| Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008752 |
| Length | 5,352,772 |
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The map label for this gene is dnaE2 [H]
Identifier: 120609220
GI number: 120609220
Start: 560894
End: 562900
Strand: Direct
Name: dnaE2 [H]
Synonym: Aave_0518
Alternate gene names: 120609220
Gene position: 560894-562900 (Clockwise)
Preceding gene: 120609219
Following gene: 120609225
Centisome position: 10.48
GC content: 66.52
Gene sequence:
>2007_bases ATGAACCGCAGGCCGCGCACCATCCCCGACTACGTAGAGTTGCGCTGCGTGTCGAACTTCACTTTCCTGCGCGGCGCGAG CGACCCGGAGGAACTGGTGCGCCGCGCGCAGGAGCTGGGCTACAGCGGGCTGGCCCTCGCGGATGAATGCAGCATGGCGG GCGTGGTACGGGCCCATGTGGCGGCGAAGGCGGCAGGGCTGCGCCTGATCCTCGGTGCGCAGTTCTGCGTGCAGCCGCGC ACCGCGGAAGAGGCACGCTTCACGGTGGTGGTCCTCGCGCGGAACCTCAACGGGTACGGCAACCTCTGCGAGTTCATCAC GAAGCTGCGGCGCTCATCGGCCAAGGGCGAGTACCACCTGACGCAGGGACAGATCACCGGGGCCGAGCTCGCTGACTGCC TTGCGCTGCTCTGCCCCGATCGCCCATCCACCGATGCGCAGCTGGAGGCCGCGGGGACCTGGGCGCTGCAGCAGTTCCGC GGGCGATGCTGGATCGGCGTGGACCAGGTGCGGCAATTGGACGACGAGGCATGGTTGCATCGCATGCGCACGCTCGCGGA ACTGACGGCCCTGCCTTTGGTGGCCGTGGGCGACGTGCATATGCACGTGCGGTCGCGCAAGCCGCTGCAGGACGTGTTGA CGGCCACGCGGATCGGCAAGCCGCTCACGGAATGCGGGCACGCGCTGCACCGCAGCGCTGAGCGCCACCTGCGCACGCGG CTCCGGTTGGCGCAGACCTTTCCGGCCGATCTGCTCGCCGAGACGTTGAACGTGGCCGCGCGCTGCAGCTTCTCCATCGA CGAATTGAAGTACCAGTACCCCGACGAGGTCGTACCGCGCGGTCACACGGCGGCTAGCTTCCTGCGACAGGTCACTTATG AGGGCGCGGGCCGGCGGTGGCCGGAAGGTATCTCACCCACGGTACAGGCACAGATCGAACACGAACTGGAGCTGATCTGC GAACTGCGCTACGAGCACTACTTCCTCACCGTGTATGACATCGTGGCCTTCGCGCGATCGCGGCACATCCTCTGCCAGGG CAGGGGCTCGGCCGCCAACAGCGTGGTCTGCTACTGCCTGGGCGTGACCGAGGTGGACCCGGCGCGTATGTCGGTGCTGT TCGAGCGCTTCATCAGCAGGGAGCGCAACGAGCCGCCGGACATCGACGTGGACTTCGAGCACCAGCGGCGCGAGGAGGTG ATCCAGTACCTGTACACGAAGTACGGCCGCGACCGGGCGGCTCTCACGGCCACGGTCATCAGCTACCGGCCGAAATCGGC GATCCGGGATGTGGGCAAAGCCTTGGGGTTCGACCTGCAGACGCTGGATGCGCTTGCGGAAGGTCAGAAGTGGTTCGACG GGGAGGACATCCGCCTGGAGCGCTTCGAGGAACTGGGCATGTCCGTGTCGGACCTTGCAGTGCGCCAACTCATCACGCTG ACCACCCAGCTGATCGGCTTTCCCAGGCATCTCTCCCAGCACACAGGCGGCTTCGTGCTCACGCGCGACCGGCTGTCCCG CATGGTGCCGATCGAGAACGCGTCCATGGCCGACCGGACCGTGATCGAATGGGACAAGGACGACCTGGATGCCGCGGGCC TGCTGAAAGTCGATGTGCTCGCACTGGGCATGCTCTCGGCCATCCGGCGCGCGCTCGACATGATCGGACTGCGCCGCGGC TACGCGTTCGGCATGCAGGACATCCCCGCGGAGGACAGCGATACCTACGACATGATCTGCAGGGCCGACACGATCGGCGT GTTCCAGATCGAGAGCCGTGCGCAGATGAGCATGCTGCCGCGGCTGCGTCCGCGCTGCTTCTACGACCTCGTGATCGAGG TGGCAATCGTGCGGCCTGGGCCGATCCAGGGCGGAATGGTGCATCCGTACCTCAACCGGCGACAGGGCAAGGAGCCCGTG ACGTACCCGAGCGAGGCGCTCAAGACCGCACTGGGACGGACCCTGGGTGTGAAGTTGTCCCGCTTCCACGGACGGTTATC GGCTTGA
Upstream 100 bases:
>100_bases CTGAGCGCCCATGCCGGTGTGTTGTGGGTGTTCCAGCAGCGACTGGCGGGGGACCAGACCGCCTGGTTCCTGCACGGACA TTTCGCATGAGCAGGGCGAC
Downstream 100 bases:
>100_bases TTCTCAAGCCGGGATTTGGTCTCTCTCGTTGATCTCCGTTGCCTGACACGCCTCGGCGACGACGCGGCGCTCGAACTCCA CGGGTGAGTGGTAGCTCAGC
Product: DNA-directed DNA polymerase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 668; Mature: 668
Protein sequence:
>668_residues MNRRPRTIPDYVELRCVSNFTFLRGASDPEELVRRAQELGYSGLALADECSMAGVVRAHVAAKAAGLRLILGAQFCVQPR TAEEARFTVVVLARNLNGYGNLCEFITKLRRSSAKGEYHLTQGQITGAELADCLALLCPDRPSTDAQLEAAGTWALQQFR GRCWIGVDQVRQLDDEAWLHRMRTLAELTALPLVAVGDVHMHVRSRKPLQDVLTATRIGKPLTECGHALHRSAERHLRTR LRLAQTFPADLLAETLNVAARCSFSIDELKYQYPDEVVPRGHTAASFLRQVTYEGAGRRWPEGISPTVQAQIEHELELIC ELRYEHYFLTVYDIVAFARSRHILCQGRGSAANSVVCYCLGVTEVDPARMSVLFERFISRERNEPPDIDVDFEHQRREEV IQYLYTKYGRDRAALTATVISYRPKSAIRDVGKALGFDLQTLDALAEGQKWFDGEDIRLERFEELGMSVSDLAVRQLITL TTQLIGFPRHLSQHTGGFVLTRDRLSRMVPIENASMADRTVIEWDKDDLDAAGLLKVDVLALGMLSAIRRALDMIGLRRG YAFGMQDIPAEDSDTYDMICRADTIGVFQIESRAQMSMLPRLRPRCFYDLVIEVAIVRPGPIQGGMVHPYLNRRQGKEPV TYPSEALKTALGRTLGVKLSRFHGRLSA
Sequences:
>Translated_668_residues MNRRPRTIPDYVELRCVSNFTFLRGASDPEELVRRAQELGYSGLALADECSMAGVVRAHVAAKAAGLRLILGAQFCVQPR TAEEARFTVVVLARNLNGYGNLCEFITKLRRSSAKGEYHLTQGQITGAELADCLALLCPDRPSTDAQLEAAGTWALQQFR GRCWIGVDQVRQLDDEAWLHRMRTLAELTALPLVAVGDVHMHVRSRKPLQDVLTATRIGKPLTECGHALHRSAERHLRTR LRLAQTFPADLLAETLNVAARCSFSIDELKYQYPDEVVPRGHTAASFLRQVTYEGAGRRWPEGISPTVQAQIEHELELIC ELRYEHYFLTVYDIVAFARSRHILCQGRGSAANSVVCYCLGVTEVDPARMSVLFERFISRERNEPPDIDVDFEHQRREEV IQYLYTKYGRDRAALTATVISYRPKSAIRDVGKALGFDLQTLDALAEGQKWFDGEDIRLERFEELGMSVSDLAVRQLITL TTQLIGFPRHLSQHTGGFVLTRDRLSRMVPIENASMADRTVIEWDKDDLDAAGLLKVDVLALGMLSAIRRALDMIGLRRG YAFGMQDIPAEDSDTYDMICRADTIGVFQIESRAQMSMLPRLRPRCFYDLVIEVAIVRPGPIQGGMVHPYLNRRQGKEPV TYPSEALKTALGRTLGVKLSRFHGRLSA >Mature_668_residues MNRRPRTIPDYVELRCVSNFTFLRGASDPEELVRRAQELGYSGLALADECSMAGVVRAHVAAKAAGLRLILGAQFCVQPR TAEEARFTVVVLARNLNGYGNLCEFITKLRRSSAKGEYHLTQGQITGAELADCLALLCPDRPSTDAQLEAAGTWALQQFR GRCWIGVDQVRQLDDEAWLHRMRTLAELTALPLVAVGDVHMHVRSRKPLQDVLTATRIGKPLTECGHALHRSAERHLRTR LRLAQTFPADLLAETLNVAARCSFSIDELKYQYPDEVVPRGHTAASFLRQVTYEGAGRRWPEGISPTVQAQIEHELELIC ELRYEHYFLTVYDIVAFARSRHILCQGRGSAANSVVCYCLGVTEVDPARMSVLFERFISRERNEPPDIDVDFEHQRREEV IQYLYTKYGRDRAALTATVISYRPKSAIRDVGKALGFDLQTLDALAEGQKWFDGEDIRLERFEELGMSVSDLAVRQLITL TTQLIGFPRHLSQHTGGFVLTRDRLSRMVPIENASMADRTVIEWDKDDLDAAGLLKVDVLALGMLSAIRRALDMIGLRRG YAFGMQDIPAEDSDTYDMICRADTIGVFQIESRAQMSMLPRLRPRCFYDLVIEVAIVRPGPIQGGMVHPYLNRRQGKEPV TYPSEALKTALGRTLGVKLSRFHGRLSA
Specific function: DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase [H]
COG id: COG0587
COG function: function code L; DNA polymerase III, alpha subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DNA polymerase type-C family. DnaE2 subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786381, Length=694, Percent_Identity=30.5475504322767, Blast_Score=303, Evalue=2e-83,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011708 - InterPro: IPR023073 - InterPro: IPR004365 - InterPro: IPR004013 - InterPro: IPR003141 - InterPro: IPR016195 - InterPro: IPR004805 [H]
Pfam domain/function: PF07733 DNA_pol3_alpha; PF02811 PHP; PF01336 tRNA_anti [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 75071; Mature: 75071
Theoretical pI: Translated: 7.67; Mature: 7.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRRPRTIPDYVELRCVSNFTFLRGASDPEELVRRAQELGYSGLALADECSMAGVVRAHV CCCCCCCCCHHHHHHHHCCCCEECCCCCHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHH AAKAAGLRLILGAQFCVQPRTAEEARFTVVVLARNLNGYGNLCEFITKLRRSSAKGEYHL HHHHCCEEEEECCHHHCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEE TQGQITGAELADCLALLCPDRPSTDAQLEAAGTWALQQFRGRCWIGVDQVRQLDDEAWLH ECCCCCHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHCCCEEEEHHHHHHCCHHHHHH RMRTLAELTALPLVAVGDVHMHVRSRKPLQDVLTATRIGKPLTECGHALHRSAERHLRTR HHHHHHHHHHCCCEEECCCCEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH LRLAQTFPADLLAETLNVAARCSFSIDELKYQYPDEVVPRGHTAASFLRQVTYEGAGRRW HHHHHCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC PEGISPTVQAQIEHELELICELRYEHYFLTVYDIVAFARSRHILCQGRGSAANSVVCYCL CCCCCCHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEE GVTEVDPARMSVLFERFISRERNEPPDIDVDFEHQRREEVIQYLYTKYGRDRAALTATVI CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH SYRPKSAIRDVGKALGFDLQTLDALAEGQKWFDGEDIRLERFEELGMSVSDLAVRQLITL HCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH TTQLIGFPRHLSQHTGGFVLTRDRLSRMVPIENASMADRTVIEWDKDDLDAAGLLKVDVL HHHHHCCHHHHHHCCCCEEEEHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHH ALGMLSAIRRALDMIGLRRGYAFGMQDIPAEDSDTYDMICRADTIGVFQIESRAQMSMLP HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHEEEECCCCEEEEECCHHHHHHHH RLRPRCFYDLVIEVAIVRPGPIQGGMVHPYLNRRQGKEPVTYPSEALKTALGRTLGVKLS CCCHHHHHHHHHHHEEECCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHH RFHGRLSA HHCCCCCC >Mature Secondary Structure MNRRPRTIPDYVELRCVSNFTFLRGASDPEELVRRAQELGYSGLALADECSMAGVVRAHV CCCCCCCCCHHHHHHHHCCCCEECCCCCHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHH AAKAAGLRLILGAQFCVQPRTAEEARFTVVVLARNLNGYGNLCEFITKLRRSSAKGEYHL HHHHCCEEEEECCHHHCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEE TQGQITGAELADCLALLCPDRPSTDAQLEAAGTWALQQFRGRCWIGVDQVRQLDDEAWLH ECCCCCHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHCCCEEEEHHHHHHCCHHHHHH RMRTLAELTALPLVAVGDVHMHVRSRKPLQDVLTATRIGKPLTECGHALHRSAERHLRTR HHHHHHHHHHCCCEEECCCCEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH LRLAQTFPADLLAETLNVAARCSFSIDELKYQYPDEVVPRGHTAASFLRQVTYEGAGRRW HHHHHCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC PEGISPTVQAQIEHELELICELRYEHYFLTVYDIVAFARSRHILCQGRGSAANSVVCYCL CCCCCCHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEE GVTEVDPARMSVLFERFISRERNEPPDIDVDFEHQRREEVIQYLYTKYGRDRAALTATVI CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH SYRPKSAIRDVGKALGFDLQTLDALAEGQKWFDGEDIRLERFEELGMSVSDLAVRQLITL HCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH TTQLIGFPRHLSQHTGGFVLTRDRLSRMVPIENASMADRTVIEWDKDDLDAAGLLKVDVL HHHHHCCHHHHHHCCCCEEEEHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHH ALGMLSAIRRALDMIGLRRGYAFGMQDIPAEDSDTYDMICRADTIGVFQIESRAQMSMLP HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHEEEECCCCEEEEECCHHHHHHHH RLRPRCFYDLVIEVAIVRPGPIQGGMVHPYLNRRQGKEPVTYPSEALKTALGRTLGVKLS CCCHHHHHHHHHHHEEECCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHH RFHGRLSA HHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12910271 [H]