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The map label for this gene is rarD [C]

Identifier: 119944488

GI number: 119944488

Start: 910762

End: 911646

Strand: Direct

Name: rarD [C]

Synonym: Ping_0717

Alternate gene names: 119944488

Gene position: 910762-911646 (Clockwise)

Preceding gene: 119944487

Following gene: 119944489

Centisome position: 19.97

GC content: 38.42

Gene sequence:

>885_bases
ATGAAAGATCTTTCTCAAACGCAGCTTGGTATTGTCTATGCGCTTAGTGCCTATCTCCTGTGGGGAATTAACCCCATCTT
TTTTAAGTATCTTGGGTTTATTCCTGTTTATGAAATACTCGCGCATCGGGTGATCTGGTCGGTGGTGTTTATCGCCATTG
TTATCACTTTTCTGGGGGGATGGGGAAAAGCGCTGAGTATCCTTAAAACACCTAAAAACATTTTATTTTTAACCTGTACG
AGTCTCTTAATTTCGGTCAATTGGAGCGTTTTTATTTGGGCGATAAATAATGGACGTATGTTAGAGGCAAGTTTAGGGTA
TTTTATTAACCCGCTTATTAATGTTGTTTTGGGTTTGGTTTTCCTGAATGAAGCCTTAAGCAGAGTCAAATGGATTGCTG
TCTCATTAGCCCTGATCGGTGTGCTTATTCAGGTTGTACAGGTAGGCAGTTTACCCTGGGTTTCTTTAGTATTGCCCATT
AGTTTTGGGTTTTATGGTTTATTGCGTAAAAAAATTAAAATTGAAGCCCTAATTGGCTTGTTTTTTGAAACCTTATTAGT
GTTACCCGTGGCATTATATTACCTGTTTTTTGTCGCTAACGGTGAAAACGTGAATATGCTTAATAATAATTGGTCGTTAA
ATCTTTGGTTAATGTTTACCGGTATTGCGACCGCGATGCCGCTTTTCTTTTTCGCACAAGCGGCATTACGTTTAAAACTG
TCAACTCTGGGATTTTTCCAATATCTTGCCCCCTCAATGATGTTTCTGATGGCAGTGTTTATCTATGGTGAAGTATTAAG
TTTGGCGAGAATCATCACTTTTATCTTTATCTGGGCGGGTATCTTGTTATTTGCTGGTGAGAATAAGCTTAAAAAGTGGT
TATAA

Upstream 100 bases:

>100_bases
TTGCAATGTCCGGCAAGGTTTCTAAAACCGTTCGTGGCAGGTTTCGCTAACTTATTTTTAACACGCTTTATTCTCCCCCC
GACTCGCCTTAGAGGTAACA

Downstream 100 bases:

>100_bases
GTCTGGTTTATCAGAGTAGTTACTAAAAAATAATACTGGATATTTACTCAGTTGTTTTTTATGCTTGTCGCATTATATTA
TTAGCTAGGATGTTAGAATG

Product: transporter DMT superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MKDLSQTQLGIVYALSAYLLWGINPIFFKYLGFIPVYEILAHRVIWSVVFIAIVITFLGGWGKALSILKTPKNILFLTCT
SLLISVNWSVFIWAINNGRMLEASLGYFINPLINVVLGLVFLNEALSRVKWIAVSLALIGVLIQVVQVGSLPWVSLVLPI
SFGFYGLLRKKIKIEALIGLFFETLLVLPVALYYLFFVANGENVNMLNNNWSLNLWLMFTGIATAMPLFFFAQAALRLKL
STLGFFQYLAPSMMFLMAVFIYGEVLSLARIITFIFIWAGILLFAGENKLKKWL

Sequences:

>Translated_294_residues
MKDLSQTQLGIVYALSAYLLWGINPIFFKYLGFIPVYEILAHRVIWSVVFIAIVITFLGGWGKALSILKTPKNILFLTCT
SLLISVNWSVFIWAINNGRMLEASLGYFINPLINVVLGLVFLNEALSRVKWIAVSLALIGVLIQVVQVGSLPWVSLVLPI
SFGFYGLLRKKIKIEALIGLFFETLLVLPVALYYLFFVANGENVNMLNNNWSLNLWLMFTGIATAMPLFFFAQAALRLKL
STLGFFQYLAPSMMFLMAVFIYGEVLSLARIITFIFIWAGILLFAGENKLKKWL
>Mature_294_residues
MKDLSQTQLGIVYALSAYLLWGINPIFFKYLGFIPVYEILAHRVIWSVVFIAIVITFLGGWGKALSILKTPKNILFLTCT
SLLISVNWSVFIWAINNGRMLEASLGYFINPLINVVLGLVFLNEALSRVKWIAVSLALIGVLIQVVQVGSLPWVSLVLPI
SFGFYGLLRKKIKIEALIGLFFETLLVLPVALYYLFFVANGENVNMLNNNWSLNLWLMFTGIATAMPLFFFAQAALRLKL
STLGFFQYLAPSMMFLMAVFIYGEVLSLARIITFIFIWAGILLFAGENKLKKWL

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=282, Percent_Identity=49.645390070922, Blast_Score=285, Evalue=3e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33173; Mature: 33173

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDLSQTQLGIVYALSAYLLWGINPIFFKYLGFIPVYEILAHRVIWSVVFIAIVITFLGG
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
WGKALSILKTPKNILFLTCTSLLISVNWSVFIWAINNGRMLEASLGYFINPLINVVLGLV
HHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEEECCCEEEHHHHHHHHHHHHHHHHHHH
FLNEALSRVKWIAVSLALIGVLIQVVQVGSLPWVSLVLPISFGFYGLLRKKIKIEALIGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFETLLVLPVALYYLFFVANGENVNMLNNNWSLNLWLMFTGIATAMPLFFFAQAALRLKL
HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
STLGFFQYLAPSMMFLMAVFIYGEVLSLARIITFIFIWAGILLFAGENKLKKWL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCC
>Mature Secondary Structure
MKDLSQTQLGIVYALSAYLLWGINPIFFKYLGFIPVYEILAHRVIWSVVFIAIVITFLGG
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
WGKALSILKTPKNILFLTCTSLLISVNWSVFIWAINNGRMLEASLGYFINPLINVVLGLV
HHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEEECCCEEEHHHHHHHHHHHHHHHHHHH
FLNEALSRVKWIAVSLALIGVLIQVVQVGSLPWVSLVLPISFGFYGLLRKKIKIEALIGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFETLLVLPVALYYLFFVANGENVNMLNNNWSLNLWLMFTGIATAMPLFFFAQAALRLKL
HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
STLGFFQYLAPSMMFLMAVFIYGEVLSLARIITFIFIWAGILLFAGENKLKKWL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]