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The map label for this gene is ylaB [H]

Identifier: 119775894

GI number: 119775894

Start: 3302819

End: 3304855

Strand: Reverse

Name: ylaB [H]

Synonym: Sama_2762

Alternate gene names: 119775894

Gene position: 3304855-3302819 (Counterclockwise)

Preceding gene: 119775895

Following gene: 119775893

Centisome position: 76.75

GC content: 51.5

Gene sequence:

>2037_bases
ATGCAGGTAAATTTTCAGTTGTTTGATCGCAGCTTTCTGTTGGCTGTGCGCGAGTCTTTTATCGCGCTGTTACCTTTTCT
GCTTATCAATGCGCTGCTGGCGCTTTTTCCGGTACTTGCCACTGTGCTGGCACCTGAACTGTCGGTGTATGATGCTTTTC
ATTGGTTTGAAGGCATAAGTGATACGCTCGGGCGGCTTTTCCCTTTACTGGCGATGTTGTCGCTGTCGTACCACTTTGCC
AAATATCTGGATATTTCAGCGGTGGCCTCGGCCACCCTGTCCCTTTGCATCATCTTTTCGCTGCATGTGCACACCAGCGG
TGGGTTGGTGTTCAGCGATTATCTGCTTGAGGTGCTCGGCGACCCGCGCATGGTGATAACTCCCATACTGGCCGCCTACA
TCATGCGCCACTTTTTAAAATTCCCCCAGTTGCATATGGTGAGAAGTGCCGAAATCAGCGCCTATTTGAGTCAGCACCTG
AACCTGATTATTCCCATGGTGCTGACTTATACGTTGGTGGTTCTAATCCTCAAGGCCATGAGTCTGCTGTTGGTGCTGGG
GATTTCTCCCATGGTGGATGCGGTGGGCGAATTCGGCCCGATGGGACAGTTAGTTTTCCGGGTGCTGTTGACACACATGC
TCTGGTGTTTTGGGGTACATGGCGATAATGCCTTTTTGCTGCTGATTGGCGATGACAATGGTCTGCGATATCTGGCACCC
AACCTGACCTTCAGCGAGTTTATGGATCTCTTTGTGCTGCTGGGTGGCAGTGGGGCCACCATCCCGCTGCTGATTGCCAT
TTTTTTGGAAAGCCGCGACGAGCAGAGCCGGCATCTGGCCAAAATTGCGGTGCCTTTCTCTGTTGTGAATATCAATGAAA
TCCTGATTTACGGCTTGCCCATAGTCTTTAACCTGCGCCTCGCTATCCCCTTTGTGTTGCTGCCCTGCCTGAATGTGCTT
ATTGCCTGGATGGCGATTTCAGCCGGTTTTTTGAGTTTTGATGGCAAACCCTTCCCCTGGGTGACGCCACTGTTTTTGAA
TGGCTGGATTGCATCGGGTGGTTTTACCGTGGTGGCGCTGCAGCTGTTTTTGGTAACGGTTGGCGTATTTATTTATCGGC
CGTTTATTCGTAAGTACAGTGCCCTTGCCGATACCAATCAATATGATCGTGAGCTTATCAAACGCACTGAATTACAAACA
GATATTGAACGTATGGCCGAGCGGCAGTATAGCCGCAATCAGTCTGAAACCCTCGCTGCCAGTCGCAATCTGGAGCGTAC
GGTTCGCGAAGTATTGAGTGGTGAGCTCCTGGTGCACTATCAGCCAAAGCTCAAGTTGCCGGGGCAGGAGGTGGTCGGTT
TCGAGGCGCTTTTGAGGCTGAAGGATGCAGACGGCAATATAAAAGGGCCTTGGTTTATTGATAATTTTCAGCGGGCCGGT
TACTCCCACGTGATAGACCGCTTTGTGATTAATACAGTGGCAGAGGATTTGAGGCGCTGGCAGGCAGCGGGCTTTTCGCC
CAAGGTCAGTATTAACCTCGATCCGAACAACTTAAACGATGTGCTTATGCTCGACAGGCTGCGCACCACCCTGGGGGAAT
TTGCCCATCAGGTTGAAGTGGAAATCCTCGAGCGGGCATTTATGAGGGATCTGCAAGGCATTAACCGCGCCATCGCTCAA
CTTCAGGCATTGGGGTTCCGATTCTTGCTGGATGACTTCGGTACGGGATTTTCCAGTCTCAGTCTGCTGACCCAGATTAC
AGTGGATGGCATCAAGCTTGACCGGAGTATCCTCGGCAAAACCGATACTGATCAGGGCCGGGTGCTTTACCGGCAAATTT
GCCAGCTGTGTAAATCGCTCGGGTTTCAGTTGGTTGCCGAGGGCGTTGAAACCCCATCGGAGGCGAGCTTTGTCGCTGAT
GCCGGTGTGGATTATGTTCAGGGCTGGTTGTATGCCAAGGCATTGCCTCAAGCCCGGGCAATGGAATATGCGCTTAATCA
TGGCAAAATAACCCCTAACGATTTGGACACCATCTGA

Upstream 100 bases:

>100_bases
CTGCTGAAGTGCTGCGAATGAGTGTTCACTGCACGGACTGTCACTGCTGCAATTTATGGGTTAAGTTTATTTAACGAGCA
GCCATATTGTACGACAGCCT

Downstream 100 bases:

>100_bases
CACTATGCAATATATCCAACAGCTGTTAATGCCTTACCAACAACACGCGCTCAGCGCCTGGGACAGATTACGCCTGGGTT
ACAGTCTCTGTGTACATGAG

Product: putative diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 678; Mature: 678

Protein sequence:

>678_residues
MQVNFQLFDRSFLLAVRESFIALLPFLLINALLALFPVLATVLAPELSVYDAFHWFEGISDTLGRLFPLLAMLSLSYHFA
KYLDISAVASATLSLCIIFSLHVHTSGGLVFSDYLLEVLGDPRMVITPILAAYIMRHFLKFPQLHMVRSAEISAYLSQHL
NLIIPMVLTYTLVVLILKAMSLLLVLGISPMVDAVGEFGPMGQLVFRVLLTHMLWCFGVHGDNAFLLLIGDDNGLRYLAP
NLTFSEFMDLFVLLGGSGATIPLLIAIFLESRDEQSRHLAKIAVPFSVVNINEILIYGLPIVFNLRLAIPFVLLPCLNVL
IAWMAISAGFLSFDGKPFPWVTPLFLNGWIASGGFTVVALQLFLVTVGVFIYRPFIRKYSALADTNQYDRELIKRTELQT
DIERMAERQYSRNQSETLAASRNLERTVREVLSGELLVHYQPKLKLPGQEVVGFEALLRLKDADGNIKGPWFIDNFQRAG
YSHVIDRFVINTVAEDLRRWQAAGFSPKVSINLDPNNLNDVLMLDRLRTTLGEFAHQVEVEILERAFMRDLQGINRAIAQ
LQALGFRFLLDDFGTGFSSLSLLTQITVDGIKLDRSILGKTDTDQGRVLYRQICQLCKSLGFQLVAEGVETPSEASFVAD
AGVDYVQGWLYAKALPQARAMEYALNHGKITPNDLDTI

Sequences:

>Translated_678_residues
MQVNFQLFDRSFLLAVRESFIALLPFLLINALLALFPVLATVLAPELSVYDAFHWFEGISDTLGRLFPLLAMLSLSYHFA
KYLDISAVASATLSLCIIFSLHVHTSGGLVFSDYLLEVLGDPRMVITPILAAYIMRHFLKFPQLHMVRSAEISAYLSQHL
NLIIPMVLTYTLVVLILKAMSLLLVLGISPMVDAVGEFGPMGQLVFRVLLTHMLWCFGVHGDNAFLLLIGDDNGLRYLAP
NLTFSEFMDLFVLLGGSGATIPLLIAIFLESRDEQSRHLAKIAVPFSVVNINEILIYGLPIVFNLRLAIPFVLLPCLNVL
IAWMAISAGFLSFDGKPFPWVTPLFLNGWIASGGFTVVALQLFLVTVGVFIYRPFIRKYSALADTNQYDRELIKRTELQT
DIERMAERQYSRNQSETLAASRNLERTVREVLSGELLVHYQPKLKLPGQEVVGFEALLRLKDADGNIKGPWFIDNFQRAG
YSHVIDRFVINTVAEDLRRWQAAGFSPKVSINLDPNNLNDVLMLDRLRTTLGEFAHQVEVEILERAFMRDLQGINRAIAQ
LQALGFRFLLDDFGTGFSSLSLLTQITVDGIKLDRSILGKTDTDQGRVLYRQICQLCKSLGFQLVAEGVETPSEASFVAD
AGVDYVQGWLYAKALPQARAMEYALNHGKITPNDLDTI
>Mature_678_residues
MQVNFQLFDRSFLLAVRESFIALLPFLLINALLALFPVLATVLAPELSVYDAFHWFEGISDTLGRLFPLLAMLSLSYHFA
KYLDISAVASATLSLCIIFSLHVHTSGGLVFSDYLLEVLGDPRMVITPILAAYIMRHFLKFPQLHMVRSAEISAYLSQHL
NLIIPMVLTYTLVVLILKAMSLLLVLGISPMVDAVGEFGPMGQLVFRVLLTHMLWCFGVHGDNAFLLLIGDDNGLRYLAP
NLTFSEFMDLFVLLGGSGATIPLLIAIFLESRDEQSRHLAKIAVPFSVVNINEILIYGLPIVFNLRLAIPFVLLPCLNVL
IAWMAISAGFLSFDGKPFPWVTPLFLNGWIASGGFTVVALQLFLVTVGVFIYRPFIRKYSALADTNQYDRELIKRTELQT
DIERMAERQYSRNQSETLAASRNLERTVREVLSGELLVHYQPKLKLPGQEVVGFEALLRLKDADGNIKGPWFIDNFQRAG
YSHVIDRFVINTVAEDLRRWQAAGFSPKVSINLDPNNLNDVLMLDRLRTTLGEFAHQVEVEILERAFMRDLQGINRAIAQ
LQALGFRFLLDDFGTGFSSLSLLTQITVDGIKLDRSILGKTDTDQGRVLYRQICQLCKSLGFQLVAEGVETPSEASFVAD
AGVDYVQGWLYAKALPQARAMEYALNHGKITPNDLDTI

Specific function: Unknown

COG id: COG1455

COG function: function code G; Phosphotransferase system cellobiose-specific component IIC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 EAL domain [H]

Homologues:

Organism=Escherichia coli, GI87081743, Length=237, Percent_Identity=34.1772151898734, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI1790496, Length=257, Percent_Identity=30.7392996108949, Blast_Score=129, Evalue=8e-31,
Organism=Escherichia coli, GI1787541, Length=239, Percent_Identity=31.7991631799163, Blast_Score=116, Evalue=5e-27,
Organism=Escherichia coli, GI87081921, Length=244, Percent_Identity=30.7377049180328, Blast_Score=96, Evalue=7e-21,
Organism=Escherichia coli, GI226510982, Length=230, Percent_Identity=31.304347826087, Blast_Score=95, Evalue=2e-20,
Organism=Escherichia coli, GI1788502, Length=242, Percent_Identity=29.7520661157025, Blast_Score=94, Evalue=4e-20,
Organism=Escherichia coli, GI1787055, Length=239, Percent_Identity=30.9623430962343, Blast_Score=90, Evalue=5e-19,
Organism=Escherichia coli, GI1788032, Length=219, Percent_Identity=32.8767123287671, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI87082096, Length=242, Percent_Identity=29.3388429752066, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI87081980, Length=223, Percent_Identity=30.9417040358744, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI87081845, Length=235, Percent_Identity=25.9574468085106, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1788849, Length=271, Percent_Identity=24.7232472324723, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1786507, Length=104, Percent_Identity=37.5, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787410, Length=120, Percent_Identity=33.3333333333333, Blast_Score=66, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001633 [H]

Pfam domain/function: PF00563 EAL [H]

EC number: NA

Molecular weight: Translated: 75863; Mature: 75863

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: PS51105 PTS_EIIC_TYPE_3 ; PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVNFQLFDRSFLLAVRESFIALLPFLLINALLALFPVLATVLAPELSVYDAFHWFEGIS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
DTLGRLFPLLAMLSLSYHFAKYLDISAVASATLSLCIIFSLHVHTSGGLVFSDYLLEVLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHC
DPRMVITPILAAYIMRHFLKFPQLHMVRSAEISAYLSQHLNLIIPMVLTYTLVVLILKAM
CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLLLVLGISPMVDAVGEFGPMGQLVFRVLLTHMLWCFGVHGDNAFLLLIGDDNGLRYLAP
HHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEC
NLTFSEFMDLFVLLGGSGATIPLLIAIFLESRDEQSRHLAKIAVPFSVVNINEILIYGLP
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEEHHHHHHCCCH
IVFNLRLAIPFVLLPCLNVLIAWMAISAGFLSFDGKPFPWVTPLFLNGWIASGGFTVVAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCHHHHCCCCCCCCHHHHHH
QLFLVTVGVFIYRPFIRKYSALADTNQYDRELIKRTELQTDIERMAERQYSRNQSETLAA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
SRNLERTVREVLSGELLVHYQPKLKLPGQEVVGFEALLRLKDADGNIKGPWFIDNFQRAG
HCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCHHHCC
YSHVIDRFVINTVAEDLRRWQAAGFSPKVSINLDPNNLNDVLMLDRLRTTLGEFAHQVEV
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
EILERAFMRDLQGINRAIAQLQALGFRFLLDDFGTGFSSLSLLTQITVDGIKLDRSILGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
TDTDQGRVLYRQICQLCKSLGFQLVAEGVETPSEASFVADAGVDYVQGWLYAKALPQARA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHHHHCCHHHH
MEYALNHGKITPNDLDTI
HHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MQVNFQLFDRSFLLAVRESFIALLPFLLINALLALFPVLATVLAPELSVYDAFHWFEGIS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
DTLGRLFPLLAMLSLSYHFAKYLDISAVASATLSLCIIFSLHVHTSGGLVFSDYLLEVLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHC
DPRMVITPILAAYIMRHFLKFPQLHMVRSAEISAYLSQHLNLIIPMVLTYTLVVLILKAM
CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLLLVLGISPMVDAVGEFGPMGQLVFRVLLTHMLWCFGVHGDNAFLLLIGDDNGLRYLAP
HHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEC
NLTFSEFMDLFVLLGGSGATIPLLIAIFLESRDEQSRHLAKIAVPFSVVNINEILIYGLP
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEEHHHHHHCCCH
IVFNLRLAIPFVLLPCLNVLIAWMAISAGFLSFDGKPFPWVTPLFLNGWIASGGFTVVAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCHHHHCCCCCCCCHHHHHH
QLFLVTVGVFIYRPFIRKYSALADTNQYDRELIKRTELQTDIERMAERQYSRNQSETLAA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
SRNLERTVREVLSGELLVHYQPKLKLPGQEVVGFEALLRLKDADGNIKGPWFIDNFQRAG
HCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCHHHCC
YSHVIDRFVINTVAEDLRRWQAAGFSPKVSINLDPNNLNDVLMLDRLRTTLGEFAHQVEV
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
EILERAFMRDLQGINRAIAQLQALGFRFLLDDFGTGFSSLSLLTQITVDGIKLDRSILGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
TDTDQGRVLYRQICQLCKSLGFQLVAEGVETPSEASFVADAGVDYVQGWLYAKALPQARA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHHHHCCHHHH
MEYALNHGKITPNDLDTI
HHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]