| Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008752 |
| Length | 5,352,772 |
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The map label for this gene is ywfM [H]
Identifier: 120608982
GI number: 120608982
Start: 310569
End: 311534
Strand: Direct
Name: ywfM [H]
Synonym: Aave_0279
Alternate gene names: 120608982
Gene position: 310569-311534 (Clockwise)
Preceding gene: 120608981
Following gene: 120608983
Centisome position: 5.8
GC content: 75.36
Gene sequence:
>966_bases ATGTCCTCCCCATCGCAAGCAGCCTCTCCCGACACGCCGTCTTCCGCCACCATCCGGCTGGCGGCACAGCCCGCCTCCCG GGCGCCGCTGGGCATCGGCATGGTGCTGCTGGCCGCCGTGTTGTGGGGCACGACGGGCACGGCGCAGAGCCTCGCGCCTT CCGGCCTGGCGCCGGTGTGGGTGGGGGCGCTGCGGCTGCTGATCGCCGGTGCTTTCTTCGCGGCGCTGCTGCGGTGGCAG GGCGGTGCGCGCGGCCTCGGCGCGCTGCCCTGGCGCGGCGTCCTGGCCGGCGGGGTCTGCGTGGCCGCCTACAACCTGAG TTTTTTCGCCGGGGTGAAGGCCAGCGGCGTGGCGCTGGGCACGGCGATCGCGATCGGCAGCGGCCCGATCTGGGCCGGGC TGCTGCAGACCGTGGTGCAGCGCCGCTGGCCCGCGGCCGTGTGGTGGGCGGGCACGCTGCTCGGCGTGGCGGGCGGGGCC GCCATGGCGCTGGACGGCCGCACCAGCGTGCAGGCGCCGCCGGGCGGCATCGCGCTGTGCCTGGTGGCGGGCCTGTCGTA CGCTGCCTATGCGCTCGTCAACCAGCGGCTGGTGGCCCGCGCAGCGCCGGGGGCCGTCAACCTGGCGGTGTTCGGCTCGG CCGCGCTGTTGTCCCTGCCGGCCGCCTTCGCCATCGCCGGGCCGCTCGCGGTGTCGGCGCGCGCCTGGGGGGTCGTGCTG TACCTGGGTCTGGTGGCCACCGGAGTGGCATACCTGCTTTTCACGCATGCGCTGAGGCACATCAGCGGCGCCACGGGCGT CACCCTCGCGCTGGCCGAACCGGTCGTCGCGTTCTGCCTGGCCGTGGCGGTGGTAGGGGAATCGCCGTCCGCCATGGCCG TTTGGGGGCTGGCGGGCGTGATCGGCGGGCTGCTGATCGTGGTCTGGTCGGAGATCCGCGGCCGCAGGGGGGCAGCGGCC GGGTGA
Upstream 100 bases:
>100_bases GTGCCCGCGCGTTGCGCGGAGACGCCGGCAGGGACTGAACCGGCGCACTTCGAGCGTTGCGCGACACATGGCGGCCGCGC CGCGTGGCACGCTCGGGGCC
Downstream 100 bases:
>100_bases CGGGTGCCGTTTCGGCTGCATGGACATTTGCGCGGGCGGCCTACAGCCGCGCTGCGCTCCGGCGCAATAGACTCGCCCCA TCATGCCGAACGATCACCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 321; Mature: 320
Protein sequence:
>321_residues MSSPSQAASPDTPSSATIRLAAQPASRAPLGIGMVLLAAVLWGTTGTAQSLAPSGLAPVWVGALRLLIAGAFFAALLRWQ GGARGLGALPWRGVLAGGVCVAAYNLSFFAGVKASGVALGTAIAIGSGPIWAGLLQTVVQRRWPAAVWWAGTLLGVAGGA AMALDGRTSVQAPPGGIALCLVAGLSYAAYALVNQRLVARAAPGAVNLAVFGSAALLSLPAAFAIAGPLAVSARAWGVVL YLGLVATGVAYLLFTHALRHISGATGVTLALAEPVVAFCLAVAVVGESPSAMAVWGLAGVIGGLLIVVWSEIRGRRGAAA G
Sequences:
>Translated_321_residues MSSPSQAASPDTPSSATIRLAAQPASRAPLGIGMVLLAAVLWGTTGTAQSLAPSGLAPVWVGALRLLIAGAFFAALLRWQ GGARGLGALPWRGVLAGGVCVAAYNLSFFAGVKASGVALGTAIAIGSGPIWAGLLQTVVQRRWPAAVWWAGTLLGVAGGA AMALDGRTSVQAPPGGIALCLVAGLSYAAYALVNQRLVARAAPGAVNLAVFGSAALLSLPAAFAIAGPLAVSARAWGVVL YLGLVATGVAYLLFTHALRHISGATGVTLALAEPVVAFCLAVAVVGESPSAMAVWGLAGVIGGLLIVVWSEIRGRRGAAA G >Mature_320_residues SSPSQAASPDTPSSATIRLAAQPASRAPLGIGMVLLAAVLWGTTGTAQSLAPSGLAPVWVGALRLLIAGAFFAALLRWQG GARGLGALPWRGVLAGGVCVAAYNLSFFAGVKASGVALGTAIAIGSGPIWAGLLQTVVQRRWPAAVWWAGTLLGVAGGAA MALDGRTSVQAPPGGIALCLVAGLSYAAYALVNQRLVARAAPGAVNLAVFGSAALLSLPAAFAIAGPLAVSARAWGVVLY LGLVATGVAYLLFTHALRHISGATGVTLALAEPVVAFCLAVAVVGESPSAMAVWGLAGVIGGLLIVVWSEIRGRRGAAAG
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 DUF6 domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004779 - InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 31768; Mature: 31636
Theoretical pI: Translated: 11.71; Mature: 11.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSPSQAASPDTPSSATIRLAAQPASRAPLGIGMVLLAAVLWGTTGTAQSLAPSGLAPVW CCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCHHHH VGALRLLIAGAFFAALLRWQGGARGLGALPWRGVLAGGVCVAAYNLSFFAGVKASGVALG HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEH TAIAIGSGPIWAGLLQTVVQRRWPAAVWWAGTLLGVAGGAAMALDGRTSVQAPPGGIALC HEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHH LVAGLSYAAYALVNQRLVARAAPGAVNLAVFGSAALLSLPAAFAIAGPLAVSARAWGVVL HHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH YLGLVATGVAYLLFTHALRHISGATGVTLALAEPVVAFCLAVAVVGESPSAMAVWGLAGV HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH IGGLLIVVWSEIRGRRGAAAG HHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure SSPSQAASPDTPSSATIRLAAQPASRAPLGIGMVLLAAVLWGTTGTAQSLAPSGLAPVW CCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCHHHH VGALRLLIAGAFFAALLRWQGGARGLGALPWRGVLAGGVCVAAYNLSFFAGVKASGVALG HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEH TAIAIGSGPIWAGLLQTVVQRRWPAAVWWAGTLLGVAGGAAMALDGRTSVQAPPGGIALC HEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHH LVAGLSYAAYALVNQRLVARAAPGAVNLAVFGSAALLSLPAAFAIAGPLAVSARAWGVVL HHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH YLGLVATGVAYLLFTHALRHISGATGVTLALAEPVVAFCLAVAVVGESPSAMAVWGLAGV HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH IGGLLIVVWSEIRGRRGAAAG HHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7934828; 9384377 [H]