Click here to switch to the map view.

The map label for this gene is yijO [C]

Identifier: 119855127

GI number: 119855127

Start: 248629

End: 249465

Strand: Direct

Name: yijO [C]

Synonym: Mkms_5740

Alternate gene names: 119855127

Gene position: 248629-249465 (Clockwise)

Preceding gene: 119855123

Following gene: 119855128

Centisome position: 82.3

GC content: 66.19

Gene sequence:

>837_bases
ATGATCGTCGATCGTGGGTGGCATCGTGCTTTAACGATCTATACCGAACGCTATCATCGTTTAGTGACGATGAATAGGTT
TGGCGGTGATGCAGCTGCCGGACCGCGTTGGGGCGGCACGGCGCTGCTGCGGCCGGGGGTGTTGGCCTTTGCCGGATCGA
TCGGTCCCACTGATGTGCATGCCCACCACGCCGTTCAGATCATCACGGTCACAACGGCTTTGACGGTGATCGATGGGCAC
GGTGGGCGACACGTCGGGGCGAAGGTGGTGATGCCTGCTGATGCGCCTCACCGGATTGAGGTCGGCGCGCAGGAGGGCAC
GGTGGTGTTTTTGGAGCCGGAGTCCGCGCCGGGACGGGCCGCACACTCCCGTGCCGTCCGCTCCGGCTGGACTCTCACCC
CAGTGCTGAGTCCTACCCGTCGACGAACGCTGGCGACCGTGGTCGACGAGCTGATAGCGCACCTGGCGCCCGCGACTGCC
GACTACTGCGCGGCGGCGCGGCATCCCGCCATCGATGACGCGTTGCGCCTGTTACCCGACTTGGTGGCGGCAGGCCCGGT
CATCGGCACGGAACTAGCTGCCCAGCTTGGTCTTTCGGCGAGCCGGTTGACCCATCTGTTCACCGAGCAGGTCGGCATTC
CCTTGAGGCGCTACGTGTTGTGGTCACGGTTGCGGGCCGCGATCACCCGGGTGCAGGGCGGTGATGACCTGACCGGCGCC
GCGCACGGGGCGGGATTCGCCGACAGTGCTCATTTGACCCGCACCACCCGCGAGATGTTCGGCCTGCCGCCCTCGGTGCT
GAGCCGGCACGTGTCCTGGGACCTAGACAGCGGGTAG

Upstream 100 bases:

>100_bases
CAGCGCCGAGGCGGCGAGTTGATCAGAGCTTTTTCTGCCCGGTTCATCAACACCGCGGACTCCTTTCGGCTCAACAGGCC
GCTCGCCATCAGCGACTTGA

Downstream 100 bases:

>100_bases
CCGAATCGTTCAAGCGCTGACACGGCGCCGGCCGCGACGATCAAAGCCATGAGCACGACTTCTCCGACATCGACGCAAAC
CACCGCGGTCCAGGCGGTGG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator AraC Family; Helix-Turn-Helix AraC Domain Protein; Transcriptional Regulator Arac Family; Transcriptional Regulator AraC Family Protein; Arac Family Transcriptional Regulator; Transcriptional Regulator; Helix-Turn-Helix Arac Domain Protein

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MIVDRGWHRALTIYTERYHRLVTMNRFGGDAAAGPRWGGTALLRPGVLAFAGSIGPTDVHAHHAVQIITVTTALTVIDGH
GGRHVGAKVVMPADAPHRIEVGAQEGTVVFLEPESAPGRAAHSRAVRSGWTLTPVLSPTRRRTLATVVDELIAHLAPATA
DYCAAARHPAIDDALRLLPDLVAAGPVIGTELAAQLGLSASRLTHLFTEQVGIPLRRYVLWSRLRAAITRVQGGDDLTGA
AHGAGFADSAHLTRTTREMFGLPPSVLSRHVSWDLDSG

Sequences:

>Translated_278_residues
MIVDRGWHRALTIYTERYHRLVTMNRFGGDAAAGPRWGGTALLRPGVLAFAGSIGPTDVHAHHAVQIITVTTALTVIDGH
GGRHVGAKVVMPADAPHRIEVGAQEGTVVFLEPESAPGRAAHSRAVRSGWTLTPVLSPTRRRTLATVVDELIAHLAPATA
DYCAAARHPAIDDALRLLPDLVAAGPVIGTELAAQLGLSASRLTHLFTEQVGIPLRRYVLWSRLRAAITRVQGGDDLTGA
AHGAGFADSAHLTRTTREMFGLPPSVLSRHVSWDLDSG
>Mature_278_residues
MIVDRGWHRALTIYTERYHRLVTMNRFGGDAAAGPRWGGTALLRPGVLAFAGSIGPTDVHAHHAVQIITVTTALTVIDGH
GGRHVGAKVVMPADAPHRIEVGAQEGTVVFLEPESAPGRAAHSRAVRSGWTLTPVLSPTRRRTLATVVDELIAHLAPATA
DYCAAARHPAIDDALRLLPDLVAAGPVIGTELAAQLGLSASRLTHLFTEQVGIPLRRYVLWSRLRAAITRVQGGDDLTGA
AHGAGFADSAHLTRTTREMFGLPPSVLSRHVSWDLDSG

Specific function: Unknown

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29574; Mature: 29574

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVDRGWHRALTIYTERYHRLVTMNRFGGDAAAGPRWGGTALLRPGVLAFAGSIGPTDVH
CCCCCCCCCEEHHHHHHHHHEEEEECCCCCCCCCCCCCCCHHHCCCHHHHCCCCCCCCCC
AHHAVQIITVTTALTVIDGHGGRHVGAKVVMPADAPHRIEVGAQEGTVVFLEPESAPGRA
HHHEEEEEEEEEEEEEEECCCCCCCCCEEEECCCCCCEEEECCCCCEEEEECCCCCCCHH
AHSRAVRSGWTLTPVLSPTRRRTLATVVDELIAHLAPATADYCAAARHPAIDDALRLLPD
HHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHH
LVAAGPVIGTELAAQLGLSASRLTHLFTEQVGIPLRRYVLWSRLRAAITRVQGGDDLTGA
HHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
AHGAGFADSAHLTRTTREMFGLPPSVLSRHVSWDLDSG
CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCC
>Mature Secondary Structure
MIVDRGWHRALTIYTERYHRLVTMNRFGGDAAAGPRWGGTALLRPGVLAFAGSIGPTDVH
CCCCCCCCCEEHHHHHHHHHEEEEECCCCCCCCCCCCCCCHHHCCCHHHHCCCCCCCCCC
AHHAVQIITVTTALTVIDGHGGRHVGAKVVMPADAPHRIEVGAQEGTVVFLEPESAPGRA
HHHEEEEEEEEEEEEEEECCCCCCCCCEEEECCCCCCEEEECCCCCEEEEECCCCCCCHH
AHSRAVRSGWTLTPVLSPTRRRTLATVVDELIAHLAPATADYCAAARHPAIDDALRLLPD
HHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHH
LVAAGPVIGTELAAQLGLSASRLTHLFTEQVGIPLRRYVLWSRLRAAITRVQGGDDLTGA
HHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
AHGAGFADSAHLTRTTREMFGLPPSVLSRHVSWDLDSG
CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA