADIYTDLLKVHCPEVVRPHISENGTSVYAQYSVQVEDRERVIAFLKARGIPTAVHYPVPLNHQPAY
KDICKGYHTPKSSEAANRIISLPMSADITEQDQRDVVAALAMALKK
>Mature_366_residues
MEFTDLKAQYRALKPEIDEGIRRVLDHGQYIMGPEVAELEERLADFVGTKHCITASNGTDTLMVAMMALGIGPGDEVITT
PFTFVATGEMIALLGAVPVFVDIDPETYNIEPQLVEDAITSKTRAIMPVSLYGQCADMDAINEIAARHGLAVIEDAAQSF
GATYKGRRSCGLSTVGSTSFFPSKPLGCYGDGGALFTDDDALAKAMREIRVHGQDRRYHHPRLGINGRLDTLQAAILLVK
LGRFPWEIGQRQKAADIYTDLLKVHCPEVVRPHISENGTSVYAQYSVQVEDRERVIAFLKARGIPTAVHYPVPLNHQPAY
KDICKGYHTPKSSEAANRIISLPMSADITEQDQRDVVAALAMALKK

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=364, Percent_Identity=32.967032967033, Blast_Score=174, Evalue=7e-45,
Organism=Escherichia coli, GI2367285, Length=342, Percent_Identity=33.6257309941521, Blast_Score=154, Evalue=1e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 40114; Mature: 40114

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFTDLKAQYRALKPEIDEGIRRVLDHGQYIMGPEVAELEERLADFVGTKHCITASNGTD
CCCCHHHHHHHHCCCHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHCCCCEEECCCCCH
TLMVAMMALGIGPGDEVITTPFTFVATGEMIALLGAVPVFVDIDPETYNIEPQLVEDAIT
HHHHHHHHHCCCCCCCEEECCCCEEEHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHH
SKTRAIMPVSLYGQCADMDAINEIAARHGLAVIEDAAQSFGATYKGRRSCGLSTVGSTSF
HHHHEEEEHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
FPSKPLGCYGDGGALFTDDDALAKAMREIRVHGQDRRYHHPRLGINGRLDTLQAAILLVK
CCCCCCCCCCCCCCEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
LGRFPWEIGQRQKAADIYTDLLKVHCPEVVRPHISENGTSVYAQYSVQVEDRERVIAFLK
HCCCCHHHCCCHHHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEEEEEEECHHHHHHHHHH
ARGIPTAVHYPVPLNHQPAYKDICKGYHTPKSSEAANRIISLPMSADITEQDQRDVVAAL
HCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHEEECCCCCCCCCHHHHHHHHHH
AMALKK
HHHHCC
>Mature Secondary Structure
MEFTDLKAQYRALKPEIDEGIRRVLDHGQYIMGPEVAELEERLADFVGTKHCITASNGTD
CCCCHHHHHHHHCCCHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHCCCCEEECCCCCH
TLMVAMMALGIGPGDEVITTPFTFVATGEMIALLGAVPVFVDIDPETYNIEPQLVEDAIT
HHHHHHHHHCCCCCCCEEECCCCEEEHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHH
SKTRAIMPVSLYGQCADMDAINEIAARHGLAVIEDAAQSFGATYKGRRSCGLSTVGSTSF
HHHHEEEEHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
FPSKPLGCYGDGGALFTDDDALAKAMREIRVHGQDRRYHHPRLGINGRLDTLQAAILLVK
CCCCCCCCCCCCCCEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
LGRFPWEIGQRQKAADIYTDLLKVHCPEVVRPHISENGTSVYAQYSVQVEDRERVIAFLK
HCCCCHHHCCCHHHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEEEEEEECHHHHHHHHHH
ARGIPTAVHYPVPLNHQPAYKDICKGYHTPKSSEAANRIISLPMSADITEQDQRDVVAAL
HCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHEEECCCCCCCCCHHHHHHHHHH
AMALKK
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]