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The map label for this gene is gspD [H]

Identifier: 120609611

GI number: 120609611

Start: 999309

End: 1001741

Strand: Reverse

Name: gspD [H]

Synonym: Aave_0917

Alternate gene names: 120609611

Gene position: 1001741-999309 (Counterclockwise)

Preceding gene: 120609612

Following gene: 120609610

Centisome position: 18.71

GC content: 70.61

Gene sequence:

>2433_bases
ATGACTTCCTTGAATTCGCAGCGCCTGCGGTTTGCCCTCCACGCCATCGCCGCCGGCGCGATGCTCGCCGCCGCCGGCGG
CCCGTTGAACGCCCAGACCGCCACCGGCGCGGCGCCGTCCAGCGTGCGCCCGGGCGAGCCCGTGACGCTGAACTTCGCCG
GTGCCGACATCGAGGCGGTGGCCCGCACCATGGCCACGATCACCGGGCGCAACGTGGTGGTGGACCCGCGCGTGAAGGGC
CAGCTCACTCTGGTCACGGAGCGGGCGGTCCCGCCGGCCGCGGCCTTCCAGCAGTTCCTGGCAGCCCTGCGCCTGCAGGG
CTTCACGGTGGTGGAATCCGCGGGCCTCTACAAGGTCGTTCCCGAAGCGGACGCCAAGCTCCAGTCGGGATCGGTGACGG
TCACCCAGGGCGGCTCGGGCAGCGCGCCGGGCGGCGGGCAGATCGTCACGCAGATCTTCAAGCTCAATTTCGAGAACGCG
GCCAACCTGGTGCCGGTGCTGCGCCCGCTCATCAGCCCGAACAACACGATCAACGTGAACCCGGGCAACAATTCGCTGGT
CATCACCGACTACGCCGACAACCTGCAGCGCATCGCGCGCATCGTCGCGGCGATGGACGTGTCCAACGCCAGCGACGTGG
AAGTGATCCCGCTGCGCAACGCGGTGGCGAGCGAGCTCGCGCCGCTGGTGTCGCGCCTGGTGGAGGGCACGGGCAGCACG
CCCGGCATGGCCACCACCGCGACGGGCACGGCCGGCGCCATCCCGGGGCAGAGCGACACGGCCTACCGCACCACGCTGCT
GCCCGAGCCGCGCAGCAACTCGCTGATCGTGCGTGCCGCCAATCCCGCCCGGCTGGCGCTGGTGCGCACGCTGGTGGACA
AGCTCGACCAGGCGCCGGTCGTGGGAAGCGCGGCGGCGTCGGGGAACATCCACGTGGTGTACCTGAAGAATGCGGACGCC
ACCAAGCTCGCGACCACGCTGCGCGCGGCGCTGGCGGCCTCCATGGGCAGCAACGCGGGCGGCGGTGCCGTGTCCTCCTC
CGGCCCGTCCTCTTCCGGCGGCGGTTCGGGCACCGGTTCCACCGGGCTCTCGGGCTCGGGGCTCATGCAGACCGGCAGCA
GCGGCGGGATGGGCGGCGGTATGGGCGGCAGCTCGAGCGCCGGTGGCCTGGGCAGCAGCGCGGGCAGCCTGAACAGCGCG
AACAGCAACCAGCCGTCCACGGGCGGGCAGATCCAGGCCGACCCCTCCACCAACTCGCTGATCATCTCCGCGCCCGAGCC
GCAGTTCCGGCAACTGCGCGCGGTGATCGACCAGCTCGACGGCCGGCGCGCGCAGGTGCTGGTGGAGAGCCTGATCGTCG
AGGTCGCGGCCAACAAGGTCGCGGACTTCGGCATCCAGTGGCAGGGGGTGATGGGCAACTACGGCAACGGCACCATCGGC
GTCATCGGCACGAACTCCACGGCATCCGGCGGCGCGAACATCCTCAACCTCGCGCTCGCCGCGGCCAGCGGCAGCGTGAG
TGGCGTCACCTCCGCGCTCTCGGCCAGCGGGGCGCGGCCGGGCAACGGGCTGAACGTGGCCATCGCGCCGCGCATCAATG
GCAACTACTACCTGGGCGCGCTCGCCAACTTCCTCGAGAACACGGGCGATGCCAATGTGCTCTCCACCCCCAATCTGCTG
ACGCTGGACAACGAAGAGGCCCAGATCATCATCGGCAACAACGTGCCGTTCGTGACCGGCTCGTATGCCAACAGCACGGG
CAGCAGCACGGTGAACCCGTTCACCACCGTGGAGCGCAAGGACGTGGGCCTGATGCTGCGCGTGCGCCCGCAGATCAGCG
AGAACGGCACGGTCAAGCTGTCTCTATACCAGGAAGTGTCGCAAGTAAACGACGGCACGGCCAACGCAGTCAATGGCCCG
ACAACGAGCAAGCGCTCGATCGAATCCACGGTACTGGTCAACGATGGCAGCGTGATCGTACTGGGCGGCCTGCTGGAAGA
CCGTTATTCCATGGGCCAGGACAAGGTGCCGCTGATGGGTGACTTGCCTGTCGTGGGCGGCCTTTTCCGCAACGAGAACC
GCAGGCGCCAGAAGACCAACCTGATGGTCTTCCTGCGCCCGGTGGTGATCCGCGACACGGCCACGAGCGACGCGCTGATG
ATGGACCGCTACGAGGCCATCCGCGCGCTGCAGCAGAACATCCAGCCCGCCCCCAGCACGGTCATGCGCGCGGTGTCGGA
AGCCCCGGTGCTGCCGCCGCTCGCGCCGTCGCCCGCGGCAGCCCCCGTGGCCACGCCGCAGGGCGCGGCGCCCGCCGTGC
GCAGCGCCCCGCCCGCGCCGCTGGTGCCGCTCGTGCCGCCGGCTCCGGCGCCGGCACGGGCCCCCGCACGCGCCCCGGCG
CCGGCCGATGCCGGGGCCTACGACCCGCAGTAA

Upstream 100 bases:

>100_bases
CCACGGCCGCGCCGGAGCGCGAAGCCGTGCTCTCGAACCTTCTCAACATCATCGGACGGCGCACGGGCGCCCGTTCCCTC
ATCACCGTGGGTTGATCCCT

Downstream 100 bases:

>100_bases
CCGGACATTCCCGTCCTCCCACTCCCCCCACGCCATGCGCCACCCGCTTCCCTACGCCTTCGCGCGCAGTTCGCAACTGC
TGCTGGAGGACGACGGCCAC

Product: general secretion pathway protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 810; Mature: 809

Protein sequence:

>810_residues
MTSLNSQRLRFALHAIAAGAMLAAAGGPLNAQTATGAAPSSVRPGEPVTLNFAGADIEAVARTMATITGRNVVVDPRVKG
QLTLVTERAVPPAAAFQQFLAALRLQGFTVVESAGLYKVVPEADAKLQSGSVTVTQGGSGSAPGGGQIVTQIFKLNFENA
ANLVPVLRPLISPNNTINVNPGNNSLVITDYADNLQRIARIVAAMDVSNASDVEVIPLRNAVASELAPLVSRLVEGTGST
PGMATTATGTAGAIPGQSDTAYRTTLLPEPRSNSLIVRAANPARLALVRTLVDKLDQAPVVGSAAASGNIHVVYLKNADA
TKLATTLRAALAASMGSNAGGGAVSSSGPSSSGGGSGTGSTGLSGSGLMQTGSSGGMGGGMGGSSSAGGLGSSAGSLNSA
NSNQPSTGGQIQADPSTNSLIISAPEPQFRQLRAVIDQLDGRRAQVLVESLIVEVAANKVADFGIQWQGVMGNYGNGTIG
VIGTNSTASGGANILNLALAAASGSVSGVTSALSASGARPGNGLNVAIAPRINGNYYLGALANFLENTGDANVLSTPNLL
TLDNEEAQIIIGNNVPFVTGSYANSTGSSTVNPFTTVERKDVGLMLRVRPQISENGTVKLSLYQEVSQVNDGTANAVNGP
TTSKRSIESTVLVNDGSVIVLGGLLEDRYSMGQDKVPLMGDLPVVGGLFRNENRRRQKTNLMVFLRPVVIRDTATSDALM
MDRYEAIRALQQNIQPAPSTVMRAVSEAPVLPPLAPSPAAAPVATPQGAAPAVRSAPPAPLVPLVPPAPAPARAPARAPA
PADAGAYDPQ

Sequences:

>Translated_810_residues
MTSLNSQRLRFALHAIAAGAMLAAAGGPLNAQTATGAAPSSVRPGEPVTLNFAGADIEAVARTMATITGRNVVVDPRVKG
QLTLVTERAVPPAAAFQQFLAALRLQGFTVVESAGLYKVVPEADAKLQSGSVTVTQGGSGSAPGGGQIVTQIFKLNFENA
ANLVPVLRPLISPNNTINVNPGNNSLVITDYADNLQRIARIVAAMDVSNASDVEVIPLRNAVASELAPLVSRLVEGTGST
PGMATTATGTAGAIPGQSDTAYRTTLLPEPRSNSLIVRAANPARLALVRTLVDKLDQAPVVGSAAASGNIHVVYLKNADA
TKLATTLRAALAASMGSNAGGGAVSSSGPSSSGGGSGTGSTGLSGSGLMQTGSSGGMGGGMGGSSSAGGLGSSAGSLNSA
NSNQPSTGGQIQADPSTNSLIISAPEPQFRQLRAVIDQLDGRRAQVLVESLIVEVAANKVADFGIQWQGVMGNYGNGTIG
VIGTNSTASGGANILNLALAAASGSVSGVTSALSASGARPGNGLNVAIAPRINGNYYLGALANFLENTGDANVLSTPNLL
TLDNEEAQIIIGNNVPFVTGSYANSTGSSTVNPFTTVERKDVGLMLRVRPQISENGTVKLSLYQEVSQVNDGTANAVNGP
TTSKRSIESTVLVNDGSVIVLGGLLEDRYSMGQDKVPLMGDLPVVGGLFRNENRRRQKTNLMVFLRPVVIRDTATSDALM
MDRYEAIRALQQNIQPAPSTVMRAVSEAPVLPPLAPSPAAAPVATPQGAAPAVRSAPPAPLVPLVPPAPAPARAPARAPA
PADAGAYDPQ
>Mature_809_residues
TSLNSQRLRFALHAIAAGAMLAAAGGPLNAQTATGAAPSSVRPGEPVTLNFAGADIEAVARTMATITGRNVVVDPRVKGQ
LTLVTERAVPPAAAFQQFLAALRLQGFTVVESAGLYKVVPEADAKLQSGSVTVTQGGSGSAPGGGQIVTQIFKLNFENAA
NLVPVLRPLISPNNTINVNPGNNSLVITDYADNLQRIARIVAAMDVSNASDVEVIPLRNAVASELAPLVSRLVEGTGSTP
GMATTATGTAGAIPGQSDTAYRTTLLPEPRSNSLIVRAANPARLALVRTLVDKLDQAPVVGSAAASGNIHVVYLKNADAT
KLATTLRAALAASMGSNAGGGAVSSSGPSSSGGGSGTGSTGLSGSGLMQTGSSGGMGGGMGGSSSAGGLGSSAGSLNSAN
SNQPSTGGQIQADPSTNSLIISAPEPQFRQLRAVIDQLDGRRAQVLVESLIVEVAANKVADFGIQWQGVMGNYGNGTIGV
IGTNSTASGGANILNLALAAASGSVSGVTSALSASGARPGNGLNVAIAPRINGNYYLGALANFLENTGDANVLSTPNLLT
LDNEEAQIIIGNNVPFVTGSYANSTGSSTVNPFTTVERKDVGLMLRVRPQISENGTVKLSLYQEVSQVNDGTANAVNGPT
TSKRSIESTVLVNDGSVIVLGGLLEDRYSMGQDKVPLMGDLPVVGGLFRNENRRRQKTNLMVFLRPVVIRDTATSDALMM
DRYEAIRALQQNIQPAPSTVMRAVSEAPVLPPLAPSPAAAPVATPQGAAPAVRSAPPAPLVPLVPPAPAPARAPARAPAP
ADAGAYDPQ

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=725, Percent_Identity=30.2068965517241, Blast_Score=249, Evalue=4e-67,
Organism=Escherichia coli, GI1789793, Length=325, Percent_Identity=26.7692307692308, Blast_Score=103, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 81940; Mature: 81809

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSLNSQRLRFALHAIAAGAMLAAAGGPLNAQTATGAAPSSVRPGEPVTLNFAGADIEAV
CCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHH
ARTMATITGRNVVVDPRVKGQLTLVTERAVPPAAAFQQFLAALRLQGFTVVESAGLYKVV
HHHHHHHCCCEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCEEEEECCCCEEEC
PEADAKLQSGSVTVTQGGSGSAPGGGQIVTQIFKLNFENAANLVPVLRPLISPNNTINVN
CCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEC
PGNNSLVITDYADNLQRIARIVAAMDVSNASDVEVIPLRNAVASELAPLVSRLVEGTGST
CCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCC
PGMATTATGTAGAIPGQSDTAYRTTLLPEPRSNSLIVRAANPARLALVRTLVDKLDQAPV
CCCEEECCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCC
VGSAAASGNIHVVYLKNADATKLATTLRAALAASMGSNAGGGAVSSSGPSSSGGGSGTGS
EECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
TGLSGSGLMQTGSSGGMGGGMGGSSSAGGLGSSAGSLNSANSNQPSTGGQIQADPSTNSL
CCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEE
IISAPEPQFRQLRAVIDQLDGRRAQVLVESLIVEVAANKVADFGIQWQGVMGNYGNGTIG
EEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCEEE
VIGTNSTASGGANILNLALAAASGSVSGVTSALSASGARPGNGLNVAIAPRINGNYYLGA
EEECCCCCCCCCHHEEEEEHHCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEHHH
LANFLENTGDANVLSTPNLLTLDNEEAQIIIGNNVPFVTGSYANSTGSSTVNPFTTVERK
HHHHHHCCCCCCEECCCCEEEECCCCCEEEECCCCCEEECCCCCCCCCCCCCCCEEEECC
DVGLMLRVRPQISENGTVKLSLYQEVSQVNDGTANAVNGPTTSKRSIESTVLVNDGSVIV
CCCEEEEECCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEE
LGGLLEDRYSMGQDKVPLMGDLPVVGGLFRNENRRRQKTNLMVFLRPVVIRDTATSDALM
ECCHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCHHHHHCCEEEEEEEEEEECCCCCCHHH
MDRYEAIRALQQNIQPAPSTVMRAVSEAPVLPPLAPSPAAAPVATPQGAAPAVRSAPPAP
HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
LVPLVPPAPAPARAPARAPAPADAGAYDPQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TSLNSQRLRFALHAIAAGAMLAAAGGPLNAQTATGAAPSSVRPGEPVTLNFAGADIEAV
CCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHH
ARTMATITGRNVVVDPRVKGQLTLVTERAVPPAAAFQQFLAALRLQGFTVVESAGLYKVV
HHHHHHHCCCEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCEEEEECCCCEEEC
PEADAKLQSGSVTVTQGGSGSAPGGGQIVTQIFKLNFENAANLVPVLRPLISPNNTINVN
CCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEC
PGNNSLVITDYADNLQRIARIVAAMDVSNASDVEVIPLRNAVASELAPLVSRLVEGTGST
CCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCC
PGMATTATGTAGAIPGQSDTAYRTTLLPEPRSNSLIVRAANPARLALVRTLVDKLDQAPV
CCCEEECCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCC
VGSAAASGNIHVVYLKNADATKLATTLRAALAASMGSNAGGGAVSSSGPSSSGGGSGTGS
EECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
TGLSGSGLMQTGSSGGMGGGMGGSSSAGGLGSSAGSLNSANSNQPSTGGQIQADPSTNSL
CCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEE
IISAPEPQFRQLRAVIDQLDGRRAQVLVESLIVEVAANKVADFGIQWQGVMGNYGNGTIG
EEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCEEE
VIGTNSTASGGANILNLALAAASGSVSGVTSALSASGARPGNGLNVAIAPRINGNYYLGA
EEECCCCCCCCCHHEEEEEHHCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEHHH
LANFLENTGDANVLSTPNLLTLDNEEAQIIIGNNVPFVTGSYANSTGSSTVNPFTTVERK
HHHHHHCCCCCCEECCCCEEEECCCCCEEEECCCCCEEECCCCCCCCCCCCCCCEEEECC
DVGLMLRVRPQISENGTVKLSLYQEVSQVNDGTANAVNGPTTSKRSIESTVLVNDGSVIV
CCCEEEEECCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEE
LGGLLEDRYSMGQDKVPLMGDLPVVGGLFRNENRRRQKTNLMVFLRPVVIRDTATSDALM
ECCHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCHHHHHCCEEEEEEEEEEECCCCCCHHH
MDRYEAIRALQQNIQPAPSTVMRAVSEAPVLPPLAPSPAAAPVATPQGAAPAVRSAPPAP
HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
LVPLVPPAPAPARAPARAPAPADAGAYDPQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]