| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776508
Identifier: 119776508
GI number: 119776508
Start: 4005077
End: 4005964
Strand: Direct
Name: 119776508
Synonym: Sama_3376
Alternate gene names: NA
Gene position: 4005077-4005964 (Clockwise)
Preceding gene: 119776507
Following gene: 119776509
Centisome position: 93.01
GC content: 54.28
Gene sequence:
>888_bases ATGCAAGTCAATCCCGAAGACAGAATCACCCCGCAGGAAGAAACCTCCCAGCGCAGCAACCGTCTGTCGGCCCTGCTGAT CCTGGCTCTGATAGCCATTGCCGCCGGCCTATGGATGTATTTTACCCGCGCACCCGAGCCCGCGCCTGTGGTGGACGTGC CGACAGAAGCCCCCCAGCCAACGCCTCTGCCCGAATCCGCGGTGACTGCAATCGAACCCGAACCCGAGCCGGAGCCTGAG GCCCAGTTCGAGCCAGAACAAGTGACCAATACACCCGAAGAAGTCATACCTGAAGTCACTGTAGATCCCATTCCTGAGCT GGCAGAAAGCGATACTTTTGCAACCCAAAAAGCTATCGCATTGGCCGGTAGTCTGCCGGTCGAACCCATCATTGCCCAGC AAGATCTGGTACGCCACTTCGTGGTCTTTATGGATAACCTGGCCGAAGGCCAGCTGGCACGCAAACAAAGCCCACTCAAG GGCCCTGAAACAAAATTCACCGTCAGCGAAATCACCGCCAAGACCTATTTAAACCCCGACAGCTACAAGCGCTACGATTT GTATGCCAATTACATTGCCAATTTAAATGAAGAGAAACTGCTGGAAACTTATGCCCAGATGACACCCATGCTGGAGCAGG CCTTCGATGAATTGGGTTACGGTAATGTCAGTTTCAAAGAACGCAGCCTCAAGGCCATCGATCAACTGCTGGCAGCACCC ATCATCGAATCACCCATAGAACTGGTCACCTTCAGCGTCAACTACAAGTTTGCCGATCCCGAGCTGGAAGCCCTGCCACC GGCACAGAAACTGATGATACGCATGGGCCCGACAAACAGTCGCAAGGTGAAAGCCGCGCTGAAGAAACTGCGGCCATTGT TGCAATAA
Upstream 100 bases:
>100_bases CTGCATTAAATATTGTTTTTGTTCAGCCTTGGACTATGGACATCGACCGGCGAACTGGGACAATGGGTGTTTCACGGGTC AGTCGCAACAAGGAACCAAG
Downstream 100 bases:
>100_bases AATCCTGTCTTTTAACAACTTGCCCCCGGATACCATGCGGTCTCCGGGGGCTTCTGTTATCAGGGTGTTTTGATATAGAA TATTCAGTCCAAAATAGACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 295; Mature: 295
Protein sequence:
>295_residues MQVNPEDRITPQEETSQRSNRLSALLILALIAIAAGLWMYFTRAPEPAPVVDVPTEAPQPTPLPESAVTAIEPEPEPEPE AQFEPEQVTNTPEEVIPEVTVDPIPELAESDTFATQKAIALAGSLPVEPIIAQQDLVRHFVVFMDNLAEGQLARKQSPLK GPETKFTVSEITAKTYLNPDSYKRYDLYANYIANLNEEKLLETYAQMTPMLEQAFDELGYGNVSFKERSLKAIDQLLAAP IIESPIELVTFSVNYKFADPELEALPPAQKLMIRMGPTNSRKVKAALKKLRPLLQ
Sequences:
>Translated_295_residues MQVNPEDRITPQEETSQRSNRLSALLILALIAIAAGLWMYFTRAPEPAPVVDVPTEAPQPTPLPESAVTAIEPEPEPEPE AQFEPEQVTNTPEEVIPEVTVDPIPELAESDTFATQKAIALAGSLPVEPIIAQQDLVRHFVVFMDNLAEGQLARKQSPLK GPETKFTVSEITAKTYLNPDSYKRYDLYANYIANLNEEKLLETYAQMTPMLEQAFDELGYGNVSFKERSLKAIDQLLAAP IIESPIELVTFSVNYKFADPELEALPPAQKLMIRMGPTNSRKVKAALKKLRPLLQ >Mature_295_residues MQVNPEDRITPQEETSQRSNRLSALLILALIAIAAGLWMYFTRAPEPAPVVDVPTEAPQPTPLPESAVTAIEPEPEPEPE AQFEPEQVTNTPEEVIPEVTVDPIPELAESDTFATQKAIALAGSLPVEPIIAQQDLVRHFVVFMDNLAEGQLARKQSPLK GPETKFTVSEITAKTYLNPDSYKRYDLYANYIANLNEEKLLETYAQMTPMLEQAFDELGYGNVSFKERSLKAIDQLLAAP IIESPIELVTFSVNYKFADPELEALPPAQKLMIRMGPTNSRKVKAALKKLRPLLQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32795; Mature: 32795
Theoretical pI: Translated: 4.29; Mature: 4.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQVNPEDRITPQEETSQRSNRLSALLILALIAIAAGLWMYFTRAPEPAPVVDVPTEAPQP CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCC TPLPESAVTAIEPEPEPEPEAQFEPEQVTNTPEEVIPEVTVDPIPELAESDTFATQKAIA CCCCCHHEECCCCCCCCCCCCCCCHHHHCCCHHHHCCCCCCCCCHHHHCCCHHHHHHHHH LAGSLPVEPIIAQQDLVRHFVVFMDNLAEGQLARKQSPLKGPETKFTVSEITAKTYLNPD HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHCCCCC SYKRYDLYANYIANLNEEKLLETYAQMTPMLEQAFDELGYGNVSFKERSLKAIDQLLAAP CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH IIESPIELVTFSVNYKFADPELEALPPAQKLMIRMGPTNSRKVKAALKKLRPLLQ HHHCCCEEEEEEEEEEECCCCCHHCCCHHHHEEEECCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure MQVNPEDRITPQEETSQRSNRLSALLILALIAIAAGLWMYFTRAPEPAPVVDVPTEAPQP CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCC TPLPESAVTAIEPEPEPEPEAQFEPEQVTNTPEEVIPEVTVDPIPELAESDTFATQKAIA CCCCCHHEECCCCCCCCCCCCCCCHHHHCCCHHHHCCCCCCCCCHHHHCCCHHHHHHHHH LAGSLPVEPIIAQQDLVRHFVVFMDNLAEGQLARKQSPLKGPETKFTVSEITAKTYLNPD HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHCCCCC SYKRYDLYANYIANLNEEKLLETYAQMTPMLEQAFDELGYGNVSFKERSLKAIDQLLAAP CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH IIESPIELVTFSVNYKFADPELEALPPAQKLMIRMGPTNSRKVKAALKKLRPLLQ HHHCCCEEEEEEEEEEECCCCCHHCCCHHHHEEEECCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA