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The map label for this gene is vapI [H]

Identifier: 119900078

GI number: 119900078

Start: 4150663

End: 4151007

Strand: Direct

Name: vapI [H]

Synonym: azo3789

Alternate gene names: 119900078

Gene position: 4150663-4151007 (Clockwise)

Preceding gene: 119900077

Following gene: 119900079

Centisome position: 94.85

GC content: 73.62

Gene sequence:

>345_bases
ATGACCGCGCCGCATCCGCCGGCCGCACCTTCCGCCACCGCGGAAGGGCGGCCGGCGCCGCTTCGGGCTGCCGCCCACGC
CCTGCCCGCCGGCACCCGCCATCCGATCCACCCCGGCCACTTCCTCGAAACCCGCTTCCTGATTCCGGCGGCGATTTCGC
AGGATGCGCTGGCACGCGCACTGGGCATCTCGCGCCGCCGGGTGAACGAACTGGTCCGCGGCCGGCGTGCGATATCGCCC
GACACCGCGGTCCGGCTGGGCCGCTTCTTCGGCACCGATCCGCGCTTCTGGACCGCGCTGCAGGCCGAGTGGGATACCTT
CGAGGCGATGCGCAGCGCCGGGTGA

Upstream 100 bases:

>100_bases
TCCATGTGTATGCCGCGATCCGCGAGGACATCATGAGCCGCCAGAGCCTGATCAGCACCATGATCAGCGGCTGGCGGATG
TTCAAGGACTGAGCCTGCGC

Downstream 100 bases:

>100_bases
AGCGCGCCGCACGAACTTCCGCCACGCCCCGCCAGTCTCCGTCACATACCGCCGCCCCTGCGGCGGTGCCGGAGAACCGC
AATGCGCACTACCGCCCTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 113

Protein sequence:

>114_residues
MTAPHPPAAPSATAEGRPAPLRAAAHALPAGTRHPIHPGHFLETRFLIPAAISQDALARALGISRRRVNELVRGRRAISP
DTAVRLGRFFGTDPRFWTALQAEWDTFEAMRSAG

Sequences:

>Translated_114_residues
MTAPHPPAAPSATAEGRPAPLRAAAHALPAGTRHPIHPGHFLETRFLIPAAISQDALARALGISRRRVNELVRGRRAISP
DTAVRLGRFFGTDPRFWTALQAEWDTFEAMRSAG
>Mature_113_residues
TAPHPPAAPSATAEGRPAPLRAAAHALPAGTRHPIHPGHFLETRFLIPAAISQDALARALGISRRRVNELVRGRRAISPD
TAVRLGRFFGTDPRFWTALQAEWDTFEAMRSAG

Specific function: Unknown

COG id: COG3093

COG function: function code R; Plasmid maintenance system antidote protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013430
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 12352; Mature: 12221

Theoretical pI: Translated: 12.20; Mature: 12.20

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAPHPPAAPSATAEGRPAPLRAAAHALPAGTRHPIHPGHFLETRFLIPAAISQDALARA
CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHCHHHHCHHHHHHH
LGISRRRVNELVRGRRAISPDTAVRLGRFFGTDPRFWTALQAEWDTFEAMRSAG
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHCC
>Mature Secondary Structure 
TAPHPPAAPSATAEGRPAPLRAAAHALPAGTRHPIHPGHFLETRFLIPAAISQDALARA
CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHCHHHHCHHHHHHH
LGISRRRVNELVRGRRAISPDTAVRLGRFFGTDPRFWTALQAEWDTFEAMRSAG
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8169216 [H]