Click here to switch to the map view.

The map label for this gene is rbsC [H]

Identifier: 119944127

GI number: 119944127

Start: 443561

End: 444535

Strand: Direct

Name: rbsC [H]

Synonym: Ping_0342

Alternate gene names: 119944127

Gene position: 443561-444535 (Clockwise)

Preceding gene: 119944126

Following gene: 119944128

Centisome position: 9.73

GC content: 44.31

Gene sequence:

>975_bases
ATGAACAACAAAGTGAGCAAGACACAAGCCAACAGTAAGCTGTTCAATAAAGAATGGTTTATTGAACAAAAATCACTGAT
TGCATTGATTTTACTGATTGTCGTTGTGGCATTTATGAATGAATATTTTTTTACTGTCAATAATCTGCTTAATATTCTGC
GCCAAACCTCGGTCATCGCGATTATTGCGGCGGGTATGACATTGGTCATATTAACCGCCGGTATTGATTTAAGTGTGGGG
TCTGTTCTCGCTTTATGTGGTGCCTTTGCTGCCAGTATGATCAGCTTGGAAATACCTATTGCCATTGCCGTCCCCATCTC
ATTATTGGGTGGTGCATTACTGGGTTGTGCAACGGGAGGGATAATTGCCAAAGGCAAAGTACAAGCCTTTATTGCAACCC
TGGTAATGATGACCTTACTCCGTGGGGTGACCATGGTATACACAGATGGACGGCCTATTTCGGCCGGGTATACCGATGTT
GCGGATAATTTTGCCTGGTTTGGAACGGGTTATGTATTTGGTATTCCGGTGCCAGTTTGGATAATGATTGCGGTTTTTGC
CGCCATCTGGTATCTGCTTAATCACACCCGTTTCGGCCGTTATGTTTATGCCTTAGGCGGTAATGAGTCAGCAACACGAT
TATCCGGGATAAATGTCGATCGCGTTAAGATCGGTGTTTATGCCATTTGCGGATTATTATCGGCACTTGCTGGGATTATT
ATTACATCGCGTTTATCCTCAGCACAACCGACAGCCGGAATGGGCTATGAGTTAGATGCTATTGCCGCGGTAGTGGTCGG
CGGGACAAGTTTAGCGGGTGGTAGAGGACGAATTACGGGCACCCTGATTGGGGCTCTGATAATTGGTGTTTTAAACAATG
CATTAAACCTAATGGACGTCTCATCCTATTTTCAGATGATTGTTAAAGCGCTGGTCATTCTGCTGGCTGTACTGGTCGAT
AATAAACAGAAATAA

Upstream 100 bases:

>100_bases
TGCATCAAGGTCGAATCAGCGGTGAATTTAACCACGCAGATGCTGATCAGGAAAAACTAATGGCTTGTGCTGTTGGTAAA
GTCAGCAACGAGGTAGCAGC

Downstream 100 bases:

>100_bases
AATTTTATTTTACCCCCCGCGGACGTTGTAAAACGCCGTAATATTATTAACAAAAGCAAAGGAATATAACATGAAAATAT
TTACTAAACTGATTACCGCA

Product: ribose ABC transporter permease protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MNNKVSKTQANSKLFNKEWFIEQKSLIALILLIVVVAFMNEYFFTVNNLLNILRQTSVIAIIAAGMTLVILTAGIDLSVG
SVLALCGAFAASMISLEIPIAIAVPISLLGGALLGCATGGIIAKGKVQAFIATLVMMTLLRGVTMVYTDGRPISAGYTDV
ADNFAWFGTGYVFGIPVPVWIMIAVFAAIWYLLNHTRFGRYVYALGGNESATRLSGINVDRVKIGVYAICGLLSALAGII
ITSRLSSAQPTAGMGYELDAIAAVVVGGTSLAGGRGRITGTLIGALIIGVLNNALNLMDVSSYFQMIVKALVILLAVLVD
NKQK

Sequences:

>Translated_324_residues
MNNKVSKTQANSKLFNKEWFIEQKSLIALILLIVVVAFMNEYFFTVNNLLNILRQTSVIAIIAAGMTLVILTAGIDLSVG
SVLALCGAFAASMISLEIPIAIAVPISLLGGALLGCATGGIIAKGKVQAFIATLVMMTLLRGVTMVYTDGRPISAGYTDV
ADNFAWFGTGYVFGIPVPVWIMIAVFAAIWYLLNHTRFGRYVYALGGNESATRLSGINVDRVKIGVYAICGLLSALAGII
ITSRLSSAQPTAGMGYELDAIAAVVVGGTSLAGGRGRITGTLIGALIIGVLNNALNLMDVSSYFQMIVKALVILLAVLVD
NKQK
>Mature_324_residues
MNNKVSKTQANSKLFNKEWFIEQKSLIALILLIVVVAFMNEYFFTVNNLLNILRQTSVIAIIAAGMTLVILTAGIDLSVG
SVLALCGAFAASMISLEIPIAIAVPISLLGGALLGCATGGIIAKGKVQAFIATLVMMTLLRGVTMVYTDGRPISAGYTDV
ADNFAWFGTGYVFGIPVPVWIMIAVFAAIWYLLNHTRFGRYVYALGGNESATRLSGINVDRVKIGVYAICGLLSALAGII
ITSRLSSAQPTAGMGYELDAIAAVVVGGTSLAGGRGRITGTLIGALIIGVLNNALNLMDVSSYFQMIVKALVILLAVLVD
NKQK

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=319, Percent_Identity=67.7115987460815, Blast_Score=417, Evalue=1e-118,
Organism=Escherichia coli, GI1788896, Length=308, Percent_Identity=39.6103896103896, Blast_Score=193, Evalue=1e-50,
Organism=Escherichia coli, GI1790524, Length=324, Percent_Identity=37.6543209876543, Blast_Score=190, Evalue=1e-49,
Organism=Escherichia coli, GI145693152, Length=322, Percent_Identity=37.888198757764, Blast_Score=187, Evalue=9e-49,
Organism=Escherichia coli, GI1789992, Length=370, Percent_Identity=35.6756756756757, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI87082395, Length=295, Percent_Identity=37.2881355932203, Blast_Score=144, Evalue=6e-36,
Organism=Escherichia coli, GI145693214, Length=250, Percent_Identity=38.8, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1788471, Length=329, Percent_Identity=36.1702127659575, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1787793, Length=287, Percent_Identity=29.616724738676, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1787794, Length=281, Percent_Identity=32.7402135231317, Blast_Score=108, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34173; Mature: 34173

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNKVSKTQANSKLFNKEWFIEQKSLIALILLIVVVAFMNEYFFTVNNLLNILRQTSVIA
CCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIAAGMTLVILTAGIDLSVGSVLALCGAFAASMISLEIPIAIAVPISLLGGALLGCATGG
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHCCC
IIAKGKVQAFIATLVMMTLLRGVTMVYTDGRPISAGYTDVADNFAWFGTGYVFGIPVPVW
EEECHHHHHHHHHHHHHHHHCCCEEEEECCEECCCCCHHHHCCCEEEECCEEEECCHHHH
IMIAVFAAIWYLLNHTRFGRYVYALGGNESATRLSGINVDRVKIGVYAICGLLSALAGII
HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
ITSRLSSAQPTAGMGYELDAIAAVVVGGTSLAGGRGRITGTLIGALIIGVLNNALNLMDV
HHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
SSYFQMIVKALVILLAVLVDNKQK
HHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNNKVSKTQANSKLFNKEWFIEQKSLIALILLIVVVAFMNEYFFTVNNLLNILRQTSVIA
CCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIAAGMTLVILTAGIDLSVGSVLALCGAFAASMISLEIPIAIAVPISLLGGALLGCATGG
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHCCC
IIAKGKVQAFIATLVMMTLLRGVTMVYTDGRPISAGYTDVADNFAWFGTGYVFGIPVPVW
EEECHHHHHHHHHHHHHHHHCCCEEEEECCEECCCCCHHHHCCCEEEECCEEEECCHHHH
IMIAVFAAIWYLLNHTRFGRYVYALGGNESATRLSGINVDRVKIGVYAICGLLSALAGII
HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
ITSRLSSAQPTAGMGYELDAIAAVVVGGTSLAGGRGRITGTLIGALIIGVLNNALNLMDV
HHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
SSYFQMIVKALVILLAVLVDNKQK
HHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]