| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119775884
Identifier: 119775884
GI number: 119775884
Start: 3290523
End: 3290936
Strand: Reverse
Name: 119775884
Synonym: Sama_2752
Alternate gene names: NA
Gene position: 3290936-3290523 (Counterclockwise)
Preceding gene: 119775885
Following gene: 119775881
Centisome position: 76.42
GC content: 57.97
Gene sequence:
>414_bases ATGCAACCCATGCAAATTGGTGAGGCCCATTTCACGGCCAGCACCCTGACACTCGAATTCACCGATGGGCGACGTCATAC CCTGACCCAGGCTCAAGGGGCCTTGCTGTTGATGCTCGGCGCCGAGCGGGGGCGAGTGGTATCCCGCTCAAGCTTGCGTG GTGCCCTCAAGCAAGTGGGGGCCAATGAGCGTAAATTGGAGCGGGAAATGCGCTCGCTGGGGATGCTGATGGGGCCCGAT TGGCGTTACCTGCTCGAAGAGGTAGGGAGCGAGGGCTATTTACTGCACTCTGGGATGCGTCCCATCGCACGGCTTTTTTC GAGGCCTGTCAGAGGCTTGTCCTGGCTTCATTGTTTTGCACTTGCCTGTCTGGGCATGTTGGCAGTGTTGCTGGTACTGC TTATCTGGTCTTAA
Upstream 100 bases:
>100_bases GACGCTCACAAATTCTGCTTTTTCCTCCTCAGTGCTTAAACGGGATCACACCCCAGGGATAACGGATTCTCTATACTGAG GGCATTATTACTTTTCGGAT
Downstream 100 bases:
>100_bases CGACAAAAAAACGGATAGTGCCTGAGCACTATCCGTTGTAAGGAAAAAAAAGTCGGGGGCGTGAGGCGGACTTGACCCCC GTTATCGCATTACGGCGCGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 137; Mature: 137
Protein sequence:
>137_residues MQPMQIGEAHFTASTLTLEFTDGRRHTLTQAQGALLLMLGAERGRVVSRSSLRGALKQVGANERKLEREMRSLGMLMGPD WRYLLEEVGSEGYLLHSGMRPIARLFSRPVRGLSWLHCFALACLGMLAVLLVLLIWS
Sequences:
>Translated_137_residues MQPMQIGEAHFTASTLTLEFTDGRRHTLTQAQGALLLMLGAERGRVVSRSSLRGALKQVGANERKLEREMRSLGMLMGPD WRYLLEEVGSEGYLLHSGMRPIARLFSRPVRGLSWLHCFALACLGMLAVLLVLLIWS >Mature_137_residues MQPMQIGEAHFTASTLTLEFTDGRRHTLTQAQGALLLMLGAERGRVVSRSSLRGALKQVGANERKLEREMRSLGMLMGPD WRYLLEEVGSEGYLLHSGMRPIARLFSRPVRGLSWLHCFALACLGMLAVLLVLLIWS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15308; Mature: 15308
Theoretical pI: Translated: 10.41; Mature: 10.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 5.8 %Met (Translated Protein) 7.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 5.8 %Met (Mature Protein) 7.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQPMQIGEAHFTASTLTLEFTDGRRHTLTQAQGALLLMLGAERGRVVSRSSLRGALKQVG CCCCCCCCHHEEEEEEEEEECCCCHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCC ANERKLEREMRSLGMLMGPDWRYLLEEVGSEGYLLHSGMRPIARLFSRPVRGLSWLHCFA CCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHH LACLGMLAVLLVLLIWS HHHHHHHHHHHHHHHCC >Mature Secondary Structure MQPMQIGEAHFTASTLTLEFTDGRRHTLTQAQGALLLMLGAERGRVVSRSSLRGALKQVG CCCCCCCCHHEEEEEEEEEECCCCHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCC ANERKLEREMRSLGMLMGPDWRYLLEEVGSEGYLLHSGMRPIARLFSRPVRGLSWLHCFA CCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHH LACLGMLAVLLVLLIWS HHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA