Click here to switch to the map view.

The map label for this gene is secY [H]

Identifier: 119947106

GI number: 119947106

Start: 4332705

End: 4334033

Strand: Reverse

Name: secY [H]

Synonym: Ping_3504

Alternate gene names: 119947106

Gene position: 4334033-4332705 (Counterclockwise)

Preceding gene: 119947107

Following gene: 119947105

Centisome position: 95.05

GC content: 40.93

Gene sequence:

>1329_bases
ATGGCTAAGAAACCAGGATTAGATCCTAAAGCGGCACAGGGCAGTAAATTGAGTGAGCTTAAAACACGACTTTTGTTTGT
TTTGGGTGCTATTTTAGTGTTCCGTGCAGGTTCTTTTGTTCCAATTCCTGGTATTGACGCCGCTGTCCTGGCTGATCTGT
TCCAACAGCAAAAGGGCACTATCATAGAGATGTTTAACATGTTCTCTGGTGGTGCGCTTGCGCGTGCATCTATCTTCGCA
TTGGGTATTATGCCGTATATTTCGGCTTCTATTATTATCCAATTGATGACCGTTGTTCATCCTCCTTTAGCTGAGCTAAA
AAAAGAGGGTGAATCAGGTCGTCGTAAGATAAATCAATACACGCGTTACGGTACTTTGGTATTAGGTACATTCCAAGCGA
TTGGTATTGCGACTGGTTTGCCATCGATGATGCCCGGACTTGTTGAAAATGCAGGCCCGAGCTTTTACATCACGGCAGTT
GTGAGTCTAGTGACAGGAACTATGTTCCTTATGTGGTTAGGTGAACAAATAACAGAACGTGGTATTGGTAATGGTATTTC
TATCATTATCTTTGTAGGTATTATTGCTGGTCTGCCTCAAGCAATTGGGCAAACAGTAGAGCAAGCACGACAAGGTGAGA
TTCACCTTCTAGTGTTATTAGCATTAATTGTTATCGTTTTTGCGACAACCGCATTTGTTGTGTTTATTGAACGTGGTCAA
CGACGAATCGTTGTTAACTACGCTAAACGTCAACAGGGGCGAAAAGTTTTTGCTGCTCAAAGTACGCATCTGCCATTAAA
ATTAAATATGGCTGGTGTTATTCCTGCAATTTTTGCTTCAAGTGTTATTTTATTCCCAGGTACAATCGCGCAGTGGTTCG
GTCAGACTGAAGGTTTAGGTTGGTTAACGGATGTTTCATTGGCCTTACAGCCAGGGCAACCGTTGCATATGATGTTATAT
GCAGCCGCTATTATCTTCTTTTGCTTCTTTTATACTGCATTGACGTTTAATCCACGTGAAACAGCAGATAATTTGAAGAA
AAGCGGTGCCTTTATTCCAGGTATACGTCCCGGAGAACAAACATCGCGTTACATTGATAAAGTAATGACCCGTTTAACAC
TAGCTGGTGCGTTATATATTACCTTTATCTGTTTGATTCCCGAGTTTATGATGGTAGCAATGAATACTCAGTTCTACTTC
GGTGGTACTTCGTTATTAATTATTGTGGTTGTTATCATGGACTTTATGGCACAGGTTCAGACTCATTTGATGTCCAATCA
ATATGACTCTGTCTTGAAAAAAGCTAACTTGAAGGATTACGGTAAATAA

Upstream 100 bases:

>100_bases
TGAGATCTCTCGTTCAGTTACAGTACAAGGCCTTCGTGTTACTAAAGGTGCTCGTGCTGCAATTGAAGCTGCAGGCGGAA
AAATCGAGGAATAATAGGCA

Downstream 100 bases:

>100_bases
ACCGATTCTCAAGTTATACTAACTACGGAGTGTTGCAATGAAAGTTCGTGCATCCGTTAAAAAAATCTGTCGTAACTGCA
AAGTTATCAAGCGCCACGGT

Product: preprotein translocase, SecY subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 441

Protein sequence:

>442_residues
MAKKPGLDPKAAQGSKLSELKTRLLFVLGAILVFRAGSFVPIPGIDAAVLADLFQQQKGTIIEMFNMFSGGALARASIFA
LGIMPYISASIIIQLMTVVHPPLAELKKEGESGRRKINQYTRYGTLVLGTFQAIGIATGLPSMMPGLVENAGPSFYITAV
VSLVTGTMFLMWLGEQITERGIGNGISIIIFVGIIAGLPQAIGQTVEQARQGEIHLLVLLALIVIVFATTAFVVFIERGQ
RRIVVNYAKRQQGRKVFAAQSTHLPLKLNMAGVIPAIFASSVILFPGTIAQWFGQTEGLGWLTDVSLALQPGQPLHMMLY
AAAIIFFCFFYTALTFNPRETADNLKKSGAFIPGIRPGEQTSRYIDKVMTRLTLAGALYITFICLIPEFMMVAMNTQFYF
GGTSLLIIVVVIMDFMAQVQTHLMSNQYDSVLKKANLKDYGK

Sequences:

>Translated_442_residues
MAKKPGLDPKAAQGSKLSELKTRLLFVLGAILVFRAGSFVPIPGIDAAVLADLFQQQKGTIIEMFNMFSGGALARASIFA
LGIMPYISASIIIQLMTVVHPPLAELKKEGESGRRKINQYTRYGTLVLGTFQAIGIATGLPSMMPGLVENAGPSFYITAV
VSLVTGTMFLMWLGEQITERGIGNGISIIIFVGIIAGLPQAIGQTVEQARQGEIHLLVLLALIVIVFATTAFVVFIERGQ
RRIVVNYAKRQQGRKVFAAQSTHLPLKLNMAGVIPAIFASSVILFPGTIAQWFGQTEGLGWLTDVSLALQPGQPLHMMLY
AAAIIFFCFFYTALTFNPRETADNLKKSGAFIPGIRPGEQTSRYIDKVMTRLTLAGALYITFICLIPEFMMVAMNTQFYF
GGTSLLIIVVVIMDFMAQVQTHLMSNQYDSVLKKANLKDYGK
>Mature_441_residues
AKKPGLDPKAAQGSKLSELKTRLLFVLGAILVFRAGSFVPIPGIDAAVLADLFQQQKGTIIEMFNMFSGGALARASIFAL
GIMPYISASIIIQLMTVVHPPLAELKKEGESGRRKINQYTRYGTLVLGTFQAIGIATGLPSMMPGLVENAGPSFYITAVV
SLVTGTMFLMWLGEQITERGIGNGISIIIFVGIIAGLPQAIGQTVEQARQGEIHLLVLLALIVIVFATTAFVVFIERGQR
RIVVNYAKRQQGRKVFAAQSTHLPLKLNMAGVIPAIFASSVILFPGTIAQWFGQTEGLGWLTDVSLALQPGQPLHMMLYA
AAIIFFCFFYTALTFNPRETADNLKKSGAFIPGIRPGEQTSRYIDKVMTRLTLAGALYITFICLIPEFMMVAMNTQFYFG
GTSLLIIVVVIMDFMAQVQTHLMSNQYDSVLKKANLKDYGK

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=444, Percent_Identity=80.4054054054054, Blast_Score=670, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 48191; Mature: 48060

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
AKKPGLDPKAAQGSKLSELKTRLLFVLGAILVFRAGSFVPIPGIDAAVLADLFQQQKGT
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCH
IIEMFNMFSGGALARASIFALGIMPYISASIIIQLMTVVHPPLAELKKEGESGRRKINQY
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHH
TRYGTLVLGTFQAIGIATGLPSMMPGLVENAGPSFYITAVVSLVTGTMFLMWLGEQITER
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
GIGNGISIIIFVGIIAGLPQAIGQTVEQARQGEIHLLVLLALIVIVFATTAFVVFIERGQ
CCCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
RRIVVNYAKRQQGRKVFAAQSTHLPLKLNMAGVIPAIFASSVILFPGTIAQWFGQTEGLG
CEEEEEHHHHHCCCEEEEECCCCCCEEECHHHHHHHHHHCCHHHCCCHHHHHCCCCCCCC
WLTDVSLALQPGQPLHMMLYAAAIIFFCFFYTALTFNPRETADNLKKSGAFIPGIRPGEQ
CHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCHH
TSRYIDKVMTRLTLAGALYITFICLIPEFMMVAMNTQFYFGGTSLLIIVVVIMDFMAQVQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHH
THLMSNQYDSVLKKANLKDYGK
HHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9322765; 10952301 [H]