Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
---|---|
Accession | NC_008700 |
Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is cysH [H]
Identifier: 119775969
GI number: 119775969
Start: 3374612
End: 3375340
Strand: Reverse
Name: cysH [H]
Synonym: Sama_2837
Alternate gene names: 119775969
Gene position: 3375340-3374612 (Counterclockwise)
Preceding gene: 119775970
Following gene: 119775965
Centisome position: 78.38
GC content: 55.69
Gene sequence:
>729_bases ATGAATTATCACGATTTACTCAGTCTGGACGCAGCCGAGCAAGCGGCCGCGCTTGAGGACATCAATCTACAGCTGGCTAA GGCCACGCCTACAGAGCGGGTTGAATTTGCGCTGCGTGAATTACCCGGCGAGCATATTTTAAGTTCCAGTTTTGGTATCC AGGCGGCAGTGATGCTGCATTTGGTGACGCATGTAAAAAGCGATGTGCCTGTGGTGCTGACCGATACCGGGTATTTGTTC CCGGAAACCTATCGATTTATCGATGAACTGACCGAGCGCCTTAAGCTTAACCTTAAGGTGTACCGCGCCCCGATGACGGC GGCCTGGCAGGAAGCCCGCTTCGGCAAGCTGTGGGAGCAGGGGCTGGACGGCCTTGAGCGCTACAACCGCATCAACAAGG TTGAGCCGATGCAGCGGGCACTGGAAGAGCTTGACGTGGGTACCTGGTTTGCTGGTCTGCGCCGCACTCAGGCGTCGACC CGCGAAGCGCTGCCTATCCTTGCCATTCACGGTAAGCGCTTTAAGTTACTGCCGATTATTGAGTGGAGCAACAAGGATGT GCATGAATACCTGACCAAGTTCGGGCTGCCCTATCACCCGCTGTGGGAGCAGGGCTATGTATCTGTGGGCGATACTCACT CCACCAAGCCGCTGGAGCTTGGCATGAGTGAAGAAGACACCCGCTTCAATGGCATGAAGCGCGAGTGCGGCCTGCACTAC GAGATTTAA
Upstream 100 bases:
>100_bases TGAGACCAGTCAGGGGGAAGCAAGGCTTCCCCCGTTTGTTTTGGCCGCTCGTTGGCCTGTGCCAAGACGTGAAGCGTCGC CAGAACCCTTGGAGATAAGC
Downstream 100 bases:
>100_bases TCCTGCAGGGCAAAGCATTGTGCGCGAGCAAAAAACGCCGGTATTTGCCGGCGTTTTTTATTTTGAATTTCAGCTGCCTT TGGCGCTTCTGATGGCGGTG
Product: phosphoadenosine phosphosulfate reductase
Products: NA
Alternate protein names: 3'-phosphoadenylylsulfate reductase; PAPS reductase, thioredoxin dependent; PAPS sulfotransferase; PAdoPS reductase [H]
Number of amino acids: Translated: 242; Mature: 242
Protein sequence:
>242_residues MNYHDLLSLDAAEQAAALEDINLQLAKATPTERVEFALRELPGEHILSSSFGIQAAVMLHLVTHVKSDVPVVLTDTGYLF PETYRFIDELTERLKLNLKVYRAPMTAAWQEARFGKLWEQGLDGLERYNRINKVEPMQRALEELDVGTWFAGLRRTQAST REALPILAIHGKRFKLLPIIEWSNKDVHEYLTKFGLPYHPLWEQGYVSVGDTHSTKPLELGMSEEDTRFNGMKRECGLHY EI
Sequences:
>Translated_242_residues MNYHDLLSLDAAEQAAALEDINLQLAKATPTERVEFALRELPGEHILSSSFGIQAAVMLHLVTHVKSDVPVVLTDTGYLF PETYRFIDELTERLKLNLKVYRAPMTAAWQEARFGKLWEQGLDGLERYNRINKVEPMQRALEELDVGTWFAGLRRTQAST REALPILAIHGKRFKLLPIIEWSNKDVHEYLTKFGLPYHPLWEQGYVSVGDTHSTKPLELGMSEEDTRFNGMKRECGLHY EI >Mature_242_residues MNYHDLLSLDAAEQAAALEDINLQLAKATPTERVEFALRELPGEHILSSSFGIQAAVMLHLVTHVKSDVPVVLTDTGYLF PETYRFIDELTERLKLNLKVYRAPMTAAWQEARFGKLWEQGLDGLERYNRINKVEPMQRALEELDVGTWFAGLRRTQAST REALPILAIHGKRFKLLPIIEWSNKDVHEYLTKFGLPYHPLWEQGYVSVGDTHSTKPLELGMSEEDTRFNGMKRECGLHY EI
Specific function: Reduction of activated sulfate into sulfite [H]
COG id: COG0175
COG function: function code EH; 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PAPS reductase family. CysH subfamily [H]
Homologues:
Organism=Escherichia coli, GI1789121, Length=239, Percent_Identity=62.7615062761506, Blast_Score=322, Evalue=1e-89, Organism=Saccharomyces cerevisiae, GI6325425, Length=254, Percent_Identity=31.1023622047244, Blast_Score=103, Evalue=2e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004511 - InterPro: IPR002500 - InterPro: IPR011800 - InterPro: IPR014729 [H]
Pfam domain/function: PF01507 PAPS_reduct [H]
EC number: =1.8.4.8 [H]
Molecular weight: Translated: 27753; Mature: 27753
Theoretical pI: Translated: 5.83; Mature: 5.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNYHDLLSLDAAEQAAALEDINLQLAKATPTERVEFALRELPGEHILSSSFGIQAAVMLH CCHHHHHCCCHHHHHHHHHHCCEEEECCCCHHHHHHHHHHCCHHHHHHCCCCHHHHHHHH LVTHVKSDVPVVLTDTGYLFPETYRFIDELTERLKLNLKVYRAPMTAAWQEARFGKLWEQ HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHH GLDGLERYNRINKVEPMQRALEELDVGTWFAGLRRTQASTREALPILAIHGKRFKLLPII HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEEE EWSNKDVHEYLTKFGLPYHPLWEQGYVSVGDTHSTKPLELGMSEEDTRFNGMKRECGLHY ECCCCCHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCEECCCCCCCHHHCCCHHHCCCCC EI CC >Mature Secondary Structure MNYHDLLSLDAAEQAAALEDINLQLAKATPTERVEFALRELPGEHILSSSFGIQAAVMLH CCHHHHHCCCHHHHHHHHHHCCEEEECCCCHHHHHHHHHHCCHHHHHHCCCCHHHHHHHH LVTHVKSDVPVVLTDTGYLFPETYRFIDELTERLKLNLKVYRAPMTAAWQEARFGKLWEQ HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHH GLDGLERYNRINKVEPMQRALEELDVGTWFAGLRRTQASTREALPILAIHGKRFKLLPII HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEEE EWSNKDVHEYLTKFGLPYHPLWEQGYVSVGDTHSTKPLELGMSEEDTRFNGMKRECGLHY ECCCCCHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCEECCCCCCCHHHCCCHHHCCCCC EI CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12368813 [H]