Definition | Psychromonas ingrahamii 37, complete genome. |
---|---|
Accession | NC_008709 |
Length | 4,559,598 |
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The map label for this gene is 119945384
Identifier: 119945384
GI number: 119945384
Start: 2031114
End: 2032220
Strand: Reverse
Name: 119945384
Synonym: Ping_1673
Alternate gene names: NA
Gene position: 2032220-2031114 (Counterclockwise)
Preceding gene: 119945385
Following gene: 119945383
Centisome position: 44.57
GC content: 46.88
Gene sequence:
>1107_bases ATGGCACAAGGTAAATTAACAGTAACCGATATTGCGGCGGCAATTAAAAAAGAGGGGTTAAGTTGGCAAGCCGGTGAGAC AGATATTTCCATGCTGCCGGCGGCAGAAAGGAAAAACTATCTTGGATTGAACGTCACGAAGGCTGAACTGACGCAAATGG CGAATGCCGTAAAAAAACAAGCTGCAGAAGAAACACAAGCTTTTAAAGTAGGCTCTGGATATGGCGCTCCTACCGCGATG GATTGGAGGAATGTATCAGGTAAGAATTACATAACGAGTGTTAAGAATCAGGGCGGATGTGGATCCTGTGTCTCCTTTGG GACTTGTGCGACCATAGAATCTAATATGCGTATTAAGGCCCAAGACCACACTCTGGCGCTTGATCTTTCTGAAGCATTTA TGCAGTTCTGTGGAGGTGGAAGCTGCGGTGGTTGGGGATTAACTTCTGGGCTTGATTACGCTAAAAGCACCGGTGTTACT GATGAAGCCTGCTTTCCCTATCAACCTAAAAACATGCCTTGTACTGATCGCTGCAGCGATTGGCAATCGCGCCTGGTAAA AATCTTAAACTACGCCAGTCACAGCAGTATGCAGGCTCGAAAAGATGCCATTGCCAAGGGACCTGTGGTAGCAGGTATGG CGGTTTTTACTGATTTTTATAACTACGCGGGGGGAGTTTATCGGAAATCATCTGCTGCAAACAACGAGCTGGAAGGTTAT CACTGTGTTAGCGTCGTCGGCTATGATGACAACCAGCAATGCTGGATTATCAAAAATAGCTGGGGACCTGGCTGGGGTGA GAACGGTTTTATTCGAATAGCATACAATCAAGCTGACTTGCTGATAGATACGGGTTGGGCATTCTACTCGGTAGATACCG ATGTTCAGCCTGCGAAGGGCAGTGGAGCCGCCAAGTATCTTCTAGTCGATAAGCGCTTTGGTGGTAATGTTGTTTTTTGG GCTTACGCCGGAGACCAATGGCGTTACAAAGTTATCTCAGATGCAGATTTGGCCGGATTCCCCCAAGAAGCATTTGCAGC AAATCGTGTCGATATCTACTGGGATAAAGATCAGATCACACTGGTCCGCCCATGGAAGAATCTATAA
Upstream 100 bases:
>100_bases AATACCTGGGGCTTTTCGAAGCAATAGAGATTTTAGACAAAATAGCCAGGTCTAAAGTAAATTGATTTTCTCTTTACTTG GACCGATTGAGGAGATAAAA
Downstream 100 bases:
>100_bases TAAAGACGTTATTTATCAACTTGGATAAGTGGTTTATATCGACTGAATCCTTGGTGTCGCATCAAACATGCGATGGCATT ATATTTAGTCACTAAATATT
Product: peptidase C1A, papain
Products: NA
Alternate protein names: Dipeptidyl-Peptidase I; Peptidase C1A; Conserved Repeat Domain Protein; Serine Protease; Cysteine Peptidase
Number of amino acids: Translated: 368; Mature: 367
Protein sequence:
>368_residues MAQGKLTVTDIAAAIKKEGLSWQAGETDISMLPAAERKNYLGLNVTKAELTQMANAVKKQAAEETQAFKVGSGYGAPTAM DWRNVSGKNYITSVKNQGGCGSCVSFGTCATIESNMRIKAQDHTLALDLSEAFMQFCGGGSCGGWGLTSGLDYAKSTGVT DEACFPYQPKNMPCTDRCSDWQSRLVKILNYASHSSMQARKDAIAKGPVVAGMAVFTDFYNYAGGVYRKSSAANNELEGY HCVSVVGYDDNQQCWIIKNSWGPGWGENGFIRIAYNQADLLIDTGWAFYSVDTDVQPAKGSGAAKYLLVDKRFGGNVVFW AYAGDQWRYKVISDADLAGFPQEAFAANRVDIYWDKDQITLVRPWKNL
Sequences:
>Translated_368_residues MAQGKLTVTDIAAAIKKEGLSWQAGETDISMLPAAERKNYLGLNVTKAELTQMANAVKKQAAEETQAFKVGSGYGAPTAM DWRNVSGKNYITSVKNQGGCGSCVSFGTCATIESNMRIKAQDHTLALDLSEAFMQFCGGGSCGGWGLTSGLDYAKSTGVT DEACFPYQPKNMPCTDRCSDWQSRLVKILNYASHSSMQARKDAIAKGPVVAGMAVFTDFYNYAGGVYRKSSAANNELEGY HCVSVVGYDDNQQCWIIKNSWGPGWGENGFIRIAYNQADLLIDTGWAFYSVDTDVQPAKGSGAAKYLLVDKRFGGNVVFW AYAGDQWRYKVISDADLAGFPQEAFAANRVDIYWDKDQITLVRPWKNL >Mature_367_residues AQGKLTVTDIAAAIKKEGLSWQAGETDISMLPAAERKNYLGLNVTKAELTQMANAVKKQAAEETQAFKVGSGYGAPTAMD WRNVSGKNYITSVKNQGGCGSCVSFGTCATIESNMRIKAQDHTLALDLSEAFMQFCGGGSCGGWGLTSGLDYAKSTGVTD EACFPYQPKNMPCTDRCSDWQSRLVKILNYASHSSMQARKDAIAKGPVVAGMAVFTDFYNYAGGVYRKSSAANNELEGYH CVSVVGYDDNQQCWIIKNSWGPGWGENGFIRIAYNQADLLIDTGWAFYSVDTDVQPAKGSGAAKYLLVDKRFGGNVVFWA YAGDQWRYKVISDADLAGFPQEAFAANRVDIYWDKDQITLVRPWKNL
Specific function: Unknown
COG id: COG4870
COG function: function code O; Cysteine protease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI189083844, Length=222, Percent_Identity=32.8828828828829, Blast_Score=119, Evalue=5e-27, Organism=Homo sapiens, GI23110960, Length=243, Percent_Identity=29.6296296296296, Blast_Score=98, Evalue=9e-21, Organism=Homo sapiens, GI23110962, Length=251, Percent_Identity=29.0836653386454, Blast_Score=95, Evalue=1e-19, Organism=Homo sapiens, GI22538442, Length=216, Percent_Identity=31.4814814814815, Blast_Score=95, Evalue=1e-19, Organism=Homo sapiens, GI4503155, Length=253, Percent_Identity=28.0632411067194, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI22202619, Length=253, Percent_Identity=28.0632411067194, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI4503151, Length=277, Percent_Identity=28.158844765343, Blast_Score=93, Evalue=4e-19, Organism=Homo sapiens, GI23110955, Length=203, Percent_Identity=32.0197044334975, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI22538437, Length=231, Percent_Identity=28.1385281385281, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI22538435, Length=231, Percent_Identity=28.1385281385281, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI22538433, Length=231, Percent_Identity=28.1385281385281, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI22538431, Length=231, Percent_Identity=28.1385281385281, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI4503139, Length=231, Percent_Identity=28.1385281385281, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI224586907, Length=111, Percent_Identity=35.1351351351351, Blast_Score=67, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17562680, Length=231, Percent_Identity=32.034632034632, Blast_Score=100, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17569349, Length=258, Percent_Identity=29.4573643410853, Blast_Score=99, Evalue=5e-21, Organism=Caenorhabditis elegans, GI115533516, Length=260, Percent_Identity=28.8461538461538, Blast_Score=96, Evalue=4e-20, Organism=Caenorhabditis elegans, GI115533514, Length=260, Percent_Identity=28.8461538461538, Blast_Score=95, Evalue=5e-20, Organism=Caenorhabditis elegans, GI71985272, Length=222, Percent_Identity=30.1801801801802, Blast_Score=94, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17563798, Length=211, Percent_Identity=31.2796208530806, Blast_Score=92, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17543258, Length=200, Percent_Identity=30, Blast_Score=85, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17559066, Length=218, Percent_Identity=28.8990825688073, Blast_Score=81, Evalue=9e-16, Organism=Caenorhabditis elegans, GI71993922, Length=203, Percent_Identity=30.0492610837438, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17561570, Length=269, Percent_Identity=26.0223048327138, Blast_Score=79, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17565984, Length=294, Percent_Identity=27.5510204081633, Blast_Score=77, Evalue=2e-14, Organism=Caenorhabditis elegans, GI71984043, Length=252, Percent_Identity=26.984126984127, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193209594, Length=252, Percent_Identity=26.984126984127, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI25146613, Length=252, Percent_Identity=26.984126984127, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI115532742, Length=201, Percent_Identity=28.8557213930348, Blast_Score=73, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17556460, Length=201, Percent_Identity=29.3532338308458, Blast_Score=71, Evalue=1e-12, Organism=Caenorhabditis elegans, GI32566081, Length=229, Percent_Identity=25.764192139738, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71986664, Length=218, Percent_Identity=27.0642201834862, Blast_Score=68, Evalue=7e-12, Organism=Caenorhabditis elegans, GI193202653, Length=241, Percent_Identity=28.6307053941909, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17565164, Length=226, Percent_Identity=25.2212389380531, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI25153428, Length=213, Percent_Identity=29.1079812206573, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI19922198, Length=216, Percent_Identity=33.7962962962963, Blast_Score=88, Evalue=1e-17, Organism=Drosophila melanogaster, GI24657813, Length=205, Percent_Identity=31.219512195122, Blast_Score=84, Evalue=2e-16, Organism=Drosophila melanogaster, GI24657819, Length=205, Percent_Identity=31.219512195122, Blast_Score=84, Evalue=2e-16, Organism=Drosophila melanogaster, GI45552699, Length=207, Percent_Identity=32.3671497584541, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI24654437, Length=207, Percent_Identity=32.3671497584541, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI24654439, Length=207, Percent_Identity=32.3671497584541, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI19922450, Length=207, Percent_Identity=32.3671497584541, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI24654434, Length=207, Percent_Identity=32.3671497584541, Blast_Score=82, Evalue=5e-16, Organism=Drosophila melanogaster, GI21357391, Length=213, Percent_Identity=28.169014084507, Blast_Score=81, Evalue=1e-15, Organism=Drosophila melanogaster, GI24653516, Length=217, Percent_Identity=29.4930875576037, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI24653518, Length=217, Percent_Identity=29.4930875576037, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI24653514, Length=222, Percent_Identity=29.7297297297297, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI24644155, Length=209, Percent_Identity=29.6650717703349, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI24644153, Length=209, Percent_Identity=29.6650717703349, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI24583376, Length=280, Percent_Identity=28.2142857142857, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI24644496, Length=162, Percent_Identity=27.7777777777778, Blast_Score=68, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40144; Mature: 40013
Theoretical pI: Translated: 6.72; Mature: 6.72
Prosite motif: PS00639 THIOL_PROTEASE_HIS ; PS00640 THIOL_PROTEASE_ASN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQGKLTVTDIAAAIKKEGLSWQAGETDISMLPAAERKNYLGLNVTKAELTQMANAVKKQ CCCCCEEHHHHHHHHHHCCCCCCCCCCCEEECCCHHCCCCCCCEEHHHHHHHHHHHHHHH AAEETQAFKVGSGYGAPTAMDWRNVSGKNYITSVKNQGGCGSCVSFGTCATIESNMRIKA HHHHHHEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHCCCEEEEEECCCEEEE QDHTLALDLSEAFMQFCGGGSCGGWGLTSGLDYAKSTGVTDEACFPYQPKNMPCTDRCSD CCCEEEEEHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHH WQSRLVKILNYASHSSMQARKDAIAKGPVVAGMAVFTDFYNYAGGVYRKSSAANNELEGY HHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCE HCVSVVGYDDNQQCWIIKNSWGPGWGENGFIRIAYNQADLLIDTGWAFYSVDTDVQPAKG EEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEECCEEEEEECCCCCCCCC SGAAKYLLVDKRFGGNVVFWAYAGDQWRYKVISDADLAGFPQEAFAANRVDIYWDKDQIT CCCEEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCCCCCHHHHCCCCEEEEECCCCEE LVRPWKNL EECCCCCC >Mature Secondary Structure AQGKLTVTDIAAAIKKEGLSWQAGETDISMLPAAERKNYLGLNVTKAELTQMANAVKKQ CCCCEEHHHHHHHHHHCCCCCCCCCCCEEECCCHHCCCCCCCEEHHHHHHHHHHHHHHH AAEETQAFKVGSGYGAPTAMDWRNVSGKNYITSVKNQGGCGSCVSFGTCATIESNMRIKA HHHHHHEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHCCCEEEEEECCCEEEE QDHTLALDLSEAFMQFCGGGSCGGWGLTSGLDYAKSTGVTDEACFPYQPKNMPCTDRCSD CCCEEEEEHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHH WQSRLVKILNYASHSSMQARKDAIAKGPVVAGMAVFTDFYNYAGGVYRKSSAANNELEGY HHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCE HCVSVVGYDDNQQCWIIKNSWGPGWGENGFIRIAYNQADLLIDTGWAFYSVDTDVQPAKG EEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEECCEEEEEECCCCCCCCC SGAAKYLLVDKRFGGNVVFWAYAGDQWRYKVISDADLAGFPQEAFAANRVDIYWDKDQIT CCCEEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCCCCCHHHHCCCCEEEEECCCCEE LVRPWKNL EECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA