The gene/protein map for NC_008700 is currently unavailable.
Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119776509

Identifier: 119776509

GI number: 119776509

Start: 4006194

End: 4006877

Strand: Direct

Name: 119776509

Synonym: Sama_3377

Alternate gene names: NA

Gene position: 4006194-4006877 (Clockwise)

Preceding gene: 119776508

Following gene: 119776510

Centisome position: 93.03

GC content: 59.8

Gene sequence:

>684_bases
ATGGCGTGGGGGGGATGGTCCCCGGCTTATCAAGACAGGGATAGCTGGGCCGCTTGGCAAAAATCGCTCTCTGAACCGAG
CAGCACTGTTGCGCCTGCGCTGCCTCAGGTGCCTGCCATGCAGCGTCGTCGCTTTAGCCGTTTGAGCCGCATGATGCTCG
ACGTGGCTTTCCAGTGCGAACCCGCCCCCCAGTGCCGCAGTGTGTTTGCCTCACGCCACGGCGAGCTCAATCGCACCATA
GACCTGCTCCACAGCGTCATCGTCCGCGAGCCCTTATCCCCCATGGGTTTTAGCCAGTCGGTGCATAACACCGCCAGTGG
CCTGTTTGGCATACATAGCGACAACCGTGCCGCCTCCACCTCAGTCGCTGCGGGTACAAGAAGCCTGTCTCAAGCCATGA
TCGAGGCCTATGCCCAGCTCATTGAAGACCCAAGCCCGCTGCTTTTAGTGTTTGGCGACGACCCTGTGCCGCCGGTCTAT
AACGACTACACCGAAGAATTCGAACTGCCACTGGCCTTGGGCATGGTGCTGGCGCCCGCTACCTCCGGCGCCCCAAAGCT
GACGCTCACCAACCAACAAAAGCTAGCGCCCATGAGCTACGGTCAGTTGCTGGCAAGCCTTGCCAAAGGCGAAAACTGCC
GGGGCCATCTTTCCGGTTTTGATTGGAGCCTCAATCATGACTGA

Upstream 100 bases:

>100_bases
AGCAATAACGATTCCTGCCCAATGCGGCTCAAGTGATGGATAACTTACGACGCCTGGCAACAGCGTCAGAGGCAATGCAG
TGCATTTAACTTTCAGCGTG

Downstream 100 bases:

>100_bases
GCACACCCAAAAGCTTGCGCGCCGCTCGCCCTGTCAGCACCGACTGACCGGACTGGCCTATGTGCCGCGCTGGCTGGGTG
GCATGCTGTGCTACATCTGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MAWGGWSPAYQDRDSWAAWQKSLSEPSSTVAPALPQVPAMQRRRFSRLSRMMLDVAFQCEPAPQCRSVFASRHGELNRTI
DLLHSVIVREPLSPMGFSQSVHNTASGLFGIHSDNRAASTSVAAGTRSLSQAMIEAYAQLIEDPSPLLLVFGDDPVPPVY
NDYTEEFELPLALGMVLAPATSGAPKLTLTNQQKLAPMSYGQLLASLAKGENCRGHLSGFDWSLNHD

Sequences:

>Translated_227_residues
MAWGGWSPAYQDRDSWAAWQKSLSEPSSTVAPALPQVPAMQRRRFSRLSRMMLDVAFQCEPAPQCRSVFASRHGELNRTI
DLLHSVIVREPLSPMGFSQSVHNTASGLFGIHSDNRAASTSVAAGTRSLSQAMIEAYAQLIEDPSPLLLVFGDDPVPPVY
NDYTEEFELPLALGMVLAPATSGAPKLTLTNQQKLAPMSYGQLLASLAKGENCRGHLSGFDWSLNHD
>Mature_226_residues
AWGGWSPAYQDRDSWAAWQKSLSEPSSTVAPALPQVPAMQRRRFSRLSRMMLDVAFQCEPAPQCRSVFASRHGELNRTID
LLHSVIVREPLSPMGFSQSVHNTASGLFGIHSDNRAASTSVAAGTRSLSQAMIEAYAQLIEDPSPLLLVFGDDPVPPVYN
DYTEEFELPLALGMVLAPATSGAPKLTLTNQQKLAPMSYGQLLASLAKGENCRGHLSGFDWSLNHD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24756; Mature: 24625

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAWGGWSPAYQDRDSWAAWQKSLSEPSSTVAPALPQVPAMQRRRFSRLSRMMLDVAFQCE
CCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
PAPQCRSVFASRHGELNRTIDLLHSVIVREPLSPMGFSQSVHNTASGLFGIHSDNRAAST
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEEECCCCCHHHH
SVAAGTRSLSQAMIEAYAQLIEDPSPLLLVFGDDPVPPVYNDYTEEFELPLALGMVLAPA
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHCCHHHHHHHHHCC
TSGAPKLTLTNQQKLAPMSYGQLLASLAKGENCRGHLSGFDWSLNHD
CCCCCEEEECCCHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AWGGWSPAYQDRDSWAAWQKSLSEPSSTVAPALPQVPAMQRRRFSRLSRMMLDVAFQCE
CCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
PAPQCRSVFASRHGELNRTIDLLHSVIVREPLSPMGFSQSVHNTASGLFGIHSDNRAAST
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEEECCCCCHHHH
SVAAGTRSLSQAMIEAYAQLIEDPSPLLLVFGDDPVPPVYNDYTEEFELPLALGMVLAPA
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHCCHHHHHHHHHCC
TSGAPKLTLTNQQKLAPMSYGQLLASLAKGENCRGHLSGFDWSLNHD
CCCCCEEEECCCHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA