Click here to switch to the map view.

The map label for this gene is 120608893

Identifier: 120608893

GI number: 120608893

Start: 207110

End: 209506

Strand: Direct

Name: 120608893

Synonym: Aave_0185

Alternate gene names: NA

Gene position: 207110-209506 (Clockwise)

Preceding gene: 120608892

Following gene: 120608894

Centisome position: 3.87

GC content: 73.97

Gene sequence:

>2397_bases
ATGCAGACGGCAACGGAACCGGCCACGGAGCCCGCGGACCCCGGAGCGTCCGGCGCGGACCGCGCGCAACCGTGGGGCTA
CACCATCGCCGTGCGCGAGCTGTGCGAGTTCACCGCCAAGCAGGGCGACCTCGATCTGCGCTTCACGCCGGCGCCCACGG
CGCGGGAGGGCATGGCGGGCCATGCCGCGGTGGCGGCCCGGCGGGCGGCCGGGTCCCCCGGCTACGAGGCCGAGGTGCCG
CTGGAAGGCGTGTGCGGCCTGCTGCGCGTGCGCGGCCGCGCCGACGGATTCGACGCCGTGGCGGGTCGCGTGGACGAGGT
CAAGACCTTCAAGGGCCGGCTCGACCGCCAGCCGGCCGCCCACCGCGCGCTGCACTGGGCACAGGCCCGGGTGTACGGCT
GGCTGCTGTGCGCCTCGCGCGGCCTGCCGGGGCTCACTGTCTCTCTGGTGTACCTGGACATCGGCACGCAGAAGGAAACC
GTGCTGTCCGAAGACTGGACGGCGCAGGCGCTGCGAGCGCATTTCGAGGCGCTGTGCGGCCGCTTCGTGGACTGGGCCGC
GCAGGAGGTGGCCCACCGCGCGGCGCGCGACGCCGCGTTGCGCACCCTGGCCTTCCCGTTCGCAGGGGGCTTCCGCGCAG
GCCAGCGGCCCCTGTCCGAAGCCGTGTACCGGGCCGCCGCCGCCGGCCGCTGCCTGCTCGCGCAGGCGCCCACGGGCATC
GGCAAGACGGTGGGCACGCTGTTCCCGCTGCTCAAGGCCGCGCCGGGCGCGGGCATCGACAAGGTCTTCTTCCTCGCGGC
CAAGACCTCCGGGCGGCAGGTCGCCCTGGATGCGCTCGCCCGCATCGTCGCGGCACCGCAGGAGTCGCACCAGGCCCCTG
CGGCGCCCCTGACCCTGCCCCTGCGCGTGCTGGAACTGGTGGCGCGCGAGAAGTCCTGCGAATACCCGGGCAGCGCCTGC
CACGGCGACGCCTGCCCGCTCGCGCGCGGCTTCTACGACCGGCTGCCGGCCGCGCGGGCCGATGCGCTGCGCCCGCCGGC
GTGCGGGGCGCCGGCACCGCTGGACCAGGCCCGCGTGCGCGATGCCGCCCTGCGCCACGGGGTGTGCCCCTACTACCTGG
GCCAGGAACTCGGGCGCTGGGCCGACGTGGTGGTGGGCGATTACCACTACTACTTCGACATGGGCGGCCTGCTGCACGGC
CTGGCGCAGGCCGGCCAGTGGCGCGTGGCCCTGCTGGTGGACGAAGCGCACAACCTTGTGGAGCGCGGCCGGCGCATGTA
CAGCGCGGAACTGCTGCCGGAATCGCTCTTGCAGGCCCGCCGCTCGGCCACCGCCGCCACCGTGCCGGCCGTGAAGAAGG
CCCTGGACCGCGTGCGGCGCGGCTGGATGGCACTGGACAGGGAGCAGCCGGCCGACTACGCCGTGCTGGAGGCCTTCCCC
GGCAAGCTGCTCGCGGCGCTGCAGCAGTGCTCTGTCGCGCTGGGCGAGCACTTCGCCGAGCATCCGGAGCAGATGGACGC
CGCGCTGCAGACCTTCCACCTGGAAGTGCTGCAGCTGCTGCGCATGGCCGAACTGCTGGACGCGCATTCCATCGTGGACG
TGAGCCGCCCCGCGCAGGGCGCGGCCCCCGTCGGTTCCGTGGTCTGCGTGCGCAACCTGGTGCCCGCGCCGTTCCTGGGG
CCGCGCCTGCAGGCCGCGCAGTCGGGCACGCTGTTTTCCGCCACGCTGCAGCCCATGGACTACTACGCCGACCTGCTGGG
CCTGCCGCAGGACCACGCCCGCGCCGACGTGGCCTCGCCCTTCCGTGCGGCGCAGCTGCAGGTGCACGTCGCGCGCCACA
TCTCCACGCGCTATGCCCACCGCGCGGCCTCGGTGCAGCCCATCGCCGACCTCATGGCGCGGCAGTTCGCGGAGCGGCCC
GGCAACTACCTGGCCTTCTTCAGCAGCTACGACTACCTGCAGCAGGTGGCGCAGGTGTTCGCGCAGCGCCATCCCGGCGT
GCCGCACTGGTGCCAGTCGCGCCGCATGCAGGAGGCCGGGCAGCGCGCGTTCCTGGAGCGTTTCACCGAGGATGGCGAGG
GCATCGGCTTCGCGGTGCTGGGCGGCGCCTTCGCCGAGGGCATCGACCTGCCCGGCCGCCGGCTGATCGGGGCCTTCCTC
TCCACCCTGGGGCTGCCGCAGGTGAACCCGGTGAACGAGCAGGTGCGCGAACGCATGGACCGGCTCTTCGGGGCGGGCTA
CGACTACGCCTATCTCTACCCGGGCCTGCAGAAGGTCGTGCAGGCCGCGGGCCGGGTGATCCGCACGCCGGAGGACGAGG
GCGTGGTGCACCTCATCGACGACCGCTTCGCGCGCGCGCAGGTGCGGCGGCTGCTGCCCGCGTGGTGGAGCATCTGA

Upstream 100 bases:

>100_bases
TGGGCGAGGAGGGCGGGGCGCCGGCCTCCGGTATGCCTGCCGATGTGCGGGCAGAGGCCGCTGCGCCGGCGCCCTCCGCC
GCTCCCTGACGCGCCAGCCC

Downstream 100 bases:

>100_bases
AGCAGGGATGCCGCGGCTATTCCCCGGTGCTTACGCTCCGCTGACGAAGCACGTGACCGACCAGGGCTGGGGGTTAATGC
ATTACAAATATTCACGCTTT

Product: helicase c2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 798; Mature: 798

Protein sequence:

>798_residues
MQTATEPATEPADPGASGADRAQPWGYTIAVRELCEFTAKQGDLDLRFTPAPTAREGMAGHAAVAARRAAGSPGYEAEVP
LEGVCGLLRVRGRADGFDAVAGRVDEVKTFKGRLDRQPAAHRALHWAQARVYGWLLCASRGLPGLTVSLVYLDIGTQKET
VLSEDWTAQALRAHFEALCGRFVDWAAQEVAHRAARDAALRTLAFPFAGGFRAGQRPLSEAVYRAAAAGRCLLAQAPTGI
GKTVGTLFPLLKAAPGAGIDKVFFLAAKTSGRQVALDALARIVAAPQESHQAPAAPLTLPLRVLELVAREKSCEYPGSAC
HGDACPLARGFYDRLPAARADALRPPACGAPAPLDQARVRDAALRHGVCPYYLGQELGRWADVVVGDYHYYFDMGGLLHG
LAQAGQWRVALLVDEAHNLVERGRRMYSAELLPESLLQARRSATAATVPAVKKALDRVRRGWMALDREQPADYAVLEAFP
GKLLAALQQCSVALGEHFAEHPEQMDAALQTFHLEVLQLLRMAELLDAHSIVDVSRPAQGAAPVGSVVCVRNLVPAPFLG
PRLQAAQSGTLFSATLQPMDYYADLLGLPQDHARADVASPFRAAQLQVHVARHISTRYAHRAASVQPIADLMARQFAERP
GNYLAFFSSYDYLQQVAQVFAQRHPGVPHWCQSRRMQEAGQRAFLERFTEDGEGIGFAVLGGAFAEGIDLPGRRLIGAFL
STLGLPQVNPVNEQVRERMDRLFGAGYDYAYLYPGLQKVVQAAGRVIRTPEDEGVVHLIDDRFARAQVRRLLPAWWSI

Sequences:

>Translated_798_residues
MQTATEPATEPADPGASGADRAQPWGYTIAVRELCEFTAKQGDLDLRFTPAPTAREGMAGHAAVAARRAAGSPGYEAEVP
LEGVCGLLRVRGRADGFDAVAGRVDEVKTFKGRLDRQPAAHRALHWAQARVYGWLLCASRGLPGLTVSLVYLDIGTQKET
VLSEDWTAQALRAHFEALCGRFVDWAAQEVAHRAARDAALRTLAFPFAGGFRAGQRPLSEAVYRAAAAGRCLLAQAPTGI
GKTVGTLFPLLKAAPGAGIDKVFFLAAKTSGRQVALDALARIVAAPQESHQAPAAPLTLPLRVLELVAREKSCEYPGSAC
HGDACPLARGFYDRLPAARADALRPPACGAPAPLDQARVRDAALRHGVCPYYLGQELGRWADVVVGDYHYYFDMGGLLHG
LAQAGQWRVALLVDEAHNLVERGRRMYSAELLPESLLQARRSATAATVPAVKKALDRVRRGWMALDREQPADYAVLEAFP
GKLLAALQQCSVALGEHFAEHPEQMDAALQTFHLEVLQLLRMAELLDAHSIVDVSRPAQGAAPVGSVVCVRNLVPAPFLG
PRLQAAQSGTLFSATLQPMDYYADLLGLPQDHARADVASPFRAAQLQVHVARHISTRYAHRAASVQPIADLMARQFAERP
GNYLAFFSSYDYLQQVAQVFAQRHPGVPHWCQSRRMQEAGQRAFLERFTEDGEGIGFAVLGGAFAEGIDLPGRRLIGAFL
STLGLPQVNPVNEQVRERMDRLFGAGYDYAYLYPGLQKVVQAAGRVIRTPEDEGVVHLIDDRFARAQVRRLLPAWWSI
>Mature_798_residues
MQTATEPATEPADPGASGADRAQPWGYTIAVRELCEFTAKQGDLDLRFTPAPTAREGMAGHAAVAARRAAGSPGYEAEVP
LEGVCGLLRVRGRADGFDAVAGRVDEVKTFKGRLDRQPAAHRALHWAQARVYGWLLCASRGLPGLTVSLVYLDIGTQKET
VLSEDWTAQALRAHFEALCGRFVDWAAQEVAHRAARDAALRTLAFPFAGGFRAGQRPLSEAVYRAAAAGRCLLAQAPTGI
GKTVGTLFPLLKAAPGAGIDKVFFLAAKTSGRQVALDALARIVAAPQESHQAPAAPLTLPLRVLELVAREKSCEYPGSAC
HGDACPLARGFYDRLPAARADALRPPACGAPAPLDQARVRDAALRHGVCPYYLGQELGRWADVVVGDYHYYFDMGGLLHG
LAQAGQWRVALLVDEAHNLVERGRRMYSAELLPESLLQARRSATAATVPAVKKALDRVRRGWMALDREQPADYAVLEAFP
GKLLAALQQCSVALGEHFAEHPEQMDAALQTFHLEVLQLLRMAELLDAHSIVDVSRPAQGAAPVGSVVCVRNLVPAPFLG
PRLQAAQSGTLFSATLQPMDYYADLLGLPQDHARADVASPFRAAQLQVHVARHISTRYAHRAASVQPIADLMARQFAERP
GNYLAFFSSYDYLQQVAQVFAQRHPGVPHWCQSRRMQEAGQRAFLERFTEDGEGIGFAVLGGAFAEGIDLPGRRLIGAFL
STLGLPQVNPVNEQVRERMDRLFGAGYDYAYLYPGLQKVVQAAGRVIRTPEDEGVVHLIDDRFARAQVRRLLPAWWSI

Specific function: Unknown

COG id: COG1199

COG function: function code KL; Rad3-related DNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010614
- InterPro:   IPR014013
- InterPro:   IPR006555
- InterPro:   IPR001650 [H]

Pfam domain/function: PF06733 DEAD_2 [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 86609; Mature: 86609

Theoretical pI: Translated: 8.14; Mature: 8.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTATEPATEPADPGASGADRAQPWGYTIAVRELCEFTAKQGDLDLRFTPAPTAREGMAG
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHCCCH
HAAVAARRAAGSPGYEAEVPLEGVCGLLRVRGRADGFDAVAGRVDEVKTFKGRLDRQPAA
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHCHHHHHHHHHHHHCCCHHH
HRALHWAQARVYGWLLCASRGLPGLTVSLVYLDIGTQKETVLSEDWTAQALRAHFEALCG
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHCCCHHHHHHHHHHHHHHH
RFVDWAAQEVAHRAARDAALRTLAFPFAGGFRAGQRPLSEAVYRAAAAGRCLLAQAPTGI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCC
GKTVGTLFPLLKAAPGAGIDKVFFLAAKTSGRQVALDALARIVAAPQESHQAPAAPLTLP
HHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCHHCCCCCCCCHHH
LRVLELVAREKSCEYPGSACHGDACPLARGFYDRLPAARADALRPPACGAPAPLDQARVR
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHH
DAALRHGVCPYYLGQELGRWADVVVGDYHYYFDMGGLLHGLAQAGQWRVALLVDEAHNLV
HHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHH
ERGRRMYSAELLPESLLQARRSATAATVPAVKKALDRVRRGWMALDREQPADYAVLEAFP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCC
GKLLAALQQCSVALGEHFAEHPEQMDAALQTFHLEVLQLLRMAELLDAHSIVDVSRPAQG
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AAPVGSVVCVRNLVPAPFLGPRLQAAQSGTLFSATLQPMDYYADLLGLPQDHARADVASP
CCCHHHHHHHHHCCCCCCCCCHHHHHCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHCCC
FRAAQLQVHVARHISTRYAHRAASVQPIADLMARQFAERPGNYLAFFSSYDYLQQVAQVF
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHH
AQRHPGVPHWCQSRRMQEAGQRAFLERFTEDGEGIGFAVLGGAFAEGIDLPGRRLIGAFL
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHH
STLGLPQVNPVNEQVRERMDRLFGAGYDYAYLYPGLQKVVQAAGRVIRTPEDEGVVHLID
HHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEECCCCCCCEEEEHH
DRFARAQVRRLLPAWWSI
HHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQTATEPATEPADPGASGADRAQPWGYTIAVRELCEFTAKQGDLDLRFTPAPTAREGMAG
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHCCCH
HAAVAARRAAGSPGYEAEVPLEGVCGLLRVRGRADGFDAVAGRVDEVKTFKGRLDRQPAA
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHCHHHHHHHHHHHHCCCHHH
HRALHWAQARVYGWLLCASRGLPGLTVSLVYLDIGTQKETVLSEDWTAQALRAHFEALCG
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHCCCHHHHHHHHHHHHHHH
RFVDWAAQEVAHRAARDAALRTLAFPFAGGFRAGQRPLSEAVYRAAAAGRCLLAQAPTGI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCC
GKTVGTLFPLLKAAPGAGIDKVFFLAAKTSGRQVALDALARIVAAPQESHQAPAAPLTLP
HHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCHHCCCCCCCCHHH
LRVLELVAREKSCEYPGSACHGDACPLARGFYDRLPAARADALRPPACGAPAPLDQARVR
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHH
DAALRHGVCPYYLGQELGRWADVVVGDYHYYFDMGGLLHGLAQAGQWRVALLVDEAHNLV
HHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHH
ERGRRMYSAELLPESLLQARRSATAATVPAVKKALDRVRRGWMALDREQPADYAVLEAFP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCC
GKLLAALQQCSVALGEHFAEHPEQMDAALQTFHLEVLQLLRMAELLDAHSIVDVSRPAQG
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AAPVGSVVCVRNLVPAPFLGPRLQAAQSGTLFSATLQPMDYYADLLGLPQDHARADVASP
CCCHHHHHHHHHCCCCCCCCCHHHHHCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHCCC
FRAAQLQVHVARHISTRYAHRAASVQPIADLMARQFAERPGNYLAFFSSYDYLQQVAQVF
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHH
AQRHPGVPHWCQSRRMQEAGQRAFLERFTEDGEGIGFAVLGGAFAEGIDLPGRRLIGAFL
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHH
STLGLPQVNPVNEQVRERMDRLFGAGYDYAYLYPGLQKVVQAAGRVIRTPEDEGVVHLID
HHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEECCCCCCCEEEEHH
DRFARAQVRRLLPAWWSI
HHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11029001 [H]