| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776027
Identifier: 119776027
GI number: 119776027
Start: 3438459
End: 3440168
Strand: Reverse
Name: 119776027
Synonym: Sama_2895
Alternate gene names: NA
Gene position: 3440168-3438459 (Counterclockwise)
Preceding gene: 119776028
Following gene: 119776024
Centisome position: 79.89
GC content: 56.37
Gene sequence:
>1710_bases ATGAAAAAACTTGCGCTAGCCGTGGCCATAATCGCCGCCGGAGCGGGAGCCTATTGGTACAGCCAGCAGCAAGGCCAGGG CGCCTTGACCAATCCAGCACTCGATTACATTCCCGCTGACACCCCCATTTTTTCGGGCCAGCTGAAGCCATTTCCTATCA AGGATTATCTGATCGCTACCGCAGGCAACTCGGCCCATTTGGCACAAAGCCCGCTGTTGCAAGAAGAGATGGATGAGATT ACCGAGCCCAGCGTTCACTTCGGCATGTACCTGTATAAGGCCTATGTGGAAGGGCTGAAGGATCCCGCCGCGATGCTCAA GCGCTTCGGCCTTGGCGACCAAAGCCGTGGCTTCTTCTATACCCTGGGCGCCTTGCCCGTTGCCCGCATGGAAGTGGCCG ATACTACCGCCTTCTGGAAGCTAATGGATGAGGCCGAGCAGGCCAGCGGTTGGCAGCATACCCAGGGGACCATTGCCGGG CAGAGTTACCGCAGTTATCTGCTGTCCGATGCCAACGACGAAGAAAAAGTGGAACTGGTGATTGCCGATCGTGAGGGCAT GGTGAGTGTGACCCTCAATACCAGTTTCCAGGATCCCACGCTGCTGGAGCATGCACTGGGCGTGACCAAGGTCACCAACC CTCTGTCAGGCACCAAGTTGCTGGCCGATATCATTAAAACCCACGGTTTTATGGATGACAGTGTCAGCTACATCAACCAT CAGGAGTTGGTGCGTGCGGTCGTATCCGGTGATAACCAGCTGGGCAAACAGCTGATGAACCTCTTTGCCAAGACAGGTGA AGATCCCTTCCTGGAACTGCGCACGCCCGAGTGCCAGACCGAGCTCAACGCCATCGCGGCCAACTGGCCCCGTACCGTCG CCGGGCTGACCACAATGAAAGTGGACAGCAAGCAAGCCAGCATGGACATGAAGATGGTGCTGGAAACCCGCAATGAAGTC GTTATCAAGGCGCTGGACAAGATGCGCGGCTACATAGCCGGTTACGTGCAAAAGCCCGGTGACAGTGTAATGGCCATGGG GCTGGGGCTGGACGTGGGTCAGCTGGCGCCTTCACTGAACAAGGTTTGGAACGACTTTATGTCGCCCCGTTTGCAGTGTC AGCCACTGGCCGAATTGCAATCCGAAATGGAAGCCGCCAACCCGGCCATGCTGGGCATGGCAACCGCCATGGCAGATGGC GTCAAGGGCATAGGCGCAGCCGTGCTGGACTATGATCTGCAGATAGTGAACGACGAGCCAAGTCTGAAAAAGCTGGATGC CCTGGTCAGTCTTTCTGCCGAAGACCCGGCCTTCCTGTTTGATATGGTAAAACCCTTTGCGCCTATGCTGGGGCAAATCA ATCTCAAGTCTGGTGATGATGTCGACCTGTCTGATTATATCCCCGCTGAGTTTGGTGTTACCGCCAAGCTGGGGCTGCGT GGTCAGCATCTGGTAGTTTACAGCGGTGAAGGCGGAAAACGCATGGCAGACAGCCTCAAGGGGGAGACCCTGGCCGCCAA TGGCCTCTTTGGTATGTCGGCCGATTATGGTCGTCTGCTGTCGCCTCTGATGACCCTGATGGAAGCCTCGGGTGAGGAAA TCCCTGAAGAGCTCGAAGCCCTCAAGGACTACAAGATGCAGGTGCAAATGGGGATGGATATCAACGAGCAGGGTCCGGTA TTTAACACTGGCTTTGTGACCAAGCCCTGA
Upstream 100 bases:
>100_bases CCTTATTCATTAAACCTTTATCTGACTAAGGGATGCCGGACTTGAGGAATTGAGTCCGGGTTTGCCTGCATTTATATATT CGAACAGAACGGAGTCTTCC
Downstream 100 bases:
>100_bases CAGGAGTGCGCTCCTTTGCTCCATTAAAAACGCCGCGAAAGCGGCGTTTTTTTATGGCCGGAAAATGGCTTGGCCTGCTT TGCTGTCACTTTTCATCATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 569; Mature: 569
Protein sequence:
>569_residues MKKLALAVAIIAAGAGAYWYSQQQGQGALTNPALDYIPADTPIFSGQLKPFPIKDYLIATAGNSAHLAQSPLLQEEMDEI TEPSVHFGMYLYKAYVEGLKDPAAMLKRFGLGDQSRGFFYTLGALPVARMEVADTTAFWKLMDEAEQASGWQHTQGTIAG QSYRSYLLSDANDEEKVELVIADREGMVSVTLNTSFQDPTLLEHALGVTKVTNPLSGTKLLADIIKTHGFMDDSVSYINH QELVRAVVSGDNQLGKQLMNLFAKTGEDPFLELRTPECQTELNAIAANWPRTVAGLTTMKVDSKQASMDMKMVLETRNEV VIKALDKMRGYIAGYVQKPGDSVMAMGLGLDVGQLAPSLNKVWNDFMSPRLQCQPLAELQSEMEAANPAMLGMATAMADG VKGIGAAVLDYDLQIVNDEPSLKKLDALVSLSAEDPAFLFDMVKPFAPMLGQINLKSGDDVDLSDYIPAEFGVTAKLGLR GQHLVVYSGEGGKRMADSLKGETLAANGLFGMSADYGRLLSPLMTLMEASGEEIPEELEALKDYKMQVQMGMDINEQGPV FNTGFVTKP
Sequences:
>Translated_569_residues MKKLALAVAIIAAGAGAYWYSQQQGQGALTNPALDYIPADTPIFSGQLKPFPIKDYLIATAGNSAHLAQSPLLQEEMDEI TEPSVHFGMYLYKAYVEGLKDPAAMLKRFGLGDQSRGFFYTLGALPVARMEVADTTAFWKLMDEAEQASGWQHTQGTIAG QSYRSYLLSDANDEEKVELVIADREGMVSVTLNTSFQDPTLLEHALGVTKVTNPLSGTKLLADIIKTHGFMDDSVSYINH QELVRAVVSGDNQLGKQLMNLFAKTGEDPFLELRTPECQTELNAIAANWPRTVAGLTTMKVDSKQASMDMKMVLETRNEV VIKALDKMRGYIAGYVQKPGDSVMAMGLGLDVGQLAPSLNKVWNDFMSPRLQCQPLAELQSEMEAANPAMLGMATAMADG VKGIGAAVLDYDLQIVNDEPSLKKLDALVSLSAEDPAFLFDMVKPFAPMLGQINLKSGDDVDLSDYIPAEFGVTAKLGLR GQHLVVYSGEGGKRMADSLKGETLAANGLFGMSADYGRLLSPLMTLMEASGEEIPEELEALKDYKMQVQMGMDINEQGPV FNTGFVTKP >Mature_569_residues MKKLALAVAIIAAGAGAYWYSQQQGQGALTNPALDYIPADTPIFSGQLKPFPIKDYLIATAGNSAHLAQSPLLQEEMDEI TEPSVHFGMYLYKAYVEGLKDPAAMLKRFGLGDQSRGFFYTLGALPVARMEVADTTAFWKLMDEAEQASGWQHTQGTIAG QSYRSYLLSDANDEEKVELVIADREGMVSVTLNTSFQDPTLLEHALGVTKVTNPLSGTKLLADIIKTHGFMDDSVSYINH QELVRAVVSGDNQLGKQLMNLFAKTGEDPFLELRTPECQTELNAIAANWPRTVAGLTTMKVDSKQASMDMKMVLETRNEV VIKALDKMRGYIAGYVQKPGDSVMAMGLGLDVGQLAPSLNKVWNDFMSPRLQCQPLAELQSEMEAANPAMLGMATAMADG VKGIGAAVLDYDLQIVNDEPSLKKLDALVSLSAEDPAFLFDMVKPFAPMLGQINLKSGDDVDLSDYIPAEFGVTAKLGLR GQHLVVYSGEGGKRMADSLKGETLAANGLFGMSADYGRLLSPLMTLMEASGEEIPEELEALKDYKMQVQMGMDINEQGPV FNTGFVTKP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61762; Mature: 61762
Theoretical pI: Translated: 4.43; Mature: 4.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 5.3 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 5.3 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLALAVAIIAAGAGAYWYSQQQGQGALTNPALDYIPADTPIFSGQLKPFPIKDYLIAT CCHHHHHHHHHHHCCCHHEECCCCCCCCCCCCCHHCCCCCCCEECCCCCCCCCCCEEEEE AGNSAHLAQSPLLQEEMDEITEPSVHFGMYLYKAYVEGLKDPAAMLKRFGLGDQSRGFFY CCCCCHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCEEE TLGALPVARMEVADTTAFWKLMDEAEQASGWQHTQGTIAGQSYRSYLLSDANDEEKVELV EECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEE IADREGMVSVTLNTSFQDPTLLEHALGVTKVTNPLSGTKLLADIIKTHGFMDDSVSYINH EECCCCEEEEEEECCCCCCHHHHHHHCHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHCH QELVRAVVSGDNQLGKQLMNLFAKTGEDPFLELRTPECQTELNAIAANWPRTVAGLTTMK HHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCHHHHCCEEEE VDSKQASMDMKMVLETRNEVVIKALDKMRGYIAGYVQKPGDSVMAMGLGLDVGQLAPSLN ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHCHHHH KVWNDFMSPRLQCQPLAELQSEMEAANPAMLGMATAMADGVKGIGAAVLDYDLQIVNDEP HHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCHHHCCHHEEEEEEEEECCCC SLKKLDALVSLSAEDPAFLFDMVKPFAPMLGQINLKSGDDVDLSDYIPAEFGVTAKLGLR HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCEEECCCCCCCCHHHCCCCCCCCEEEECCC GQHLVVYSGEGGKRMADSLKGETLAANGLFGMSADYGRLLSPLMTLMEASGEEIPEELEA CCEEEEEECCCCHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH LKDYKMQVQMGMDINEQGPVFNTGFVTKP HHHHHEEEEECCCCCCCCCEEECCCCCCC >Mature Secondary Structure MKKLALAVAIIAAGAGAYWYSQQQGQGALTNPALDYIPADTPIFSGQLKPFPIKDYLIAT CCHHHHHHHHHHHCCCHHEECCCCCCCCCCCCCHHCCCCCCCEECCCCCCCCCCCEEEEE AGNSAHLAQSPLLQEEMDEITEPSVHFGMYLYKAYVEGLKDPAAMLKRFGLGDQSRGFFY CCCCCHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCEEE TLGALPVARMEVADTTAFWKLMDEAEQASGWQHTQGTIAGQSYRSYLLSDANDEEKVELV EECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEE IADREGMVSVTLNTSFQDPTLLEHALGVTKVTNPLSGTKLLADIIKTHGFMDDSVSYINH EECCCCEEEEEEECCCCCCHHHHHHHCHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHCH QELVRAVVSGDNQLGKQLMNLFAKTGEDPFLELRTPECQTELNAIAANWPRTVAGLTTMK HHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCHHHHCCEEEE VDSKQASMDMKMVLETRNEVVIKALDKMRGYIAGYVQKPGDSVMAMGLGLDVGQLAPSLN ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHCHHHH KVWNDFMSPRLQCQPLAELQSEMEAANPAMLGMATAMADGVKGIGAAVLDYDLQIVNDEP HHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCHHHCCHHEEEEEEEEECCCC SLKKLDALVSLSAEDPAFLFDMVKPFAPMLGQINLKSGDDVDLSDYIPAEFGVTAKLGLR HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCEEECCCCCCCCHHHCCCCCCCCEEEECCC GQHLVVYSGEGGKRMADSLKGETLAANGLFGMSADYGRLLSPLMTLMEASGEEIPEELEA CCEEEEEECCCCHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH LKDYKMQVQMGMDINEQGPVFNTGFVTKP HHHHHEEEEECCCCCCCCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA