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The map label for this gene is xerC [H]

Identifier: 119945594

GI number: 119945594

Start: 2313458

End: 2314453

Strand: Reverse

Name: xerC [H]

Synonym: Ping_1900

Alternate gene names: 119945594

Gene position: 2314453-2313458 (Counterclockwise)

Preceding gene: 119945595

Following gene: 119945589

Centisome position: 50.76

GC content: 35.94

Gene sequence:

>996_bases
ATGGACTCCTCAACGGGACTTATAGACAGCCAAACAGAAGATATTTTTTTCGATAAAAGAAAGATGCTCAGTGATGCTAA
TCACTCTACTTTTTATATCGGACCGGCAGAGTCTTATATGAGAACACTTTCCGATCTCAGTCAATCAACCGTACGCTCCT
ACTTACGCAATATAGCACGAATTTTTGATAAAAATATTGAAGATTTTCCCTGGCATCAGCTTGATCAGGATGTTGTTATT
TATATTTTGGATAACCTGACCAAAACAGGATTAGCGCCCGGCACAGTGGGATCATACTTATCCGCTATAAAAGGGGTTTG
TCTGTCGGCACTTAATAAAAAGACCATGTCTCCCGAAAGACATCATCTGATCAATATAATTAAAAAGCCCAAAGGCTCGC
GGATCAAAAAAGAAGGAACGCTTCTTTCAGCTGAAAATATAAAGGACCTTATTAAGAGCTGTGATCAGGACTTAAATAAA
ACCAAAGGAGTAAGGGATAAAGCCATTATTATTATTCTTCGAGGATGCGGATTAAGAAGAACTGAGCTTATTAATATCAG
AATAAACAGAATAAATTTTACAGAGAAAAAGCTTACGGTTGTCGGTAAAAGCAATAAAGAAAGAGAAATTTGGTTTAGTG
ACAGAGTGAAAGAGGCAATATCAGATTGGCTTGGGTTGATAAATAAAGCATCACTTCAAATAAGTGATGATAATTTTTTA
TTCCTAAGAGCCCATAAATCGGGAAAAATTATAAACCAAAGAATTTGCTCACAAACTATTTTTGATATTTTTCAGGCAAA
ACAAAAATTGATGATGGTTAAAAAATTCGGCCCCCATGATTTTAGACGGACCTATATTACCGAGCTGATTAATGATGGCA
ATGCGATTGAAGATATTCAGGGTCTGGTAGGACATTCAAGTCCGGAAACAACGCGGGTTTATGACCTTAACAAAAAAAGA
AATCTCAAGAAAATTGGTCAGGATATTGTTTTTTAG

Upstream 100 bases:

>100_bases
AAAAGACTGACAACTTGATTTTTAAGGGGTTTTTACGTATAAATACGGGTAATGGCAATTTTATGGACACAATCAAAAGG
CAGTAAGGATGACTGAATTA

Downstream 100 bases:

>100_bases
GTATTGTTTTATAGGTATTATTTTTTAGGTATTATTTTTAGGTATTGTTTTTAGAGATAGCTTTTAGAGATAGCTTTGTA
AATAATCTTATATTTCGTCA

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MDSSTGLIDSQTEDIFFDKRKMLSDANHSTFYIGPAESYMRTLSDLSQSTVRSYLRNIARIFDKNIEDFPWHQLDQDVVI
YILDNLTKTGLAPGTVGSYLSAIKGVCLSALNKKTMSPERHHLINIIKKPKGSRIKKEGTLLSAENIKDLIKSCDQDLNK
TKGVRDKAIIIILRGCGLRRTELINIRINRINFTEKKLTVVGKSNKEREIWFSDRVKEAISDWLGLINKASLQISDDNFL
FLRAHKSGKIINQRICSQTIFDIFQAKQKLMMVKKFGPHDFRRTYITELINDGNAIEDIQGLVGHSSPETTRVYDLNKKR
NLKKIGQDIVF

Sequences:

>Translated_331_residues
MDSSTGLIDSQTEDIFFDKRKMLSDANHSTFYIGPAESYMRTLSDLSQSTVRSYLRNIARIFDKNIEDFPWHQLDQDVVI
YILDNLTKTGLAPGTVGSYLSAIKGVCLSALNKKTMSPERHHLINIIKKPKGSRIKKEGTLLSAENIKDLIKSCDQDLNK
TKGVRDKAIIIILRGCGLRRTELINIRINRINFTEKKLTVVGKSNKEREIWFSDRVKEAISDWLGLINKASLQISDDNFL
FLRAHKSGKIINQRICSQTIFDIFQAKQKLMMVKKFGPHDFRRTYITELINDGNAIEDIQGLVGHSSPETTRVYDLNKKR
NLKKIGQDIVF
>Mature_331_residues
MDSSTGLIDSQTEDIFFDKRKMLSDANHSTFYIGPAESYMRTLSDLSQSTVRSYLRNIARIFDKNIEDFPWHQLDQDVVI
YILDNLTKTGLAPGTVGSYLSAIKGVCLSALNKKTMSPERHHLINIIKKPKGSRIKKEGTLLSAENIKDLIKSCDQDLNK
TKGVRDKAIIIILRGCGLRRTELINIRINRINFTEKKLTVVGKSNKEREIWFSDRVKEAISDWLGLINKASLQISDDNFL
FLRAHKSGKIINQRICSQTIFDIFQAKQKLMMVKKFGPHDFRRTYITELINDGNAIEDIQGLVGHSSPETTRVYDLNKKR
NLKKIGQDIVF

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=285, Percent_Identity=28.0701754385965, Blast_Score=90, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 37809; Mature: 37809

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSSTGLIDSQTEDIFFDKRKMLSDANHSTFYIGPAESYMRTLSDLSQSTVRSYLRNIAR
CCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
IFDKNIEDFPWHQLDQDVVIYILDNLTKTGLAPGTVGSYLSAIKGVCLSALNKKTMSPER
HHHCCCCCCCCHHCCCHHEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHH
HHLINIIKKPKGSRIKKEGTLLSAENIKDLIKSCDQDLNKTKGVRDKAIIIILRGCGLRR
HHHHHHHHCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
TELINIRINRINFTEKKLTVVGKSNKEREIWFSDRVKEAISDWLGLINKASLQISDDNFL
EEEEEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCEEEECCCCEE
FLRAHKSGKIINQRICSQTIFDIFQAKQKLMMVKKFGPHDFRRTYITELINDGNAIEDIQ
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHH
GLVGHSSPETTRVYDLNKKRNLKKIGQDIVF
HHHCCCCCCCCEEEECCHHHHHHHHHHHCCC
>Mature Secondary Structure
MDSSTGLIDSQTEDIFFDKRKMLSDANHSTFYIGPAESYMRTLSDLSQSTVRSYLRNIAR
CCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
IFDKNIEDFPWHQLDQDVVIYILDNLTKTGLAPGTVGSYLSAIKGVCLSALNKKTMSPER
HHHCCCCCCCCHHCCCHHEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHH
HHLINIIKKPKGSRIKKEGTLLSAENIKDLIKSCDQDLNKTKGVRDKAIIIILRGCGLRR
HHHHHHHHCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
TELINIRINRINFTEKKLTVVGKSNKEREIWFSDRVKEAISDWLGLINKASLQISDDNFL
EEEEEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCEEEECCCCEE
FLRAHKSGKIINQRICSQTIFDIFQAKQKLMMVKKFGPHDFRRTYITELINDGNAIEDIQ
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHH
GLVGHSSPETTRVYDLNKKRNLKKIGQDIVF
HHHCCCCCCCCEEEECCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA