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The map label for this gene is dapF [H]

Identifier: 119946940

GI number: 119946940

Start: 4119944

End: 4121092

Strand: Reverse

Name: dapF [H]

Synonym: Ping_3334

Alternate gene names: 119946940

Gene position: 4121092-4119944 (Counterclockwise)

Preceding gene: 119946941

Following gene: 119946939

Centisome position: 90.38

GC content: 45.87

Gene sequence:

>1149_bases
ATGCAATTTATTCCTTTCGTTAAATATACATCCTGTGGCAATAGTTTTGTTATTGTCGATGAGACCGAGCAGAGTTTGCT
CAGCGAGGATGATATGTCCCGTTTCGCATTCCAGGCGACCAACATCAGTTTCGGTGTAGGTTGTGATAATTTGCTGATTA
TTCAGCGTTGTAATGAATTGTCACTGCAATCGATTAATCGTAGCCGGGACTACTGGATACAACCTCCACAGGAAGAACAG
GCTGAATTTGTGTTTCGAATGTTTGAACCGTCGGGGGAAGAAGCGCTGTGCTGCGGTAACGGTCTGATGTGTATCGCCAG
TTATTTATTGGACAAACATGGTATAAGCAGCGCTTCCATAATGACCGAGATCCCTCTGGCAACACCTAAGGTTATCAAAA
TCGGTACAGATCAGAATCGAGTTGGCAGTTGGGTTAATCTCGGGCATCCGCGTTTAACGCCACCGGAATTGGTGAACGGG
GAGTATGCAGCGTTGGTTGATCCGGCCATTCATGAGATGCAGGAACTGGTCGTTAAGTTTCGCGCTGATGATCTGAAGGC
TTACACAACCGATAACGAGTTACGTATCAGAGCATTGCTGGTGTTTACCGGTGAACCCCATCTGGTGATATTCCCCGATA
GTGACTTTTCAGCACCGGAGCAGGCGGACTATATTTTTGCAGGTTCCAACCAGGGCGTGGAGCGTCGCGAAAGCTTCGGA
TCCTGGCTGGTAGAGCATATCGGCAATTATATGAACAATCATATGCGGCATATCTTCCCCGCGGGTATCAATGTTAATTT
TGCCCGTCGTCTTGCCTCCGGGGTGATAGAAAACCGTTGTTTTGAACGGGGCATCAATAGAGAAACCCTGGCTTGTGGGA
CCGGTGCATTAGCGGTAGCCTATATCTATAGTCAAATGCACAAGCTGAATATCTCAGAAGTTGATGTATTACCCCATCGG
TGTTGTTGGCATGATAAGAAAGCTAAAATTTGTATTAAACAGAATTCTGACGGGTGGCAGATCAGCTCTGATCCGGTTAT
GTTATTCGATGCTGTGTACCGTTTTCCACGAAAAAAGAACAGCTTGCCAGAATTATTAAATAAGGACCATGATGAGATAG
TTACTGAAGACCGGAAACTAGCGGTTTAA

Upstream 100 bases:

>100_bases
ATGAGATATTTTTCCTAAAATACTGCTGCCGGAAGCAAAATAAAAGCAATTTTAAAATTGTACTCAAACTGCAGAATAAG
AAACTGGATACCAACTATAT

Downstream 100 bases:

>100_bases
ATGGTTATTAATCGTTCCATCTCAATACGTCCGGTCACTACTACTGCATTGGTAATGTTACCTCTAAGTCTGATGATTGC
CTATTTATTGCTCAGTATGG

Product: diaminopimelate epimerase

Products: NA

Alternate protein names: DAP epimerase [H]

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MQFIPFVKYTSCGNSFVIVDETEQSLLSEDDMSRFAFQATNISFGVGCDNLLIIQRCNELSLQSINRSRDYWIQPPQEEQ
AEFVFRMFEPSGEEALCCGNGLMCIASYLLDKHGISSASIMTEIPLATPKVIKIGTDQNRVGSWVNLGHPRLTPPELVNG
EYAALVDPAIHEMQELVVKFRADDLKAYTTDNELRIRALLVFTGEPHLVIFPDSDFSAPEQADYIFAGSNQGVERRESFG
SWLVEHIGNYMNNHMRHIFPAGINVNFARRLASGVIENRCFERGINRETLACGTGALAVAYIYSQMHKLNISEVDVLPHR
CCWHDKKAKICIKQNSDGWQISSDPVMLFDAVYRFPRKKNSLPELLNKDHDEIVTEDRKLAV

Sequences:

>Translated_382_residues
MQFIPFVKYTSCGNSFVIVDETEQSLLSEDDMSRFAFQATNISFGVGCDNLLIIQRCNELSLQSINRSRDYWIQPPQEEQ
AEFVFRMFEPSGEEALCCGNGLMCIASYLLDKHGISSASIMTEIPLATPKVIKIGTDQNRVGSWVNLGHPRLTPPELVNG
EYAALVDPAIHEMQELVVKFRADDLKAYTTDNELRIRALLVFTGEPHLVIFPDSDFSAPEQADYIFAGSNQGVERRESFG
SWLVEHIGNYMNNHMRHIFPAGINVNFARRLASGVIENRCFERGINRETLACGTGALAVAYIYSQMHKLNISEVDVLPHR
CCWHDKKAKICIKQNSDGWQISSDPVMLFDAVYRFPRKKNSLPELLNKDHDEIVTEDRKLAV
>Mature_382_residues
MQFIPFVKYTSCGNSFVIVDETEQSLLSEDDMSRFAFQATNISFGVGCDNLLIIQRCNELSLQSINRSRDYWIQPPQEEQ
AEFVFRMFEPSGEEALCCGNGLMCIASYLLDKHGISSASIMTEIPLATPKVIKIGTDQNRVGSWVNLGHPRLTPPELVNG
EYAALVDPAIHEMQELVVKFRADDLKAYTTDNELRIRALLVFTGEPHLVIFPDSDFSAPEQADYIFAGSNQGVERRESFG
SWLVEHIGNYMNNHMRHIFPAGINVNFARRLASGVIENRCFERGINRETLACGTGALAVAYIYSQMHKLNISEVDVLPHR
CCWHDKKAKICIKQNSDGWQISSDPVMLFDAVYRFPRKKNSLPELLNKDHDEIVTEDRKLAV

Specific function: Biosynthesis of lysine from aspartate semialdehyde; sixth step. [C]

COG id: COG0253

COG function: function code E; Diaminopimelate epimerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the diaminopimelate epimerase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001653
- InterPro:   IPR018510 [H]

Pfam domain/function: PF01678 DAP_epimerase [H]

EC number: =5.1.1.7 [H]

Molecular weight: Translated: 43203; Mature: 43203

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFIPFVKYTSCGNSFVIVDETEQSLLSEDDMSRFAFQATNISFGVGCDNLLIIQRCNEL
CCCCCCEEEECCCCEEEEEECCHHHHHCCCHHHHHEEEECCEEEECCCCCEEEEECCCHH
SLQSINRSRDYWIQPPQEEQAEFVFRMFEPSGEEALCCGNGLMCIASYLLDKHGISSASI
HHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCCCHHH
MTEIPLATPKVIKIGTDQNRVGSWVNLGHPRLTPPELVNGEYAALVDPAIHEMQELVVKF
HEECCCCCCCEEEECCCCCCCCCCEECCCCCCCCHHHCCCCHHEEECHHHHHHHHHHHHH
RADDLKAYTTDNELRIRALLVFTGEPHLVIFPDSDFSAPEQADYIFAGSNQGVERRESFG
CCCCCEEEECCCCEEEEEEEEEECCCCEEEECCCCCCCCCCCCEEEECCCCCHHHHHHHH
SWLVEHIGNYMNNHMRHIFPAGINVNFARRLASGVIENRCFERGINRETLACGTGALAVA
HHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHH
YIYSQMHKLNISEVDVLPHRCCWHDKKAKICIKQNSDGWQISSDPVMLFDAVYRFPRKKN
HHHHHHHHCCCHHHHCCCHHHHCCCCCCEEEEEECCCCCEECCCCCHHHHHHHHCCCCCC
SLPELLNKDHDEIVTEDRKLAV
CCHHHHCCCCHHHHCCCCCCCC
>Mature Secondary Structure
MQFIPFVKYTSCGNSFVIVDETEQSLLSEDDMSRFAFQATNISFGVGCDNLLIIQRCNEL
CCCCCCEEEECCCCEEEEEECCHHHHHCCCHHHHHEEEECCEEEECCCCCEEEEECCCHH
SLQSINRSRDYWIQPPQEEQAEFVFRMFEPSGEEALCCGNGLMCIASYLLDKHGISSASI
HHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCCCHHH
MTEIPLATPKVIKIGTDQNRVGSWVNLGHPRLTPPELVNGEYAALVDPAIHEMQELVVKF
HEECCCCCCCEEEECCCCCCCCCCEECCCCCCCCHHHCCCCHHEEECHHHHHHHHHHHHH
RADDLKAYTTDNELRIRALLVFTGEPHLVIFPDSDFSAPEQADYIFAGSNQGVERRESFG
CCCCCEEEECCCCEEEEEEEEEECCCCEEEECCCCCCCCCCCCEEEECCCCCHHHHHHHH
SWLVEHIGNYMNNHMRHIFPAGINVNFARRLASGVIENRCFERGINRETLACGTGALAVA
HHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHH
YIYSQMHKLNISEVDVLPHRCCWHDKKAKICIKQNSDGWQISSDPVMLFDAVYRFPRKKN
HHHHHHHHCCCHHHHCCCHHHHCCCCCCEEEEEECCCCCEECCCCCHHHHHHHHCCCCCC
SLPELLNKDHDEIVTEDRKLAV
CCHHHHCCCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA