Definition | Psychromonas ingrahamii 37, complete genome. |
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Accession | NC_008709 |
Length | 4,559,598 |
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The map label for this gene is 119947014
Identifier: 119947014
GI number: 119947014
Start: 4213818
End: 4215443
Strand: Reverse
Name: 119947014
Synonym: Ping_3411
Alternate gene names: NA
Gene position: 4215443-4213818 (Counterclockwise)
Preceding gene: 119947015
Following gene: 119947009
Centisome position: 92.45
GC content: 34.75
Gene sequence:
>1626_bases ATGGGGGAATTATTTAAAATAAACCAGCCAAAGCGTATTAAACCAGTCGCTATGATGGAGGCAGCTTTTTCTATAGATAA TTGTAGTAATGAAAGTATTTTTGAAAATTTAGTTTTACCTCAAGTCCCCCCCAGAGACGTAAAACAATTAATACAATTGG TCATGTCTTCTCAATCAGAAAAAATATCATTATTAGAATGGTTTAGTATTTTTGATAATGAAAATTATTTTAAGCAACTT TCCGGAGAAGCTTTAATTAATACTCAAAAAGCACTTTGGAAGTGTATTCTCGAAATCCCAAAGGTTACAAATATTGCTTT ATGGCGTATGTGTTTATATTTTGATAAGCAATATCATATGATGCCATTATTGATAATGGATGCATTTCAGAAGCATGATC GACAAATCAGGTTATTAGATAAGCAAAGAGGCTTAGTCTTAAAGGCTTTAAGTGAGCAAAAAGCAAGTAAAATCGCATAT TTTAGCTTGCAGATTGGCAATAAACCCGAGGATTTCTTAGCTTGCTTAGGCTTACCAAACCAAATCTCATTGGTTGTAAA AGCTCAGGAAGAGTTAGAAAATGTTTTAGTTGAGGTTTGGAAACCAGAGTTATGTGACAACTATGTAAAGATTATTAAGC AATACTCTTATTTGCAAGCAGACACTGCTGTTACAAAGCTCTTATCGCTAAATAAGGAAAAGGCTTTAAATGAGTCACCT GTACTTCTAGATCATTTAAAAGAAAAATATGGGCCTTCAAGTGCGAGCTCTCGTTGGGGGATGTTATCATTACAGGCACA ACATCAATTAAGGGCCGTAATTGGTGCTGGGTGGTTTGCGGAGTTTAAATTATTTATTTTCCAGCTTACCTCTCAAGAGT TAGCCAAGGCACTATCTCTGTCTCCTAAAGATATTAACCAGCTGCAAAAGAGAGTCACTTTCTGGTCTAATTATCAAAGT CGATTCCATAGCTTTAGAGTGTTTTTGCCATTAAAAACAGCGACAATCATAAAAAATAGCAGTTTAAGCCTACCTGAGCA CACATTAATTGAAAGCGGTTGGGATTTAAAAGAAACTGAATTGTGTTTCTTAGAATTTGATAATCATATTGTTGTTGAAT ATTTAAGAGGAAATGCAAGTGGCCTCAAACTTTATGATAAATCAGAAATATCCATTTCAAAATTATTAACAAATGAAAAA CTTAAAGTCTCCAAATTAGCAGAGATTGAATTCAAGAAAGAGCATGACCATCTGTTTTGTTGGCAAAACTCTTGTGAGAA TATGTTGAGAACCGAATTTGAGATACTGCCTGATGATGAAATTACTAGTTTTTTAATCGGTGGGAAATCAGATGTTAGAC AAAACTATGATCATGTAACAGGGTTGCCCAGATTAAGTAGAGAAGATAGATCGGAACGGCAGAGGTGTTTAGGTCGGTCT AAGGGGAAGCGACATGAAAATAAAGCTCGGGAATTCTCCACTGAGGTTCAATTAAATTCAAAAGGGCTCGATAATAATTG GATCGAACTAGAATACTCAGAAGGAAAAAACACTATTCGTGCTGGCGCTAAGTTTCCCAATAAGAAAAAACCAATACTCT CACTAAGAAAAACTAAAGCTTGGTAA
Upstream 100 bases:
