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The map label for this gene is rdgC [H]

Identifier: 120608738

GI number: 120608738

Start: 30029

End: 31024

Strand: Direct

Name: rdgC [H]

Synonym: Aave_0025

Alternate gene names: 120608738

Gene position: 30029-31024 (Clockwise)

Preceding gene: 120608735

Following gene: 120608739

Centisome position: 0.56

GC content: 67.97

Gene sequence:

>996_bases
GTGTTCAAGAACATGATCATCTACCGCATCGCCGAGTGGCATGCGGAACTGCCCCAGCTCGAGGAAGCCCTGGCCCGCAC
CCCGTTCGTGGAATGCGGCGCCACCCAGGAAAAATCCGTGGGCTGGGTACCGCCCCGGGGCGAGGCCCACGGCGCGCTCG
CCGAATCCGTGGGCGGCCAGTGGATCCTGCGTTTCATGACCGAGTCCAAGATGCTCCCGGGATCGGTCCTGGCGCGCAAG
GTCAAGGACAAGGCCGCTCGCATCGAGAAGGAAACCGGCCGCAAGCCGGGCAAGAAGGAAACCCGCGAACTCAAGGAAGA
GGCCAAGCTCGACCTGCTGCCGATGGCGTTCACCAAGCAGGGATCGATGTGGGTCTGGATCGACACCGAGGCGCGCCTGC
TGGTGCTCGACACCGGCAGCCAGGGCCGGGCCGACGAGGTCGTCTCGCTGCTGGTGGAAGCGCTGCCGGGCCTGTCGGTC
TCCCTGCTCGATACGCAGACTGCGCCGCAGGCGGCCATGGCCCACTGGCTCAAGGAGCAGGAACCTCCGGTGGGCTTCAG
CGTGGACCGCGAGTGCGAACTCAAAAGCGCCGATGAATCCAAGGCCGTGGTCCGCTATGCGCGCCATCCGCTGGACATCG
ACGAGATCCGTGAGCACATCGCCGCCGGCAAGCTGCCCACCAAGCTCGCGATGAGCTGGGACGACCGCGTCGCCTTCGTG
CTGACCGAGGGCTTGCAGATCAAGAAGGTGTCGTTCCTCGACACGGTGTTCGAGGGCCGGGGACAGGACGATTCGGGCTT
CGACACCGACGTGGCGATCGCCACGGGCGAACTCTCCAAGCTGATCCCTGACCTGATCGAGGCGCTGGGCGGCGAGGGCC
GCACGGGCCTGGACGGCCCGGCGCCGGCACCCGGCGAGCGCCAGGCCGAGGCGGGTGGTGCCGCCACCGCACAGGCCGCT
GCCACGGCGGACGCGGACGACGACGCACCGTTCTGA

Upstream 100 bases:

>100_bases
TGACCCCGCCGGGGCGCGCAGCAACGACAATGGCGCCCTTTTTCGCCGGCACCGCGGCCGGCGTGCCCGCCGCAGGGCGA
TATCGCACACAAGGAATTCC

Downstream 100 bases:

>100_bases
CCGGGCGGCACGGTCCGGCCCTGACGCGGACCGGTGCGGCTACCATCGCCCCCCATGGCGCTCAACTGGGTCTGGATCGG
CTTTTTCACCATCGCGTTCG

Product: recombination associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MFKNMIIYRIAEWHAELPQLEEALARTPFVECGATQEKSVGWVPPRGEAHGALAESVGGQWILRFMTESKMLPGSVLARK
VKDKAARIEKETGRKPGKKETRELKEEAKLDLLPMAFTKQGSMWVWIDTEARLLVLDTGSQGRADEVVSLLVEALPGLSV
SLLDTQTAPQAAMAHWLKEQEPPVGFSVDRECELKSADESKAVVRYARHPLDIDEIREHIAAGKLPTKLAMSWDDRVAFV
LTEGLQIKKVSFLDTVFEGRGQDDSGFDTDVAIATGELSKLIPDLIEALGGEGRTGLDGPAPAPGERQAEAGGAATAQAA
ATADADDDAPF

Sequences:

>Translated_331_residues
MFKNMIIYRIAEWHAELPQLEEALARTPFVECGATQEKSVGWVPPRGEAHGALAESVGGQWILRFMTESKMLPGSVLARK
VKDKAARIEKETGRKPGKKETRELKEEAKLDLLPMAFTKQGSMWVWIDTEARLLVLDTGSQGRADEVVSLLVEALPGLSV
SLLDTQTAPQAAMAHWLKEQEPPVGFSVDRECELKSADESKAVVRYARHPLDIDEIREHIAAGKLPTKLAMSWDDRVAFV
LTEGLQIKKVSFLDTVFEGRGQDDSGFDTDVAIATGELSKLIPDLIEALGGEGRTGLDGPAPAPGERQAEAGGAATAQAA
ATADADDDAPF
>Mature_331_residues
MFKNMIIYRIAEWHAELPQLEEALARTPFVECGATQEKSVGWVPPRGEAHGALAESVGGQWILRFMTESKMLPGSVLARK
VKDKAARIEKETGRKPGKKETRELKEEAKLDLLPMAFTKQGSMWVWIDTEARLLVLDTGSQGRADEVVSLLVEALPGLSV
SLLDTQTAPQAAMAHWLKEQEPPVGFSVDRECELKSADESKAVVRYARHPLDIDEIREHIAAGKLPTKLAMSWDDRVAFV
LTEGLQIKKVSFLDTVFEGRGQDDSGFDTDVAIATGELSKLIPDLIEALGGEGRTGLDGPAPAPGERQAEAGGAATAQAA
ATADADDDAPF

Specific function: May be involved in recombination [H]

COG id: COG2974

COG function: function code L; DNA recombination-dependent growth factor C

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rdgC family [H]

Homologues:

Organism=Escherichia coli, GI1786592, Length=302, Percent_Identity=35.0993377483444, Blast_Score=181, Evalue=5e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007476 [H]

Pfam domain/function: PF04381 RdgC [H]

EC number: NA

Molecular weight: Translated: 35897; Mature: 35897

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKNMIIYRIAEWHAELPQLEEALARTPFVECGATQEKSVGWVPPRGEAHGALAESVGGQ
CCCCHHHHHHHHHHHCCHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCHHHHHHCCHH
WILRFMTESKMLPGSVLARKVKDKAARIEKETGRKPGKKETRELKEEAKLDLLPMAFTKQ
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEHHEECC
GSMWVWIDTEARLLVLDTGSQGRADEVVSLLVEALPGLSVSLLDTQTAPQAAMAHWLKEQ
CCEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHC
EPPVGFSVDRECELKSADESKAVVRYARHPLDIDEIREHIAAGKLPTKLAMSWDDRVAFV
CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHCCCCCCCEEEE
LTEGLQIKKVSFLDTVFEGRGQDDSGFDTDVAIATGELSKLIPDLIEALGGEGRTGLDGP
EECCCEEEHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCC
APAPGERQAEAGGAATAQAAATADADDDAPF
CCCCCCCCHHCCCCHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MFKNMIIYRIAEWHAELPQLEEALARTPFVECGATQEKSVGWVPPRGEAHGALAESVGGQ
CCCCHHHHHHHHHHHCCHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCHHHHHHCCHH
WILRFMTESKMLPGSVLARKVKDKAARIEKETGRKPGKKETRELKEEAKLDLLPMAFTKQ
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEHHEECC
GSMWVWIDTEARLLVLDTGSQGRADEVVSLLVEALPGLSVSLLDTQTAPQAAMAHWLKEQ
CCEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHC
EPPVGFSVDRECELKSADESKAVVRYARHPLDIDEIREHIAAGKLPTKLAMSWDDRVAFV
CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHCCCCCCCEEEE
LTEGLQIKKVSFLDTVFEGRGQDDSGFDTDVAIATGELSKLIPDLIEALGGEGRTGLDGP
EECCCEEEHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCC
APAPGERQAEAGGAATAQAAATADADDDAPF
CCCCCCCCHHCCCCHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA