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The map label for this gene is intD [H]

Identifier: 119944179

GI number: 119944179

Start: 507325

End: 508338

Strand: Direct

Name: intD [H]

Synonym: Ping_0399

Alternate gene names: 119944179

Gene position: 507325-508338 (Clockwise)

Preceding gene: 119944177

Following gene: 119944180

Centisome position: 11.13

GC content: 39.25

Gene sequence:

>1014_bases
ATGGCAACTCTTCAAGTCCGTAAGGGCAAAAAAAGCATCACCTATCGTGTTGAATTTATGCGAGACGGTAAGCGCATATC
CAAATCATTTAAACTTAAAAAAGAGGCTCAAACATTCATGGCATTATTGCTGGTGGATAATGATCTCGCTAATAGTTTAA
CCAATCATATTTTAACCACCTTAAACTTCTCTGATGCCGTAAAAAAACTCTTAGATCAAGATAATGGTCGAGATCCGAGT
AAACACCAGCGTTTACGTTATTGGGTTTCTGTCTTTGGCAGCCTAAAGGTTGGTAAAGTCACCCGGCAACAAGTCAAAGC
TGAGTTAAAGCGTTTATCTAATGACAAAGCTCCTGCCACATTAAATCGTTATAAAGCCGCTTTAGGCTCTTTATATCGTT
ACCTATCCGATGAGTTCGATATCGATTACAACCCGGTAAAAGGGATTCGTCAATATACAGAAAATGATGCCAGAACGCGC
TTTTTAAGTGACGAAGAGCTATCGATATTATTTGCTATGGTAAAACAATCCAAGTGGGACCAGTTGTTTCTATTGGTCTT
AATGGCTATTACAACCGGGGCTAGACGTTCTGAAATGCTTACACTAGAGTGGGATGATATTAATTTTAAAACAAAAACAG
CTCACCTTCCCAACACCAAGAATGGCGAACAGCGTATTTTAACCTTAACGGGTGATGTCATTACTGAATTAATGAAATAT
AGGTGCATAGGTGGGTATGTTTTTCCACATCCAGATGATCCAACAATATATTTCCGTAATTTTGATATCCACTGGCAAAG
TGCCTTAAGGGAAGGGGAGATCACTGATTTTAGATTTCATGACTTACGCCATACCTGTGCCAGCCTTTTAGCGATGAACG
GCGCTAGTTTGCTTGAAATAGCACAAGTGCTCGGGCATAAATCGATAACAATGACCCAAAGATACAGCCACCTTTGTATC
GAACATAAAGCAAAACTAACTGATAGAGTATTTGGAGGAATAATTAATGGGTGA

Upstream 100 bases:

>100_bases
TAGTCTAGTCAACTAGTTAGAGGTGTTAAAAAGAAAAAATGGTTTTGTTTTCCTGATACTCGGTTACGTTTTTGGCGTAA
TTTGGCGTAAAGGAAAAAAA

Downstream 100 bases:

>100_bases
TGTAAAATATTCAAAAATTAAAAATGGTAAAGATGGGTTATATGAACTTGATTTTAATGAATTAACGGAAGATTTGATCA
ACAATTTTGAAAATGATAGT

Product: phage integrase family protein

Products: NA

Alternate protein names: Prophage QSR' integrase [H]

Number of amino acids: Translated: 337; Mature: 336

Protein sequence:

>337_residues
MATLQVRKGKKSITYRVEFMRDGKRISKSFKLKKEAQTFMALLLVDNDLANSLTNHILTTLNFSDAVKKLLDQDNGRDPS
KHQRLRYWVSVFGSLKVGKVTRQQVKAELKRLSNDKAPATLNRYKAALGSLYRYLSDEFDIDYNPVKGIRQYTENDARTR
FLSDEELSILFAMVKQSKWDQLFLLVLMAITTGARRSEMLTLEWDDINFKTKTAHLPNTKNGEQRILTLTGDVITELMKY
RCIGGYVFPHPDDPTIYFRNFDIHWQSALREGEITDFRFHDLRHTCASLLAMNGASLLEIAQVLGHKSITMTQRYSHLCI
EHKAKLTDRVFGGIING

Sequences:

>Translated_337_residues
MATLQVRKGKKSITYRVEFMRDGKRISKSFKLKKEAQTFMALLLVDNDLANSLTNHILTTLNFSDAVKKLLDQDNGRDPS
KHQRLRYWVSVFGSLKVGKVTRQQVKAELKRLSNDKAPATLNRYKAALGSLYRYLSDEFDIDYNPVKGIRQYTENDARTR
FLSDEELSILFAMVKQSKWDQLFLLVLMAITTGARRSEMLTLEWDDINFKTKTAHLPNTKNGEQRILTLTGDVITELMKY
RCIGGYVFPHPDDPTIYFRNFDIHWQSALREGEITDFRFHDLRHTCASLLAMNGASLLEIAQVLGHKSITMTQRYSHLCI
EHKAKLTDRVFGGIING
>Mature_336_residues
ATLQVRKGKKSITYRVEFMRDGKRISKSFKLKKEAQTFMALLLVDNDLANSLTNHILTTLNFSDAVKKLLDQDNGRDPSK
HQRLRYWVSVFGSLKVGKVTRQQVKAELKRLSNDKAPATLNRYKAALGSLYRYLSDEFDIDYNPVKGIRQYTENDARTRF
LSDEELSILFAMVKQSKWDQLFLLVLMAITTGARRSEMLTLEWDDINFKTKTAHLPNTKNGEQRILTLTGDVITELMKYR
CIGGYVFPHPDDPTIYFRNFDIHWQSALREGEITDFRFHDLRHTCASLLAMNGASLLEIAQVLGHKSITMTQRYSHLCIE
HKAKLTDRVFGGIING

Specific function: Integrase from the cryptic lambdoic prophage DLP12. Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=376, Percent_Identity=25.2659574468085, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 38789; Mature: 38658

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATLQVRKGKKSITYRVEFMRDGKRISKSFKLKKEAQTFMALLLVDNDLANSLTNHILTT
CCCEEECCCCCCEEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
LNFSDAVKKLLDQDNGRDPSKHQRLRYWVSVFGSLKVGKVTRQQVKAELKRLSNDKAPAT
CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHH
LNRYKAALGSLYRYLSDEFDIDYNPVKGIRQYTENDARTRFLSDEELSILFAMVKQSKWD
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCCHH
QLFLLVLMAITTGARRSEMLTLEWDDINFKTKTAHLPNTKNGEQRILTLTGDVITELMKY
HHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCEEEEECHHHHHHHHHH
RCIGGYVFPHPDDPTIYFRNFDIHWQSALREGEITDFRFHDLRHTCASLLAMNGASLLEI
HHHCCEECCCCCCCEEEEEECCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHH
AQVLGHKSITMTQRYSHLCIEHKAKLTDRVFGGIING
HHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ATLQVRKGKKSITYRVEFMRDGKRISKSFKLKKEAQTFMALLLVDNDLANSLTNHILTT
CCEEECCCCCCEEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
LNFSDAVKKLLDQDNGRDPSKHQRLRYWVSVFGSLKVGKVTRQQVKAELKRLSNDKAPAT
CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHH
LNRYKAALGSLYRYLSDEFDIDYNPVKGIRQYTENDARTRFLSDEELSILFAMVKQSKWD
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCCHH
QLFLLVLMAITTGARRSEMLTLEWDDINFKTKTAHLPNTKNGEQRILTLTGDVITELMKY
HHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCEEEEECHHHHHHHHHH
RCIGGYVFPHPDDPTIYFRNFDIHWQSALREGEITDFRFHDLRHTCASLLAMNGASLLEI
HHHCCEECCCCCCCEEEEEECCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHH
AQVLGHKSITMTQRYSHLCIEHKAKLTDRVFGGIING
HHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2553674; 2183007; 9278503 [H]