>100_bases ATTCACACCACTCTGAGCTGGAAGATAGAAAAGTGATATTTAGAATGCAATTCAAATCAGAAGATGCTTTCAGTAAAGTA TTAAAGTTGAAAAAGTAAGC
Downstream 100 bases:
>100_bases AGGTATAGTAAGCAAAATTCATAATGATGAGTTTATTATTGTTAATTTTTCTGGTGTTACCCATACTAAATTTCCAATAC CTGATTTTAGTAGAGCTGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 541; Mature: 540
Protein sequence:
>541_residues MGELFKINQPKRIKPVAMMEAAFSIDNCSNESIFENLVLPQVPPRDVKQLIQLVMSSQSEKISLLEWFSIFDNENYFKQL SGEALINTQKALWKCILEIPKVTNIALWRMCLYFDKQYHMMPLLIMDAFQKHDRQIRLLDKQRGLVLKALSEQKASKIAY FSLQIGNKPEDFLACLGLPNQISLVVKAQEELENVLVEVWKPELCDNYVKIIKQYSYLQADTAVTKLLSLNKEKALNESP VLLDHLKEKYGPSSASSRWGMLSLQAQHQLRAVIGAGWFAEFKLFIFQLTSQELAKALSLSPKDINQLQKRVTFWSNYQS RFHSFRVFLPLKTATIIKNSSLSLPEHTLIESGWDLKETELCFLEFDNHIVVEYLRGNASGLKLYDKSEISISKLLTNEK LKVSKLAEIEFKKEHDHLFCWQNSCENMLRTEFEILPDDEITSFLIGGKSDVRQNYDHVTGLPRLSREDRSERQRCLGRS KGKRHENKAREFSTEVQLNSKGLDNNWIELEYSEGKNTIRAGAKFPNKKKPILSLRKTKAW
Sequences:
>Translated_541_residues MGELFKINQPKRIKPVAMMEAAFSIDNCSNESIFENLVLPQVPPRDVKQLIQLVMSSQSEKISLLEWFSIFDNENYFKQL SGEALINTQKALWKCILEIPKVTNIALWRMCLYFDKQYHMMPLLIMDAFQKHDRQIRLLDKQRGLVLKALSEQKASKIAY FSLQIGNKPEDFLACLGLPNQISLVVKAQEELENVLVEVWKPELCDNYVKIIKQYSYLQADTAVTKLLSLNKEKALNESP VLLDHLKEKYGPSSASSRWGMLSLQAQHQLRAVIGAGWFAEFKLFIFQLTSQELAKALSLSPKDINQLQKRVTFWSNYQS RFHSFRVFLPLKTATIIKNSSLSLPEHTLIESGWDLKETELCFLEFDNHIVVEYLRGNASGLKLYDKSEISISKLLTNEK LKVSKLAEIEFKKEHDHLFCWQNSCENMLRTEFEILPDDEITSFLIGGKSDVRQNYDHVTGLPRLSREDRSERQRCLGRS KGKRHENKAREFSTEVQLNSKGLDNNWIELEYSEGKNTIRAGAKFPNKKKPILSLRKTKAW >Mature_540_residues GELFKINQPKRIKPVAMMEAAFSIDNCSNESIFENLVLPQVPPRDVKQLIQLVMSSQSEKISLLEWFSIFDNENYFKQLS GEALINTQKALWKCILEIPKVTNIALWRMCLYFDKQYHMMPLLIMDAFQKHDRQIRLLDKQRGLVLKALSEQKASKIAYF SLQIGNKPEDFLACLGLPNQISLVVKAQEELENVLVEVWKPELCDNYVKIIKQYSYLQADTAVTKLLSLNKEKALNESPV LLDHLKEKYGPSSASSRWGMLSLQAQHQLRAVIGAGWFAEFKLFIFQLTSQELAKALSLSPKDINQLQKRVTFWSNYQSR FHSFRVFLPLKTATIIKNSSLSLPEHTLIESGWDLKETELCFLEFDNHIVVEYLRGNASGLKLYDKSEISISKLLTNEKL KVSKLAEIEFKKEHDHLFCWQNSCENMLRTEFEILPDDEITSFLIGGKSDVRQNYDHVTGLPRLSREDRSERQRCLGRSK GKRHENKAREFSTEVQLNSKGLDNNWIELEYSEGKNTIRAGAKFPNKKKPILSLRKTKAW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62561; Mature: 62430
