Definition | Psychromonas ingrahamii 37, complete genome. |
---|---|
Accession | NC_008709 |
Length | 4,559,598 |
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The map label for this gene is aroH [H]
Identifier: 119945429
GI number: 119945429
Start: 2101442
End: 2102788
Strand: Reverse
Name: aroH [H]
Synonym: Ping_1726
Alternate gene names: 119945429
Gene position: 2102788-2101442 (Counterclockwise)
Preceding gene: 119945436
Following gene: 119945428
Centisome position: 46.12
GC content: 47.14
Gene sequence:
>1347_bases ATGACCCAATGGACACCCTCAAGCTGGAGAAATAAACCAGTACAACAACTGCCCTCTTACCCTGATCAAGACAAACTTCA ACAAACCGAGCACTATTTGGCTAATCAACCCCCTTTAGTCTTTGCCGGTGAAGCACGTGCTTTGCGTGAAGATTTGGCAA AAGTAGCTAAGGGAGAAGCGTTTTTGCTGCAGGGAGGCGATTGCGCAGAAAGTTTTGACGAGTTTCGTACCAGTCATATT CGCGATACTTTTAAAGCCTTAATGCAGATGGCAGTAGTATTAACCTTTGGCGGGCAAAAGCCGGTGGTAAAAATTGGCCG CATTGCAGGACAATTTGCTAAACCGCGTAGCGCTGATATGGAAACCATCAACGGTCTAAGCTTACCTTCCTATCGCGGTG ATATTATTAACGGCATTGATTTTAATGAAAAAAGTCGCCTGCCAGATCCACAACGTATGGTGACAGCGTACAACCAATCA ACTTCTACCCTTAATTTGCTGCGTGCTTTTGCTCAAGGGGGGCTCGCCGATCTAAATCAAGTTCATCAATGGAACCTGGA TTTTATTAAGAAAAGCCCACTTGGTAAGCGTTATGAAACATTAGCCGGTAGTATTGAAGACTCGCTGGCTTTTATGAATG CTTGCGGGATTAATCCCGCTACCGCACCACAGCTGCGCGAAACCACTTTATACACGTCGCACGAAGCTCTGTTACTGCCC TATGAGCAGGCGTTAACCCGTTGCGATAGTCTTACGGGTAAATGGTATGACTGTTCGGCGCACATGCTGTGGATTGGTGA TCGTACTCGGCAAATCGACCATGCACATATAGAATTCTTACGCGGGGTCGAAAACCCAATTGGCATAAAAGTAGGCCCAA GTACGGTTCCTGAAGAACTGCTGCGTATTATCGACATTGTTAATCCGAACAACGAAGCGGGCCGTTTGAATTTAATTGTG CGGATGGGCGCAGATAAAGTGGCAGATCACCTGCCAGCACTTATTGGCGCGATCGAGCGCGAGGGTAAAAACGTAGTCTG GAGCTCAGACCCGATGCACGGCAATACTATTAAAGCGCCAAACGGCTACAAAACGCGTCGTGTGAACGATATATTGCGTG AAGTGCAGCAATTCTTTCAAATTCATAAAGCGGAAGGCTCTTACGCAGGTGGGGTTCACTTTGAAATGACCGGCCGTAAC GTCACTGAATGTGTCGGCGGCGCTTTCCAAATTACAGAGCATGATCTGGCACAGCGTTACCATACCTACTGTGATCCACG CTTAAATGCCGATCAGGCACTGGAGTTAGCCTTTTTGATTGCAGAACACATTAAAGCTGCGAGATGA
Upstream 100 bases:
>100_bases TCCCCGGTCCGCAAGCCAATCTCACACATAAAAAAATAAGTGCTTTTCATGTGCCGAATAATGCCTATTATAGATTCTTT ATCGCTCTTGGAAATCAACT
Downstream 100 bases:
>100_bases TGCCCACTCCACTCATCAGGCTGTCTATTTAGGCTCTCTAAAAAATGCATAATAAATAGGAAAAAAGTGGATTTTCTATT CATTAACCCGAATTCGGGAT
Product: 2-dehydro-3-deoxyphosphoheptonate aldolase
Products: NA
Alternate protein names: 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase; DAHP synthase; Phospho-2-keto-3-deoxyheptonate aldolase [H]
Number of amino acids: Translated: 448; Mature: 447
Protein sequence:
>448_residues MTQWTPSSWRNKPVQQLPSYPDQDKLQQTEHYLANQPPLVFAGEARALREDLAKVAKGEAFLLQGGDCAESFDEFRTSHI RDTFKALMQMAVVLTFGGQKPVVKIGRIAGQFAKPRSADMETINGLSLPSYRGDIINGIDFNEKSRLPDPQRMVTAYNQS TSTLNLLRAFAQGGLADLNQVHQWNLDFIKKSPLGKRYETLAGSIEDSLAFMNACGINPATAPQLRETTLYTSHEALLLP YEQALTRCDSLTGKWYDCSAHMLWIGDRTRQIDHAHIEFLRGVENPIGIKVGPSTVPEELLRIIDIVNPNNEAGRLNLIV RMGADKVADHLPALIGAIEREGKNVVWSSDPMHGNTIKAPNGYKTRRVNDILREVQQFFQIHKAEGSYAGGVHFEMTGRN VTECVGGAFQITEHDLAQRYHTYCDPRLNADQALELAFLIAEHIKAAR
Sequences:
>Translated_448_residues MTQWTPSSWRNKPVQQLPSYPDQDKLQQTEHYLANQPPLVFAGEARALREDLAKVAKGEAFLLQGGDCAESFDEFRTSHI RDTFKALMQMAVVLTFGGQKPVVKIGRIAGQFAKPRSADMETINGLSLPSYRGDIINGIDFNEKSRLPDPQRMVTAYNQS TSTLNLLRAFAQGGLADLNQVHQWNLDFIKKSPLGKRYETLAGSIEDSLAFMNACGINPATAPQLRETTLYTSHEALLLP YEQALTRCDSLTGKWYDCSAHMLWIGDRTRQIDHAHIEFLRGVENPIGIKVGPSTVPEELLRIIDIVNPNNEAGRLNLIV RMGADKVADHLPALIGAIEREGKNVVWSSDPMHGNTIKAPNGYKTRRVNDILREVQQFFQIHKAEGSYAGGVHFEMTGRN VTECVGGAFQITEHDLAQRYHTYCDPRLNADQALELAFLIAEHIKAAR >Mature_447_residues TQWTPSSWRNKPVQQLPSYPDQDKLQQTEHYLANQPPLVFAGEARALREDLAKVAKGEAFLLQGGDCAESFDEFRTSHIR DTFKALMQMAVVLTFGGQKPVVKIGRIAGQFAKPRSADMETINGLSLPSYRGDIINGIDFNEKSRLPDPQRMVTAYNQST STLNLLRAFAQGGLADLNQVHQWNLDFIKKSPLGKRYETLAGSIEDSLAFMNACGINPATAPQLRETTLYTSHEALLLPY EQALTRCDSLTGKWYDCSAHMLWIGDRTRQIDHAHIEFLRGVENPIGIKVGPSTVPEELLRIIDIVNPNNEAGRLNLIVR MGADKVADHLPALIGAIEREGKNVVWSSDPMHGNTIKAPNGYKTRRVNDILREVQQFFQIHKAEGSYAGGVHFEMTGRNV TECVGGAFQITEHDLAQRYHTYCDPRLNADQALELAFLIAEHIKAAR
Specific function: Unknown
COG id: COG3200
COG function: function code E; 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II DAHP synthase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002480 [H]
Pfam domain/function: PF01474 DAHP_synth_2 [H]
EC number: =2.5.1.54 [H]
Molecular weight: Translated: 50020; Mature: 49889
Theoretical pI: Translated: 6.88; Mature: 6.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQWTPSSWRNKPVQQLPSYPDQDKLQQTEHYLANQPPLVFAGEARALREDLAKVAKGEA CCCCCCCHHCCCCHHHCCCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHCCCE FLLQGGDCAESFDEFRTSHIRDTFKALMQMAVVLTFGGQKPVVKIGRIAGQFAKPRSADM EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCH ETINGLSLPSYRGDIINGIDFNEKSRLPDPQRMVTAYNQSTSTLNLLRAFAQGGLADLNQ HHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHH VHQWNLDFIKKSPLGKRYETLAGSIEDSLAFMNACGINPATAPQLRETTLYTSHEALLLP HHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHEEEECCCEEEEC YEQALTRCDSLTGKWYDCSAHMLWIGDRTRQIDHAHIEFLRGVENPIGIKVGPSTVPEEL HHHHHHHHHHCCCCEEECCEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEECCCHHHHHH LRIIDIVNPNNEAGRLNLIVRMGADKVADHLPALIGAIEREGKNVVWSSDPMHGNTIKAP HHHHHHCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEECCC NGYKTRRVNDILREVQQFFQIHKAEGSYAGGVHFEMTGRNVTECVGGAFQITEHDLAQRY CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHCCCCEEEHHHHHHHHH HTYCDPRLNADQALELAFLIAEHIKAAR HHHCCCCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TQWTPSSWRNKPVQQLPSYPDQDKLQQTEHYLANQPPLVFAGEARALREDLAKVAKGEA CCCCCCHHCCCCHHHCCCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHCCCE FLLQGGDCAESFDEFRTSHIRDTFKALMQMAVVLTFGGQKPVVKIGRIAGQFAKPRSADM EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCH ETINGLSLPSYRGDIINGIDFNEKSRLPDPQRMVTAYNQSTSTLNLLRAFAQGGLADLNQ HHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHH VHQWNLDFIKKSPLGKRYETLAGSIEDSLAFMNACGINPATAPQLRETTLYTSHEALLLP HHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHEEEECCCEEEEC YEQALTRCDSLTGKWYDCSAHMLWIGDRTRQIDHAHIEFLRGVENPIGIKVGPSTVPEEL HHHHHHHHHHCCCCEEECCEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEECCCHHHHHH LRIIDIVNPNNEAGRLNLIVRMGADKVADHLPALIGAIEREGKNVVWSSDPMHGNTIKAP HHHHHHCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEECCC NGYKTRRVNDILREVQQFFQIHKAEGSYAGGVHFEMTGRNVTECVGGAFQITEHDLAQRY CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHCCCCEEEHHHHHHHHH HTYCDPRLNADQALELAFLIAEHIKAAR HHHCCCCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12000953; 8760910 [H]