| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is pld [H]
Identifier: 119776056
GI number: 119776056
Start: 3478408
End: 3480177
Strand: Reverse
Name: pld [H]
Synonym: Sama_2924
Alternate gene names: 119776056
Gene position: 3480177-3478408 (Counterclockwise)
Preceding gene: 119776058
Following gene: 119776055
Centisome position: 80.82
GC content: 58.87
Gene sequence:
>1770_bases ATGAAACGGTCTTATTCACGTCGTGACTTCCTGGCCATGTCGGCCAAAGGCGTTGGTGCCGCAGTGGTTTCCTATGGCCT GATGGGCTGCTCCAGCAGCGATGATGATGCCCCATCTGTGCCGGTCAGCTTCGTTCACGGTGTTGCCAGTGGTGACCCGG CCCATGACGCTGTCATCATCTGGACCCGGGTGACTCCCACCGGCGATGCCGACCTGACTGTCTCCTGGCAGGTGGCCAAA GATGCCGACTTCAAAGAGCTGGTCACAGACGGCAGCACCATGACCAATAAAGACAGGGATTACACAGTCAAAGTGGATGC CATGGGCCTTGCCGCCGGCAGCAGCTATTACTTCCGCTTTATGTGCGGCGACAAAACCTCGGCTGTGGGCAAAACCCGCA CCCTGCCAGAGGGCGCCGTGTCCCAGGTGAAACTGGCGGTAATGAGCTGCGCCAACTTCCCGGCCGGTTACTTTAACGTT TACGAGCTGGCAGCGGCCCAGGGTTCACTGGATGCGGTTGTGCATCTGGGCGACTATATCTACGAATATCCCCGTGGCGG TTATGCCAGTGAAAACGCGGCGGCCATCGGCCGTGAGGTATTACCGGCCCATGAACTCCTGAGCCTGGGCGACTACCGTA CCCGTTACGCTCAGTATCGCGGTGATGCCAGTCTGCAAAAGCTCCACGCCATGGTGCCCTTTATTACAGTGTGGGATGAC CATGAAGTCTGTAACGATGCCTGGCGTGATGGCGCTGAAAACCACAATGAAGGCGAGGGCGACTTTGAGGCCCGTAAGCA GGCGGCGCTGCAGGCTTACTTTGAATGGCTGCCTATTCGCCCATGGCGCGAAGGCAACCATGAAGAAATCTTCCGAAGCT TTGCCTTTGGCGATCTGGTAGATCTGCACATGCTGGATACCCGTTTGCTTGGCCGTGATGAGCAGCTGCAGTTTGAAACC TACCTTGACCCAGCCACTGGCGCCTTCGATGGCACCAGCTTTATGGCCGATGTCACCAGCACCAGCCGCACCATGCTGGG CGCACTGCAGCTGCTGTGGCTGCAAAGCAAGTTACTGGCAAACGAAGCCAAATGGCAGGTACTGGGCCAACAGGTGTTGA TGGGCAAGATGTTGTTGCCCGCGGCCATTGCCACCCAACAGCTGTCTATTCCTCAGTTTGCCGAGCTGGCCGGTCTGGCA CAGCTCGCCGCCCGCGCTCAGGCGGGCGATCCTACCCTGACCCAAGAAGAGCTGATGTATCTGGCGGCCAACCAGCATAA GCTGACGCCGGAAGTCATTGCCCTGCTGCAACTGCCATCCATTCCCTACAACCTCGATGCCTGGGACGGTTACGCCTACG AGCGTGAGGTGATTCTGGGTACGGCCAGGTCGGTGAATGCCAATTTGGTGGTGCTGGCCGGTGATACCCACAACGCCTGG GCCAACGAGCTCAAAGACGTGAACGGCGCCGCCGTTGGCGTGGAGTTTGCGACCAGCTCAGTGTCGTCGCCGGGGCTGGA GTACTACCTGCAATTGCCGGCCGAACAAATTCCGGCCACCGAAGCGGCAGTGGTGGGGCTGGTGGACGACCTCAAGTACG CCAACCTCAAGGACAGGGGCTTTATGGTACTGACCTTCACCCAGGAAGAAGTGCGCAGCGACTGGATTTATGTCTCGTCC ATTCTGGAGAAAGATTTCACCGAGGCCACGGGCCGTGGCTACAGCGCCCGCACCCTGGCGGGCAGCCATGTGATAGAGGC TGTGGTGTAA
Upstream 100 bases:
>100_bases GCAAAACTCTACCAAGGGCGTCATGCTTGTGTAATAGTAATGTTGCAAACTAAGACTCATTGGACCTCATACCTCTCATA TAACCAAAGGAATAATAATA
Downstream 100 bases:
>100_bases TCCGCTTCCCGCTAACGGTGCTCGTCGCTAAAAAATCCACCCCAATGGGTGGATTTTTTTATGCTCAGTGGAGGAAATTC TCCGGCTTGTTATGCTTGCA
Product: alkaline phosphatase
Products: NA
Alternate protein names: PLD [H]
Number of amino acids: Translated: 589; Mature: 589
Protein sequence:
>589_residues MKRSYSRRDFLAMSAKGVGAAVVSYGLMGCSSSDDDAPSVPVSFVHGVASGDPAHDAVIIWTRVTPTGDADLTVSWQVAK DADFKELVTDGSTMTNKDRDYTVKVDAMGLAAGSSYYFRFMCGDKTSAVGKTRTLPEGAVSQVKLAVMSCANFPAGYFNV YELAAAQGSLDAVVHLGDYIYEYPRGGYASENAAAIGREVLPAHELLSLGDYRTRYAQYRGDASLQKLHAMVPFITVWDD HEVCNDAWRDGAENHNEGEGDFEARKQAALQAYFEWLPIRPWREGNHEEIFRSFAFGDLVDLHMLDTRLLGRDEQLQFET YLDPATGAFDGTSFMADVTSTSRTMLGALQLLWLQSKLLANEAKWQVLGQQVLMGKMLLPAAIATQQLSIPQFAELAGLA QLAARAQAGDPTLTQEELMYLAANQHKLTPEVIALLQLPSIPYNLDAWDGYAYEREVILGTARSVNANLVVLAGDTHNAW ANELKDVNGAAVGVEFATSSVSSPGLEYYLQLPAEQIPATEAAVVGLVDDLKYANLKDRGFMVLTFTQEEVRSDWIYVSS ILEKDFTEATGRGYSARTLAGSHVIEAVV
Sequences:
>Translated_589_residues MKRSYSRRDFLAMSAKGVGAAVVSYGLMGCSSSDDDAPSVPVSFVHGVASGDPAHDAVIIWTRVTPTGDADLTVSWQVAK DADFKELVTDGSTMTNKDRDYTVKVDAMGLAAGSSYYFRFMCGDKTSAVGKTRTLPEGAVSQVKLAVMSCANFPAGYFNV YELAAAQGSLDAVVHLGDYIYEYPRGGYASENAAAIGREVLPAHELLSLGDYRTRYAQYRGDASLQKLHAMVPFITVWDD HEVCNDAWRDGAENHNEGEGDFEARKQAALQAYFEWLPIRPWREGNHEEIFRSFAFGDLVDLHMLDTRLLGRDEQLQFET YLDPATGAFDGTSFMADVTSTSRTMLGALQLLWLQSKLLANEAKWQVLGQQVLMGKMLLPAAIATQQLSIPQFAELAGLA QLAARAQAGDPTLTQEELMYLAANQHKLTPEVIALLQLPSIPYNLDAWDGYAYEREVILGTARSVNANLVVLAGDTHNAW ANELKDVNGAAVGVEFATSSVSSPGLEYYLQLPAEQIPATEAAVVGLVDDLKYANLKDRGFMVLTFTQEEVRSDWIYVSS ILEKDFTEATGRGYSARTLAGSHVIEAVV >Mature_589_residues MKRSYSRRDFLAMSAKGVGAAVVSYGLMGCSSSDDDAPSVPVSFVHGVASGDPAHDAVIIWTRVTPTGDADLTVSWQVAK DADFKELVTDGSTMTNKDRDYTVKVDAMGLAAGSSYYFRFMCGDKTSAVGKTRTLPEGAVSQVKLAVMSCANFPAGYFNV YELAAAQGSLDAVVHLGDYIYEYPRGGYASENAAAIGREVLPAHELLSLGDYRTRYAQYRGDASLQKLHAMVPFITVWDD HEVCNDAWRDGAENHNEGEGDFEARKQAALQAYFEWLPIRPWREGNHEEIFRSFAFGDLVDLHMLDTRLLGRDEQLQFET YLDPATGAFDGTSFMADVTSTSRTMLGALQLLWLQSKLLANEAKWQVLGQQVLMGKMLLPAAIATQQLSIPQFAELAGLA QLAARAQAGDPTLTQEELMYLAANQHKLTPEVIALLQLPSIPYNLDAWDGYAYEREVILGTARSVNANLVVLAGDTHNAW ANELKDVNGAAVGVEFATSSVSSPGLEYYLQLPAEQIPATEAAVVGLVDDLKYANLKDRGFMVLTFTQEEVRSDWIYVSS ILEKDFTEATGRGYSARTLAGSHVIEAVV
Specific function: Catalyzes the hydrolysis of the ester bond between the phosphatidic acid and alcohol moieties of phospholipids. Can catalyze a transphosphatidylation reaction in the presence of high concentrations of primary alcohols. Has also phosphatase activity toward
COG id: COG3540
COG function: function code P; Phosphodiesterase/alkaline phosphatase D
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PhoD family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018946 - InterPro: IPR006311 [H]
Pfam domain/function: PF09423 PhoD [H]
EC number: =3.1.4.4 [H]
Molecular weight: Translated: 64323; Mature: 64323
Theoretical pI: Translated: 4.51; Mature: 4.51
