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The map label for this gene is tdcF [C]

Identifier: 119947047

GI number: 119947047

Start: 4255353

End: 4255742

Strand: Reverse

Name: tdcF [C]

Synonym: Ping_3444

Alternate gene names: 119947047

Gene position: 4255742-4255353 (Counterclockwise)

Preceding gene: 119947048

Following gene: 119947046

Centisome position: 93.34

GC content: 38.72

Gene sequence:

>390_bases
ATGACAACGAAACAAATAATAAGCACAACAAAATCACCGGCAGCAATTGGTGCATACTCACAAGCTGTAAAATTTGGCGA
GTTAGTCTTTACTTCTGGCCAAATCCCTTTAATACCTGAAACCATGGAAATAGCGGAAGGCGGGATCAGTGAGCAGACTA
AGCAGGTAATGGAAAACTTAATGGCTGTTTTAGCAGAAGCAAATGCAGATGCCAGCAGTGTTATAAAAACCACTTGTTAT
ATTAAAAATATGAATGACTTTGCTGCTTTTAATACTGTTTACAGTGAATACTTCCCAGAGAATTCTCCAGCACGCGCTTG
TGTTGAAGTGGCACGTTTACCGAAAGATGTTTTAGTGGAAATTGAAGCGATTGCTATTAGTAAAGCTTAA

Upstream 100 bases:

>100_bases
CGCTGTTGGTTGACAGCTGATCGCTTTTTCCTATTGTTTTTCCTCATTATTTAATCCAATATATAGACACACTAATTAAT
CTATTAAGGATGATCGACAG

Downstream 100 bases:

>100_bases
GGATTTTGAGCTTTGAGCTGCGAACTTCGTAACTCGGGGCTTGCAGCTGACAGCTGATAACTGACAGCTCGTAATTTGTA
ACCTATTAATAGAGTGTTTT

Product: putative endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MTTKQIISTTKSPAAIGAYSQAVKFGELVFTSGQIPLIPETMEIAEGGISEQTKQVMENLMAVLAEANADASSVIKTTCY
IKNMNDFAAFNTVYSEYFPENSPARACVEVARLPKDVLVEIEAIAISKA

Sequences:

>Translated_129_residues
MTTKQIISTTKSPAAIGAYSQAVKFGELVFTSGQIPLIPETMEIAEGGISEQTKQVMENLMAVLAEANADASSVIKTTCY
IKNMNDFAAFNTVYSEYFPENSPARACVEVARLPKDVLVEIEAIAISKA
>Mature_128_residues
TTKQIISTTKSPAAIGAYSQAVKFGELVFTSGQIPLIPETMEIAEGGISEQTKQVMENLMAVLAEANADASSVIKTTCYI
KNMNDFAAFNTVYSEYFPENSPARACVEVARLPKDVLVEIEAIAISKA

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=123, Percent_Identity=43.9024390243902, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI87082213, Length=129, Percent_Identity=47.2868217054264, Blast_Score=126, Evalue=5e-31,
Organism=Escherichia coli, GI87082396, Length=127, Percent_Identity=44.8818897637795, Blast_Score=121, Evalue=1e-29,
Organism=Escherichia coli, GI1787245, Length=122, Percent_Identity=27.0491803278689, Blast_Score=61, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71982075, Length=125, Percent_Identity=51.2, Blast_Score=126, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI25148896, Length=125, Percent_Identity=51.2, Blast_Score=126, Evalue=3e-30,
Organism=Caenorhabditis elegans, GI71982068, Length=125, Percent_Identity=51.2, Blast_Score=126, Evalue=3e-30,
Organism=Saccharomyces cerevisiae, GI6322138, Length=128, Percent_Identity=41.40625, Blast_Score=112, Evalue=2e-26,
Organism=Saccharomyces cerevisiae, GI6320899, Length=103, Percent_Identity=42.7184466019417, Blast_Score=94, Evalue=5e-21,
Organism=Drosophila melanogaster, GI19921376, Length=124, Percent_Identity=42.741935483871, Blast_Score=111, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13884; Mature: 13753

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTKQIISTTKSPAAIGAYSQAVKFGELVFTSGQIPLIPETMEIAEGGISEQTKQVMENL
CCCHHHHHCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHCCCCCHHHHHHHHHH
MAVLAEANADASSVIKTTCYIKNMNDFAAFNTVYSEYFPENSPARACVEVARLPKDVLVE
HHHHHHCCCCHHHHHHHHHHEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHH
IEAIAISKA
HHHHEECCC
>Mature Secondary Structure 
TTKQIISTTKSPAAIGAYSQAVKFGELVFTSGQIPLIPETMEIAEGGISEQTKQVMENL
CCHHHHHCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHCCCCCHHHHHHHHHH
MAVLAEANADASSVIKTTCYIKNMNDFAAFNTVYSEYFPENSPARACVEVARLPKDVLVE
HHHHHHCCCCHHHHHHHHHHEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHH
IEAIAISKA
HHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]