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The map label for this gene is orn [H]

Identifier: 119946941

GI number: 119946941

Start: 4122992

End: 4123531

Strand: Reverse

Name: orn [H]

Synonym: Ping_3335

Alternate gene names: 119946941

Gene position: 4123531-4122992 (Counterclockwise)

Preceding gene: 119946953

Following gene: 119946940

Centisome position: 90.44

GC content: 41.48

Gene sequence:

>540_bases
ATGAATAAAAATAACCTGGTATGGATTGATTTGGAGATGACCGGTTTAAATCCAGATACGGATAAAATAATCGAAATCGC
CACTATCGTGACGGACAGTGATTTAAATATCCTTGCACAAGGACCTGAATTTGTTATTCATCAAAGTAATCAAGCACTTG
ATGCGATGGATGAATGGTGCACAACGCAGCACGGTAAGTCAGGTTTAACAGATCGTGTGAAGGCCAGTCAGATTAGTTGC
GCGAATGCCGAACAAGCAACCCTCGATTTTTTGAAAGAGTGGGTACCCGCAGGCGCCGCACCGTTATGCGGTAATAGTAT
CGGCCAAGATCGCCGTTTTTTAGTACGTCAGATGCCAGCGTTAGAGGCTTATTTTCATTACCGTAATATTGATGTCAGTA
CTATTAAGGAACTGGGCAACCGTTGGGCACCGGAAATGGTTAATCAGCATAAAAAAACCGGCGCTCACACTGCGCTTCAA
GATATTAAAGAATCAATTTCTGAATTACAGCATTACCAAAAACATTTCTTTAAGTTTTAA

Upstream 100 bases:

>100_bases
TCACAGGTTTCCTTAGCTATCACTCATTGTGTTAATACCGTATCATACTATATTAATTTAGAAATGCGGCTCTCTTGTAG
CGAAAAGGATCAGAATAACG

Downstream 100 bases:

>100_bases
ATCTGTTTTTTGGAGCAGATGGATAATGTCTGCTCAAAAACTCAGCAGACAAGCACTAGTCAATGAAAAATCAGCAGAAA
AAGCTTGCATTCATCTACTC

Product: oligoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MNKNNLVWIDLEMTGLNPDTDKIIEIATIVTDSDLNILAQGPEFVIHQSNQALDAMDEWCTTQHGKSGLTDRVKASQISC
ANAEQATLDFLKEWVPAGAAPLCGNSIGQDRRFLVRQMPALEAYFHYRNIDVSTIKELGNRWAPEMVNQHKKTGAHTALQ
DIKESISELQHYQKHFFKF

Sequences:

>Translated_179_residues
MNKNNLVWIDLEMTGLNPDTDKIIEIATIVTDSDLNILAQGPEFVIHQSNQALDAMDEWCTTQHGKSGLTDRVKASQISC
ANAEQATLDFLKEWVPAGAAPLCGNSIGQDRRFLVRQMPALEAYFHYRNIDVSTIKELGNRWAPEMVNQHKKTGAHTALQ
DIKESISELQHYQKHFFKF
>Mature_179_residues
MNKNNLVWIDLEMTGLNPDTDKIIEIATIVTDSDLNILAQGPEFVIHQSNQALDAMDEWCTTQHGKSGLTDRVKASQISC
ANAEQATLDFLKEWVPAGAAPLCGNSIGQDRRFLVRQMPALEAYFHYRNIDVSTIKELGNRWAPEMVNQHKKTGAHTALQ
DIKESISELQHYQKHFFKF

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides [H]

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Homo sapiens, GI224496106, Length=174, Percent_Identity=51.1494252873563, Blast_Score=188, Evalue=2e-48,
Organism=Escherichia coli, GI87082382, Length=178, Percent_Identity=60.6741573033708, Blast_Score=246, Evalue=9e-67,
Organism=Caenorhabditis elegans, GI17557752, Length=175, Percent_Identity=46.2857142857143, Blast_Score=163, Evalue=6e-41,
Organism=Saccharomyces cerevisiae, GI6323088, Length=182, Percent_Identity=42.3076923076923, Blast_Score=140, Evalue=1e-34,
Organism=Drosophila melanogaster, GI21355135, Length=175, Percent_Identity=46.8571428571429, Blast_Score=182, Evalue=1e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 20240; Mature: 20240

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKNNLVWIDLEMTGLNPDTDKIIEIATIVTDSDLNILAQGPEFVIHQSNQALDAMDEWC
CCCCCEEEEEEEEECCCCCHHHHHHHHHEEECCCCEEEECCCCEEEECCCCHHHHHHHHH
TTQHGKSGLTDRVKASQISCANAEQATLDFLKEWVPAGAAPLCGNSIGQDRRFLVRQMPA
HHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
LEAYFHYRNIDVSTIKELGNRWAPEMVNQHKKTGAHTALQDIKESISELQHYQKHFFKF
HHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNKNNLVWIDLEMTGLNPDTDKIIEIATIVTDSDLNILAQGPEFVIHQSNQALDAMDEWC
CCCCCEEEEEEEEECCCCCHHHHHHHHHEEECCCCEEEECCCCEEEECCCCHHHHHHHHH
TTQHGKSGLTDRVKASQISCANAEQATLDFLKEWVPAGAAPLCGNSIGQDRRFLVRQMPA
HHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
LEAYFHYRNIDVSTIKELGNRWAPEMVNQHKKTGAHTALQDIKESISELQHYQKHFFKF
HHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA