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The map label for this gene is yraP [C]

Identifier: 119776489

GI number: 119776489

Start: 3985049

End: 3985615

Strand: Direct

Name: yraP [C]

Synonym: Sama_3357

Alternate gene names: 119776489

Gene position: 3985049-3985615 (Clockwise)

Preceding gene: 119776488

Following gene: 119776491

Centisome position: 92.54

GC content: 54.85

Gene sequence:

>567_bases
ATGATACGACTGCTGCTGACCGCACTTGCCTGTATCACACTGACCGGCTGCGCCGGTGCCGTGATGGTAGGCGCCGTCGG
TGGCGCCGTGATGGCCAATGACGAGCGCTCTATTGCGACCCAATTGGACGACACCAACGCCGACTTTGTGATTTCAAGCG
CCTTGATGAAAGATGAGGAGCTGAAGGCCAAAACCAATATCACTGCCGTGGTCATGAATGGCAACGTGCTGATGATTGGT
CAGGCGCCCAATTCCACCCTAAGGGATAAAGCGGTGAAAGTGGTCCAGGACCTCAAGCTAGGGGGCAAAATCCACAACCA
AATCCGCATCGGCAATCCCACCTCATTCACCACCCGCAGCAACGACACCTGGATAACCACCAAGGTGAAGGGGCGGATGC
TGAATGAGAAGACCCTGGATATCACCCGGGTCAAGGTGGTCACCGAGAACGGTGAAGTCTTTCTGCTGGGACTGATTCCA
CGCTCTCAGGCTGAATTGGCGGTAGAAGTGGCCCGTAACACAGCCGGTGTGCGTAAAGTCATTAAGGTTTTCGAGCTCAT
CGAATAA

Upstream 100 bases:

>100_bases
CGTCCAATGTGACAGCCCGCATCCAGGAAGTGCATCTTTTGGTGATCCACTGCCTGTGCGACAACATCGACCGCACCCTG
TTCCCTCAGGACGAAAACGC

Downstream 100 bases:

>100_bases
CCTCAACGTCACTGATAGCCTGCCACAGGTGGGCTATCAGTGGTGAAATCAGCGATGGCAGCACCACCAATGCGGCTCCC
CACCACACATGCTCCCCCGG

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MIRLLLTALACITLTGCAGAVMVGAVGGAVMANDERSIATQLDDTNADFVISSALMKDEELKAKTNITAVVMNGNVLMIG
QAPNSTLRDKAVKVVQDLKLGGKIHNQIRIGNPTSFTTRSNDTWITTKVKGRMLNEKTLDITRVKVVTENGEVFLLGLIP
RSQAELAVEVARNTAGVRKVIKVFELIE

Sequences:

>Translated_188_residues
MIRLLLTALACITLTGCAGAVMVGAVGGAVMANDERSIATQLDDTNADFVISSALMKDEELKAKTNITAVVMNGNVLMIG
QAPNSTLRDKAVKVVQDLKLGGKIHNQIRIGNPTSFTTRSNDTWITTKVKGRMLNEKTLDITRVKVVTENGEVFLLGLIP
RSQAELAVEVARNTAGVRKVIKVFELIE
>Mature_188_residues
MIRLLLTALACITLTGCAGAVMVGAVGGAVMANDERSIATQLDDTNADFVISSALMKDEELKAKTNITAVVMNGNVLMIG
QAPNSTLRDKAVKVVQDLKLGGKIHNQIRIGNPTSFTTRSNDTWITTKVKGRMLNEKTLDITRVKVVTENGEVFLLGLIP
RSQAELAVEVARNTAGVRKVIKVFELIE

Specific function: Unknown

COG id: COG2823

COG function: function code R; Predicted periplasmic or secreted lipoprotein

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 BON domains [H]

Homologues:

Organism=Escherichia coli, GI1789540, Length=157, Percent_Identity=39.4904458598726, Blast_Score=130, Evalue=4e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007055
- InterPro:   IPR014004 [H]

Pfam domain/function: PF04972 BON [H]

EC number: NA

Molecular weight: Translated: 20235; Mature: 20235

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50914 BON

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRLLLTALACITLTGCAGAVMVGAVGGAVMANDERSIATQLDDTNADFVISSALMKDEE
CHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEECCCCHHEEECCCCCCCEEEHHHHHCCHH
LKAKTNITAVVMNGNVLMIGQAPNSTLRDKAVKVVQDLKLGGKIHNQIRIGNPTSFTTRS
HHHCCCEEEEEEECCEEEEECCCCCHHHHHHHHHHHHHHCCCEEECEEEECCCCCEEECC
NDTWITTKVKGRMLNEKTLDITRVKVVTENGEVFLLGLIPRSQAELAVEVARNTAGVRKV
CCCEEEEEECCEECCCCCEEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHCHHHHHHH
IKVFELIE
HHHHHHCC
>Mature Secondary Structure
MIRLLLTALACITLTGCAGAVMVGAVGGAVMANDERSIATQLDDTNADFVISSALMKDEE
CHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEECCCCHHEEECCCCCCCEEEHHHHHCCHH
LKAKTNITAVVMNGNVLMIGQAPNSTLRDKAVKVVQDLKLGGKIHNQIRIGNPTSFTTRS
HHHCCCEEEEEEECCEEEEECCCCCHHHHHHHHHHHHHHCCCEEECEEEECCCCCEEECC
NDTWITTKVKGRMLNEKTLDITRVKVVTENGEVFLLGLIPRSQAELAVEVARNTAGVRKV
CCCEEEEEECCEECCCCCEEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHCHHHHHHH
IKVFELIE
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]