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRSYSRRDFLAMSAKGVGAAVVSYGLMGCSSSDDDAPSVPVSFVHGVASGDPAHDAVII CCCCCCCCHHEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEE WTRVTPTGDADLTVSWQVAKDADFKELVTDGSTMTNKDRDYTVKVDAMGLAAGSSYYFRF EEEECCCCCCCEEEEEEECCCCCHHHHHCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEE MCGDKTSAVGKTRTLPEGAVSQVKLAVMSCANFPAGYFNVYELAAAQGSLDAVVHLGDYI EECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH YEYPRGGYASENAAAIGREVLPAHELLSLGDYRTRYAQYRGDASLQKLHAMVPFITVWDD HHCCCCCCCCCCHHHHHHHHCCHHHHHHHCHHHHHHHHHCCCHHHHHHHHHCCEEEEECC HEVCNDAWRDGAENHNEGEGDFEARKQAALQAYFEWLPIRPWREGNHEEIFRSFAFGDLV HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH DLHMLDTRLLGRDEQLQFETYLDPATGAFDGTSFMADVTSTSRTMLGALQLLWLQSKLLA HHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHH NEAKWQVLGQQVLMGKMLLPAAIATQQLSIPQFAELAGLAQLAARAQAGDPTLTQEELMY CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH LAANQHKLTPEVIALLQLPSIPYNLDAWDGYAYEREVILGTARSVNANLVVLAGDTHNAW HHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEECCCCCHH ANELKDVNGAAVGVEFATSSVSSPGLEYYLQLPAEQIPATEAAVVGLVDDLKYANLKDRG HHHHHCCCCCEEEEEECCCCCCCCCCEEEEECCHHHCCCCHHHHHHHHHHCCCCCCCCCC FMVLTFTQEEVRSDWIYVSSILEKDFTEATGRGYSARTLAGSHVIEAVV EEEEEEEHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCC >Mature Secondary Structure MKRSYSRRDFLAMSAKGVGAAVVSYGLMGCSSSDDDAPSVPVSFVHGVASGDPAHDAVII CCCCCCCCHHEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEE WTRVTPTGDADLTVSWQVAKDADFKELVTDGSTMTNKDRDYTVKVDAMGLAAGSSYYFRF EEEECCCCCCCEEEEEEECCCCCHHHHHCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEE MCGDKTSAVGKTRTLPEGAVSQVKLAVMSCANFPAGYFNVYELAAAQGSLDAVVHLGDYI EECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH YEYPRGGYASENAAAIGREVLPAHELLSLGDYRTRYAQYRGDASLQKLHAMVPFITVWDD HHCCCCCCCCCCHHHHHHHHCCHHHHHHHCHHHHHHHHHCCCHHHHHHHHHCCEEEEECC HEVCNDAWRDGAENHNEGEGDFEARKQAALQAYFEWLPIRPWREGNHEEIFRSFAFGDLV HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH DLHMLDTRLLGRDEQLQFETYLDPATGAFDGTSFMADVTSTSRTMLGALQLLWLQSKLLA HHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHH NEAKWQVLGQQVLMGKMLLPAAIATQQLSIPQFAELAGLAQLAARAQAGDPTLTQEELMY CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH LAANQHKLTPEVIALLQLPSIPYNLDAWDGYAYEREVILGTARSVNANLVVLAGDTHNAW HHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEECCCCCHH ANELKDVNGAAVGVEFATSSVSSPGLEYYLQLPAEQIPATEAAVVGLVDDLKYANLKDRG HHHHHCCCCCEEEEEECCCCCCCCCCEEEEECCHHHCCCCHHHHHHHHHHCCCCCCCCCC FMVLTFTQEEVRSDWIYVSSILEKDFTEATGRGYSARTLAGSHVIEAVV EEEEEEEHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12441393 [H]