Definition | Psychromonas ingrahamii 37, complete genome. |
---|---|
Accession | NC_008709 |
Length | 4,559,598 |
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The map label for this gene is wbbL [H]
Identifier: 119947060
GI number: 119947060
Start: 4277385
End: 4278155
Strand: Reverse
Name: wbbL [H]
Synonym: Ping_3458
Alternate gene names: 119947060
Gene position: 4278155-4277385 (Counterclockwise)
Preceding gene: 119947061
Following gene: 119947059
Centisome position: 93.83
GC content: 30.87
Gene sequence:
>771_bases TTGGCGCACATTTATATATCTATTGTTTCTCATGGTAATGATGACGATATTATTAACAATTATAATTTAAAAGAAATAAA CTCGCTTAATAATGTCACCGTCATTATCAGAGATAATTTATCAAGTCAGAAATTGAAGAAATACTGTGCAGAGAACCATT TTGAGTATAACGCTTCGGATCCCATATTAGGGTTTGGTGCTAACAATAACATTAATTTTGAAGTTGCTTCCAAGTTGGGA ATGAGTAAAACAGATTGGTTTGTTTTATTTAATCCGGATCTTGATATATCTGCTGTAATGATTCACAAACTGTCTGATTC TCTCGCTAATTTTTCAAGTCAGATTTTTGCTATTAATCTTTTTTTCGATGATAAATTTTCTAGAATGGAACATTCATTAA GAAGATTCCCTACTTTTTTTTCATTTTTCAATATACTTAAAGGAAAATCTTTTACAGAAGCTTATGATAAAACTGATCTG GCAGATGGTTCATCAGTTGATTGGGCGGCGGCCTCATTTTTGGTTTTTCAGGCAGAGTTATATGAAAAATTAAATGGTTT CGATGAGGACTACTTTATGTATTTTGAAGATGTAGATCTTTGCTATAGAGCTAATCAATTTTATAGTCAGAATGTGGTTT ATTTAAGTAATGTTAAGGCGATTCATGAAGGTGCATACAAAAATAGAAAACTATTTTCTAAACATTTTAGATGGTATTTT TCGAGCCTGCTGAGATTCCTATTTAAAAGCACTTTCGAGACTAAAAGATGA
Upstream 100 bases:
>100_bases ATTTTATTCATTGGCGAAAAAATATTAAAGGATTAAATATGTATTTAATCCTTTAATAAATATTTTCATTAACAGATTTA TTTTATTGAGGTTTTAAGGG
Downstream 100 bases:
>100_bases AAATAGTATTAACAGGCTCTACAGGTTTTCTTGGTAAGGAGTTATTAACTAAACTTGCAAATGAGCCTGTTGAATTAATT CAAATTGGCCGTAACGAATA
Product: glycosyltransferases-like protein
Products: NA
Alternate protein names: Rhamnosyltransferase [H]
Number of amino acids: Translated: 256; Mature: 255
Protein sequence:
>256_residues MAHIYISIVSHGNDDDIINNYNLKEINSLNNVTVIIRDNLSSQKLKKYCAENHFEYNASDPILGFGANNNINFEVASKLG MSKTDWFVLFNPDLDISAVMIHKLSDSLANFSSQIFAINLFFDDKFSRMEHSLRRFPTFFSFFNILKGKSFTEAYDKTDL ADGSSVDWAAASFLVFQAELYEKLNGFDEDYFMYFEDVDLCYRANQFYSQNVVYLSNVKAIHEGAYKNRKLFSKHFRWYF SSLLRFLFKSTFETKR
Sequences:
>Translated_256_residues MAHIYISIVSHGNDDDIINNYNLKEINSLNNVTVIIRDNLSSQKLKKYCAENHFEYNASDPILGFGANNNINFEVASKLG MSKTDWFVLFNPDLDISAVMIHKLSDSLANFSSQIFAINLFFDDKFSRMEHSLRRFPTFFSFFNILKGKSFTEAYDKTDL ADGSSVDWAAASFLVFQAELYEKLNGFDEDYFMYFEDVDLCYRANQFYSQNVVYLSNVKAIHEGAYKNRKLFSKHFRWYF SSLLRFLFKSTFETKR >Mature_255_residues AHIYISIVSHGNDDDIINNYNLKEINSLNNVTVIIRDNLSSQKLKKYCAENHFEYNASDPILGFGANNNINFEVASKLGM SKTDWFVLFNPDLDISAVMIHKLSDSLANFSSQIFAINLFFDDKFSRMEHSLRRFPTFFSFFNILKGKSFTEAYDKTDLA DGSSVDWAAASFLVFQAELYEKLNGFDEDYFMYFEDVDLCYRANQFYSQNVVYLSNVKAIHEGAYKNRKLFSKHFRWYFS SLLRFLFKSTFETKR
Specific function: Catalyzes the transfer of the rhamnosyl moiety from dTDP-rhamnosyl (dTDP-Rha) onto the undecaprenyl-pyrophosphoryl- GlcNAc (C55-PP-GlcNAc), yielding rhamnosyl-undecaprenyl- pyrophosphoryl-GlcNAc (Rha-C55-PP-GlcNAc) [H]
COG id: COG1216
COG function: function code R; Predicted glycosyltransferases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 2 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: NA
Molecular weight: Translated: 29886; Mature: 29755
Theoretical pI: Translated: 6.40; Mature: 6.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAHIYISIVSHGNDDDIINNYNLKEINSLNNVTVIIRDNLSSQKLKKYCAENHFEYNASD CEEEEEEEEECCCCCCCCCCCCHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCC PILGFGANNNINFEVASKLGMSKTDWFVLFNPDLDISAVMIHKLSDSLANFSSQIFAINL CEEEECCCCCCCEEEHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEE FFDDKFSRMEHSLRRFPTFFSFFNILKGKSFTEAYDKTDLADGSSVDWAAASFLVFQAEL EECCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH YEKLNGFDEDYFMYFEDVDLCYRANQFYSQNVVYLSNVKAIHEGAYKNRKLFSKHFRWYF HHHHCCCCCCCEEEEECHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHH SSLLRFLFKSTFETKR HHHHHHHHHHHHCCCC >Mature Secondary Structure AHIYISIVSHGNDDDIINNYNLKEINSLNNVTVIIRDNLSSQKLKKYCAENHFEYNASD EEEEEEEEECCCCCCCCCCCCHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCC PILGFGANNNINFEVASKLGMSKTDWFVLFNPDLDISAVMIHKLSDSLANFSSQIFAINL CEEEECCCCCCCEEEHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEE FFDDKFSRMEHSLRRFPTFFSFFNILKGKSFTEAYDKTDLADGSSVDWAAASFLVFQAEL EECCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH YEKLNGFDEDYFMYFEDVDLCYRANQFYSQNVVYLSNVKAIHEGAYKNRKLFSKHFRWYF HHHHCCCCCCCEEEEECHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHH SSLLRFLFKSTFETKR HHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7512872; 9097040; 9278503; 7517390; 7517391 [H]