Click here to switch to the map view.

The map label for this gene is ndoA [H]

Identifier: 120608875

GI number: 120608875

Start: 186268

End: 186597

Strand: Direct

Name: ndoA [H]

Synonym: Aave_0167

Alternate gene names: 120608875

Gene position: 186268-186597 (Clockwise)

Preceding gene: 120608874

Following gene: 120608889

Centisome position: 3.48

GC content: 69.39

Gene sequence:

>330_bases
ATGACCGCTATCGATACCGGATGGACCGAAGCCGCCGAACTGGGCGACGTGCCGGAAGACGACGTGATCGGCGTGACCGT
CGGCGGGCGCGACGTGGCGCTCTATTCGGTGGAAGGCGAGGTGTTCGCCACCGACAACCTCTGCACCCACGGCAACGCGC
GGCTGTGCGACGGCTTCCTGGAGGGGCACGAGATCGAATGCCCGCTGCACCAGGGCCGCTTCGACGTGCGGGACGGCAGC
GCGCTGTGCGCGCCGCTCACGCGGGGCCTGCGCACCTACCCCGTGCGGATCGAGCAGGGCAAGGTGTACCTGCAGCTCGA
AGGCGCGTGA

Upstream 100 bases:

>100_bases
TGCGCACGCCCCAGGGGCTGCGCTTCGCCCGCAAGGAATGCATCTACGACAGCGAAATGATCCCGAACTCCATCATCTAC
CCCATCTGAGGAGACATTCC

Downstream 100 bases:

>100_bases
GCCGGGCCGGGCCGGGGCTCCGGGCCTTCGGCGCCGGCTCCGGCATGAATTCAGCGCGCTGCGGCGAGCAGGCGTTCGGG
CTGGAACTGGAAGCCGTCCA

Product: Rieske (2Fe-2S) domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 109; Mature: 108

Protein sequence:

>109_residues
MTAIDTGWTEAAELGDVPEDDVIGVTVGGRDVALYSVEGEVFATDNLCTHGNARLCDGFLEGHEIECPLHQGRFDVRDGS
ALCAPLTRGLRTYPVRIEQGKVYLQLEGA

Sequences:

>Translated_109_residues
MTAIDTGWTEAAELGDVPEDDVIGVTVGGRDVALYSVEGEVFATDNLCTHGNARLCDGFLEGHEIECPLHQGRFDVRDGS
ALCAPLTRGLRTYPVRIEQGKVYLQLEGA
>Mature_108_residues
TAIDTGWTEAAELGDVPEDDVIGVTVGGRDVALYSVEGEVFATDNLCTHGNARLCDGFLEGHEIECPLHQGRFDVRDGSA
LCAPLTRGLRTYPVRIEQGKVYLQLEGA

Specific function: Component of naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyzes the incorporation of both atoms of molecular oxygen into naphthalene to form cis- naphthalene dihydrodiol. This subunit is a 2Fe-2S ferredoxin that transfers electrons

COG id: COG2146

COG function: function code PR; Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

Organism=Escherichia coli, GI1788890, Length=100, Percent_Identity=40, Blast_Score=81, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017941 [H]

Pfam domain/function: PF00355 Rieske [H]

EC number: 1.-.-.-

Molecular weight: Translated: 11750; Mature: 11619

Theoretical pI: Translated: 4.16; Mature: 4.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAIDTGWTEAAELGDVPEDDVIGVTVGGRDVALYSVEGEVFATDNLCTHGNARLCDGFL
CCCCCCCCCCHHHCCCCCCCCEEEEEECCCEEEEEEECCCEEEECCEEECCCCEEECCCC
EGHEIECPLHQGRFDVRDGSALCAPLTRGLRTYPVRIEQGKVYLQLEGA
CCCEEECCCCCCEEEECCCCEEEHHHHCCCEECEEEEECCEEEEEEECC
>Mature Secondary Structure 
TAIDTGWTEAAELGDVPEDDVIGVTVGGRDVALYSVEGEVFATDNLCTHGNARLCDGFL
CCCCCCCCCHHHCCCCCCCCEEEEEECCCEEEEEEECCCEEEECCEEECCCCEEECCCC
EGHEIECPLHQGRFDVRDGSALCAPLTRGLRTYPVRIEQGKVYLQLEGA
CCCEEECCCCCCEEEECCCCEEEHHHHCCCEECEEEEECCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA