| Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008752 |
| Length | 5,352,772 |
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The map label for this gene is 120608795
Identifier: 120608795
GI number: 120608795
Start: 91292
End: 91858
Strand: Direct
Name: 120608795
Synonym: Aave_0085
Alternate gene names: NA
Gene position: 91292-91858 (Clockwise)
Preceding gene: 120608794
Following gene: 120608802
Centisome position: 1.71
GC content: 63.84
Gene sequence:
>567_bases GTGAGCACATCCGTATTCGCCTACCAGACGGCTGAACTGGAGCAGGCCAATGTCGAAGGTATTTGCGTCGGCCTCGTCAC GGAATGGCTGCGCCGTCCGAACCAGAGTCCCTCCGGCCGCATGGCAGCTCTCGCGCGGGACACCCCAAGCCATGCCCAGG CGGCGTTGCGGCAGCAGAAGTACCAGCAGGACAAGGATGCTCTGCGTGCGCAGGGAATGGGAGCTGCCGATGCCGACATG AGGGCGCAGAACGGTGTGCTGCGTGAGGCGGGCCTGCGTCCTGCAGACAACGAGGATATCTACCGTTCCGATGCGTTGTC CGACGTGGCCCGCGCGGTCTCCACCAATGGAACGCGACACCTGCTCGGGTTGTATTTCACGGATGGGACGGCCCACACCG TTGCGACATCCGCGGCCGGCGGCAAGGTGACCCTCTTCGATCCCAACTTCGGTGAGTTCGAGGCCCCGCCGCGCAGGATG GGAGGCTTGATGCAGAGCCTCAGCAACCGCTACGAGCGTCCCAACGGCCACATCCTGATGGCAGTCAGCGTGCAGTCAAT GCATTGA
Upstream 100 bases:
>100_bases CCTGCGCACCCGGCTTCCCCCAGCTACCCCAGCCCACCAGCCCACCAGCCCCACTTTCAGTGCATCCAGTTCCAGTTCCG GCATCGATTCTCCGCCGCGG
Downstream 100 bases:
>100_bases CGTCCTTGCCCTGGCCAACGGCGGCCAGGGCGTGCCCGTTACGGCGCCGGACCACCACCGCCTCAGCGGCTTGCCTTCCT GCGCGCTGTCCAGCGTCGCA
Product: peptidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 188; Mature: 187
Protein sequence:
>188_residues MSTSVFAYQTAELEQANVEGICVGLVTEWLRRPNQSPSGRMAALARDTPSHAQAALRQQKYQQDKDALRAQGMGAADADM RAQNGVLREAGLRPADNEDIYRSDALSDVARAVSTNGTRHLLGLYFTDGTAHTVATSAAGGKVTLFDPNFGEFEAPPRRM GGLMQSLSNRYERPNGHILMAVSVQSMH
Sequences:
>Translated_188_residues MSTSVFAYQTAELEQANVEGICVGLVTEWLRRPNQSPSGRMAALARDTPSHAQAALRQQKYQQDKDALRAQGMGAADADM RAQNGVLREAGLRPADNEDIYRSDALSDVARAVSTNGTRHLLGLYFTDGTAHTVATSAAGGKVTLFDPNFGEFEAPPRRM GGLMQSLSNRYERPNGHILMAVSVQSMH >Mature_187_residues STSVFAYQTAELEQANVEGICVGLVTEWLRRPNQSPSGRMAALARDTPSHAQAALRQQKYQQDKDALRAQGMGAADADMR AQNGVLREAGLRPADNEDIYRSDALSDVARAVSTNGTRHLLGLYFTDGTAHTVATSAAGGKVTLFDPNFGEFEAPPRRMG GLMQSLSNRYERPNGHILMAVSVQSMH
Specific function: Potential cysteine protease, which may play a central role after invasion of host cell [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase C58 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022767 - InterPro: IPR006473 [H]
Pfam domain/function: PF03543 Peptidase_C58 [H]
EC number: NA
Molecular weight: Translated: 20379; Mature: 20248
Theoretical pI: Translated: 7.07; Mature: 7.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTSVFAYQTAELEQANVEGICVGLVTEWLRRPNQSPSGRMAALARDTPSHAQAALRQQK CCCCEEEEECCHHHHCCCCEEHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHH YQQDKDALRAQGMGAADADMRAQNGVLREAGLRPADNEDIYRSDALSDVARAVSTNGTRH HHHHHHHHHHCCCCCCCCHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEE LLGLYFTDGTAHTVATSAAGGKVTLFDPNFGEFEAPPRRMGGLMQSLSNRYERPNGHILM EEEEEEECCCCHHEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEE AVSVQSMH EEEECCCC >Mature Secondary Structure STSVFAYQTAELEQANVEGICVGLVTEWLRRPNQSPSGRMAALARDTPSHAQAALRQQK CCCEEEEECCHHHHCCCCEEHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHH YQQDKDALRAQGMGAADADMRAQNGVLREAGLRPADNEDIYRSDALSDVARAVSTNGTRH HHHHHHHHHHCCCCCCCCHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEE LLGLYFTDGTAHTVATSAAGGKVTLFDPNFGEFEAPPRRMGGLMQSLSNRYERPNGHILM EEEEEEECCCCHHEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEE AVSVQSMH EEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12597275 [H]