Theoretical pI: Translated: 9.08; Mature: 9.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGELFKINQPKRIKPVAMMEAAFSIDNCSNESIFENLVLPQVPPRDVKQLIQLVMSSQSE CCCCEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC KISLLEWFSIFDNENYFKQLSGEALINTQKALWKCILEIPKVTNIALWRMCLYFDKQYHM HHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHH MPLLIMDAFQKHDRQIRLLDKQRGLVLKALSEQKASKIAYFSLQIGNKPEDFLACLGLPN HHHHHHHHHHHCCCEEEEHHHCCCHHHHHHHHHHHCEEEEEEEEECCCHHHHHHHCCCCC QISLVVKAQEELENVLVEVWKPELCDNYVKIIKQYSYLQADTAVTKLLSLNKEKALNESP CEEEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCC VLLDHLKEKYGPSSASSRWGMLSLQAQHQLRAVIGAGWFAEFKLFIFQLTSQELAKALSL HHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC SPKDINQLQKRVTFWSNYQSRFHSFRVFLPLKTATIIKNSSLSLPEHTLIESGWDLKETE CHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECEEEEEECCCCCCCCHHHHHCCCCCCCCE LCFLEFDNHIVVEYLRGNASGLKLYDKSEISISKLLTNEKLKVSKLAEIEFKKEHDHLFC EEEEEECCCEEEEEECCCCCCCEEECCCCCHHHHHHCCCCCCHHHHHHHEEECCCCEEEE WQNSCENMLRTEFEILPDDEITSFLIGGKSDVRQNYDHVTGLPRLSREDRSERQRCLGRS EHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHCHHHHCCCCCCCHHHHHHHHHHHCCC KGKRHENKAREFSTEVQLNSKGLDNNWIELEYSEGKNTIRAGAKFPNKKKPILSLRKTKA CCCCHHHHHHHHHHHEEECCCCCCCCEEEEEECCCCCCEECCCCCCCCCCCHHHHHHCCC W C >Mature Secondary Structure GELFKINQPKRIKPVAMMEAAFSIDNCSNESIFENLVLPQVPPRDVKQLIQLVMSSQSE CCCEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC KISLLEWFSIFDNENYFKQLSGEALINTQKALWKCILEIPKVTNIALWRMCLYFDKQYHM HHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHH MPLLIMDAFQKHDRQIRLLDKQRGLVLKALSEQKASKIAYFSLQIGNKPEDFLACLGLPN HHHHHHHHHHHCCCEEEEHHHCCCHHHHHHHHHHHCEEEEEEEEECCCHHHHHHHCCCCC QISLVVKAQEELENVLVEVWKPELCDNYVKIIKQYSYLQADTAVTKLLSLNKEKALNESP CEEEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCC VLLDHLKEKYGPSSASSRWGMLSLQAQHQLRAVIGAGWFAEFKLFIFQLTSQELAKALSL HHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC SPKDINQLQKRVTFWSNYQSRFHSFRVFLPLKTATIIKNSSLSLPEHTLIESGWDLKETE CHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECEEEEEECCCCCCCCHHHHHCCCCCCCCE LCFLEFDNHIVVEYLRGNASGLKLYDKSEISISKLLTNEKLKVSKLAEIEFKKEHDHLFC EEEEEECCCEEEEEECCCCCCCEEECCCCCHHHHHHCCCCCCHHHHHHHEEECCCCEEEE WQNSCENMLRTEFEILPDDEITSFLIGGKSDVRQNYDHVTGLPRLSREDRSERQRCLGRS EHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHCHHHHCCCCCCCHHHHHHHHHHHCCC KGKRHENKAREFSTEVQLNSKGLDNNWIELEYSEGKNTIRAGAKFPNKKKPILSLRKTKA CCCCHHHHHHHHHHHEEECCCCCCCCEEEEEECCCCCCEECCCCCCCCCCCHHHHHHCCC W C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA