| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776461
Identifier: 119776461
GI number: 119776461
Start: 3957046
End: 3957621
Strand: Direct
Name: 119776461
Synonym: Sama_3329
Alternate gene names: NA
Gene position: 3957046-3957621 (Clockwise)
Preceding gene: 119776460
Following gene: 119776465
Centisome position: 91.89
GC content: 55.38
Gene sequence:
>576_bases ATGAAATCATTCAAGCATTTGTTGCTTGCTACTCTGATGCTGCTCGGTATTGGACAAGCCTTCGCCGCCGAGGATGACGT CAAATATCAGGATGCACTTGCCACCTTTAAGCAAGCCAGTGAAACCCACAAGTTTTTCAATAATGCCTACGGCTATGCCC TGTTCCCCACCATAGGCAAGGGGGGTATAGGTATCGGCGCCGCCTACGGCAAGGGCCGGGTTTATCGACAGGGTGCCTAT GTGGGCGACTCCAGCATGACCCAGGTTTCCATTGGCTTCCAACTGGGGGGCCAGGCCTACAGCGAGATTATTTTCTTTAA AGATGAAAAGGCCTTTCGCGACTTTACCAGCGGCAGCTTTGAGTTCAGTGGTCAGGCGTCCGCCGTGGCCATCAACGTGG GTGCCAATGCCCAGGCAGGCACCACGGGTAACTCGGCCGGTGCAGGTCAGGCAGGCGGCGCCCAAAATGCCACCGCAGCC TATATCAATGGCATGACTGTATTTACCGCAGCCAAGGGTGGATTGATGTTTGAAGCCGCCCTGGCGGGCCAGTCGTTCAC CTTCGAAGGCAAGTAG
Upstream 100 bases:
>100_bases AAGCGCCTTTCGGGGCGCTTTTTTACTGAATGCTATTCACTTTTTCTGCTCCATGCCTATGCTGGTGTCAGTCACCCCCT CACCCGAAAAGGAGAGTTCC
Downstream 100 bases:
>100_bases CCGGTAAAAATACTCAGAGTAAAAAGGCGACCCTTGGGTCGCCTTTTTCATTAATGCCTGTTGTGCATAACCGCGTCAGT TATAAGCGCGTTAGTCATGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 191; Mature: 191
Protein sequence:
>191_residues MKSFKHLLLATLMLLGIGQAFAAEDDVKYQDALATFKQASETHKFFNNAYGYALFPTIGKGGIGIGAAYGKGRVYRQGAY VGDSSMTQVSIGFQLGGQAYSEIIFFKDEKAFRDFTSGSFEFSGQASAVAINVGANAQAGTTGNSAGAGQAGGAQNATAA YINGMTVFTAAKGGLMFEAALAGQSFTFEGK
Sequences:
>Translated_191_residues MKSFKHLLLATLMLLGIGQAFAAEDDVKYQDALATFKQASETHKFFNNAYGYALFPTIGKGGIGIGAAYGKGRVYRQGAY VGDSSMTQVSIGFQLGGQAYSEIIFFKDEKAFRDFTSGSFEFSGQASAVAINVGANAQAGTTGNSAGAGQAGGAQNATAA YINGMTVFTAAKGGLMFEAALAGQSFTFEGK >Mature_191_residues MKSFKHLLLATLMLLGIGQAFAAEDDVKYQDALATFKQASETHKFFNNAYGYALFPTIGKGGIGIGAAYGKGRVYRQGAY VGDSSMTQVSIGFQLGGQAYSEIIFFKDEKAFRDFTSGSFEFSGQASAVAINVGANAQAGTTGNSAGAGQAGGAQNATAA YINGMTVFTAAKGGLMFEAALAGQSFTFEGK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19806; Mature: 19806
Theoretical pI: Translated: 8.74; Mature: 8.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSFKHLLLATLMLLGIGQAFAAEDDVKYQDALATFKQASETHKFFNNAYGYALFPTIGK CCHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC GGIGIGAAYGKGRVYRQGAYVGDSSMTQVSIGFQLGGQAYSEIIFFKDEKAFRDFTSGSF CCCEEEEECCCCEEEECCCEECCCCCEEEEEEEEECCHHHEEEEEEECCHHHHHCCCCCE EFSGQASAVAINVGANAQAGTTGNSAGAGQAGGAQNATAAYINGMTVFTAAKGGLMFEAA EECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEECCCCEEEEEE LAGQSFTFEGK CCCCEEEECCC >Mature Secondary Structure MKSFKHLLLATLMLLGIGQAFAAEDDVKYQDALATFKQASETHKFFNNAYGYALFPTIGK CCHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC GGIGIGAAYGKGRVYRQGAYVGDSSMTQVSIGFQLGGQAYSEIIFFKDEKAFRDFTSGSF CCCEEEEECCCCEEEECCCEECCCCCEEEEEEEEECCHHHEEEEEEECCHHHHHCCCCCE EFSGQASAVAINVGANAQAGTTGNSAGAGQAGGAQNATAAYINGMTVFTAAKGGLMFEAA EECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEECCCCEEEEEE LAGQSFTFEGK CCCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA