| Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008752 |
| Length | 5,352,772 |
Click here to switch to the map view.
The map label for this gene is yjiJ [H]
Identifier: 120608976
GI number: 120608976
Start: 302970
End: 304253
Strand: Direct
Name: yjiJ [H]
Synonym: Aave_0273
Alternate gene names: 120608976
Gene position: 302970-304253 (Clockwise)
Preceding gene: 120608973
Following gene: 120608980
Centisome position: 5.66
GC content: 77.18
Gene sequence:
>1284_bases ATGGCCATCGATACCTCTCCGCCCGGCCCCGGTGCCGGCACGTCGCCCGCCCTGGCGGACCGCCCGCTGGCCGTCGCCCT GGCCGGCATGGCCGCGCTGGGCGCCGCCATGGGCATAGGCCGCTTCGCCTTCACCCCGCTGCTGCCCATGATGCTGCGCG ATGGAGCGCTGACCCTGGCCGGAGGCAGCTGGCTCGCCACGGTCAACTACATCGGCTATCTGGCCGGCGCGCTGGTCTGC ATGGCCCTGCCGTGGCTGGCGCCGGGCACGGCCCGTTCATGGCAGGGGGCCCGTCTCACGCGCTGGGGGCTGGCGGCCAC GGTGCTGCTGACCTGCGCCATGGCGCTGCCCCTGCCCGGCGCATGGCCGCTGCTGCGCGCGGCGGCGGGGGTGGCCAGCG CGGTGGTGTTCCTGAACGTGTCGTCCTGGTGCATGGCGCGGCTGGTGGCGCTGGGGCAGCCGGCGCTGGGCGGGCTGATC TTCTGCGGGCCGGGGCTGGGCATCGTGCTGACGGGGCTGTCGGCCAGCGCCATGGTGTCGGCGCACTGGCGGGCCGCCGC GGGCTGGGCCGTCTTCGGGCTGCTCTGCGCGGTGTTGTGCGCGCTGGTGTGGTCGGTGGTGCGCGGGGCGGCGCAGCCGG CGGCCGGCGCGGCGGGGCCCGCCGCGGCGCGCACCGCCGCGCCCGTGGCCCGGGGCGGCCGCTCCGCCCGCGCGCTGCTC ACGCTGGCCTACGGCCTGGCGGGGCTGGGCTATATCGTCACCGCCACCTTCCTGCCGGTGATCGCGCGCGGGGTGCTGCC GGCCGGATCGCCCTGGCCGGACCTGTTCTGGCCGGTGTTCGGCGCGGGCGTGGCGTTGGGTGCGGCCTTGTCCACCCGCA CTCCGGCGGCCTGGGACCGGCGCTGGCTGCTGGCGGGCTGCTACGCGCTGCAGGCGGTTTCCATCGGCCTGGGCCTGGCG TGGCCGGGGGTGCCGGGCTTCGCCCTCGGCAGCCTGCTGCTGGGGCTGCCATTCACCGCCATCACGTTCTATGCGCTGCA GGAGGCGCGGCGCATCTGGCCGGCGGCCGGCGACAGCTTCGCAGGCCTGCTGACGGTGGCCTACGGCCTGGGCCAGATCG CCGGGCCGCCCCTGGTGGCATGGGCACTGCACCATGCCGCCACGCCGCAGCAGGGGTTCGCGCACGGCCTGGCGATGGCG GCCGGCGCGCTGGGGCTGGGAGCGGCGGTGCTGGGCGCGATGGCGTGGCGCTGGCCGCCGGAGCCGCTGCCGGCAGGGGA CTGA
Upstream 100 bases:
>100_bases GCGAAAGATTTCCAGGGCGGACAGGTCCATGAATATCTTGTTTGAAGATGAATCGATTGAATGTTAATCTTAAAAAGAGA ATTAAAGAAGCGAAAACTCC
Downstream 100 bases:
>100_bases CGCGCAGCACCGCGCGGGCGGGCGGTGGTCAGGTGGCGCGCGGCAGCCGCAGAACGAAGCAGGCGCCCTCCGCGCCGTCG GGCCGGTCCGTGCAGTACAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 427; Mature: 426
Protein sequence:
>427_residues MAIDTSPPGPGAGTSPALADRPLAVALAGMAALGAAMGIGRFAFTPLLPMMLRDGALTLAGGSWLATVNYIGYLAGALVC MALPWLAPGTARSWQGARLTRWGLAATVLLTCAMALPLPGAWPLLRAAAGVASAVVFLNVSSWCMARLVALGQPALGGLI FCGPGLGIVLTGLSASAMVSAHWRAAAGWAVFGLLCAVLCALVWSVVRGAAQPAAGAAGPAAARTAAPVARGGRSARALL TLAYGLAGLGYIVTATFLPVIARGVLPAGSPWPDLFWPVFGAGVALGAALSTRTPAAWDRRWLLAGCYALQAVSIGLGLA WPGVPGFALGSLLLGLPFTAITFYALQEARRIWPAAGDSFAGLLTVAYGLGQIAGPPLVAWALHHAATPQQGFAHGLAMA AGALGLGAAVLGAMAWRWPPEPLPAGD
Sequences:
>Translated_427_residues MAIDTSPPGPGAGTSPALADRPLAVALAGMAALGAAMGIGRFAFTPLLPMMLRDGALTLAGGSWLATVNYIGYLAGALVC MALPWLAPGTARSWQGARLTRWGLAATVLLTCAMALPLPGAWPLLRAAAGVASAVVFLNVSSWCMARLVALGQPALGGLI FCGPGLGIVLTGLSASAMVSAHWRAAAGWAVFGLLCAVLCALVWSVVRGAAQPAAGAAGPAAARTAAPVARGGRSARALL TLAYGLAGLGYIVTATFLPVIARGVLPAGSPWPDLFWPVFGAGVALGAALSTRTPAAWDRRWLLAGCYALQAVSIGLGLA WPGVPGFALGSLLLGLPFTAITFYALQEARRIWPAAGDSFAGLLTVAYGLGQIAGPPLVAWALHHAATPQQGFAHGLAMA AGALGLGAAVLGAMAWRWPPEPLPAGD >Mature_426_residues AIDTSPPGPGAGTSPALADRPLAVALAGMAALGAAMGIGRFAFTPLLPMMLRDGALTLAGGSWLATVNYIGYLAGALVCM ALPWLAPGTARSWQGARLTRWGLAATVLLTCAMALPLPGAWPLLRAAAGVASAVVFLNVSSWCMARLVALGQPALGGLIF CGPGLGIVLTGLSASAMVSAHWRAAAGWAVFGLLCAVLCALVWSVVRGAAQPAAGAAGPAAARTAAPVARGGRSARALLT LAYGLAGLGYIVTATFLPVIARGVLPAGSPWPDLFWPVFGAGVALGAALSTRTPAAWDRRWLLAGCYALQAVSIGLGLAW PGVPGFALGSLLLGLPFTAITFYALQEARRIWPAAGDSFAGLLTVAYGLGQIAGPPLVAWALHHAATPQQGFAHGLAMAA GALGLGAAVLGAMAWRWPPEPLPAGD
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1790788, Length=378, Percent_Identity=31.4814814814815, Blast_Score=100, Evalue=2e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010645 - InterPro: IPR016196 [H]
Pfam domain/function: PF06779 DUF1228 [H]
EC number: NA
Molecular weight: Translated: 42879; Mature: 42748
Theoretical pI: Translated: 10.23; Mature: 10.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIDTSPPGPGAGTSPALADRPLAVALAGMAALGAAMGIGRFAFTPLLPMMLRDGALTLA CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE GGSWLATVNYIGYLAGALVCMALPWLAPGTARSWQGARLTRWGLAATVLLTCAMALPLPG CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC AWPLLRAAAGVASAVVFLNVSSWCMARLVALGQPALGGLIFCGPGLGIVLTGLSASAMVS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEECCCHHHHHH AHWRAAAGWAVFGLLCAVLCALVWSVVRGAAQPAAGAAGPAAARTAAPVARGGRSARALL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHH TLAYGLAGLGYIVTATFLPVIARGVLPAGSPWPDLFWPVFGAGVALGAALSTRTPAAWDR HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH RWLLAGCYALQAVSIGLGLAWPGVPGFALGSLLLGLPFTAITFYALQEARRIWPAAGDSF HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCHH AGLLTVAYGLGQIAGPPLVAWALHHAATPQQGFAHGLAMAAGALGLGAAVLGAMAWRWPP HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC EPLPAGD CCCCCCC >Mature Secondary Structure AIDTSPPGPGAGTSPALADRPLAVALAGMAALGAAMGIGRFAFTPLLPMMLRDGALTLA CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE GGSWLATVNYIGYLAGALVCMALPWLAPGTARSWQGARLTRWGLAATVLLTCAMALPLPG CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC AWPLLRAAAGVASAVVFLNVSSWCMARLVALGQPALGGLIFCGPGLGIVLTGLSASAMVS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEECCCHHHHHH AHWRAAAGWAVFGLLCAVLCALVWSVVRGAAQPAAGAAGPAAARTAAPVARGGRSARALL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHH TLAYGLAGLGYIVTATFLPVIARGVLPAGSPWPDLFWPVFGAGVALGAALSTRTPAAWDR HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH RWLLAGCYALQAVSIGLGLAWPGVPGFALGSLLLGLPFTAITFYALQEARRIWPAAGDSF HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCHH AGLLTVAYGLGQIAGPPLVAWALHHAATPQQGFAHGLAMAAGALGLGAAVLGAMAWRWPP HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC EPLPAGD CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503 [H]