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The map label for this gene is yebA [H]

Identifier: 119774697

GI number: 119774697

Start: 1900268

End: 1901116

Strand: Direct

Name: yebA [H]

Synonym: Sama_1560

Alternate gene names: 119774697

Gene position: 1900268-1901116 (Clockwise)

Preceding gene: 119774696

Following gene: 119774698

Centisome position: 44.13

GC content: 58.07

Gene sequence:

>849_bases
ATGATGAAGCCCTGGATTGCTGCCCTTTTACTGACACTCACCCCTGGCGCAATGGCGCAGATAGAGCTCAGTGGCAAGAT
GGAGCAGGGCTCGCTTATTCGTGGTAAGGTGCCCGCAGGCAGCAATGTCAGTTTGAACGGCAAGCCGTTGAGAGTGACCC
CAGAGGGCGATTTCGCCTTTGGAATTGAGCGTGAAGGCGAGCTTAAGCAAACGCTCGATGTCGTATATCCCGATGGACTC
ACGGAGTTCAGGCCGCTGACCTTCGCCAAACGGGAATACCGGATTTCTGAAGTAAATGGGATCAGCCAAAAGATCATGAA
GCCCGACCCCAAGGCGCAGGAGCGCGCAGCCAAAGACAGCGCCATGACCAAGGCCGCGCGGGCGACTGACTCGGATATCA
CCGCCTTTGCCAAGCCTTTTATCTGGCCTTTAACCGGCCGTATCTCGGGGGGCTATGGCAGTCAGCGGGTCTACAATGGC
GTGCCCGGTAATCCGCACTTTGGGGTGGACGTGGCGGCCAAAACCGGCACTGTGGTGGTGGCGCCCGCAGATGGTGTGGT
GACGCTGGCGGTACCGGACATGTTCTACTCAGGCGGCACCCTGATTATCGACCATGGCTATGGCGTAAGCTCGAGCTTCC
TGCATTTGTCCAAGCTTTACTTGAATGTGGGGGACAGGGTAAAGCAGGGCGACAAGATTGCCGAAGTCGGTGCCACCGGA
CGTGCCAATGGCCCGCACCTTGATTGGCGCCTCAACTGGTATCAGATGCGCCTCGATCCGGCTAGTCTGGTGCCATCCAT
GAAAGAGGTGCTGGCCAGGAAGGACCCCGACAGGGCGGGTAAACAGTAA

Upstream 100 bases:

>100_bases
AAAGTCATTGCCTACGAAGGCATTGGCAAAGGTGCCATCGCCGCGGCTGAAATAGCCTCTAGTTGAACCAGTTAACCCAG
TAAGATAAAGGATGTGCCGA

Downstream 100 bases:

>100_bases
AGGTTATCGATGCGATAAAAAAACGCCGCAAATGAGTTGCGGCGTTTTTTATTGTCACTCTAAAACCACCTCCTATGGAG
GTGGTGATCGTTCTAGTGGG

Product: M24/M37 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MMKPWIAALLLTLTPGAMAQIELSGKMEQGSLIRGKVPAGSNVSLNGKPLRVTPEGDFAFGIEREGELKQTLDVVYPDGL
TEFRPLTFAKREYRISEVNGISQKIMKPDPKAQERAAKDSAMTKAARATDSDITAFAKPFIWPLTGRISGGYGSQRVYNG
VPGNPHFGVDVAAKTGTVVVAPADGVVTLAVPDMFYSGGTLIIDHGYGVSSSFLHLSKLYLNVGDRVKQGDKIAEVGATG
RANGPHLDWRLNWYQMRLDPASLVPSMKEVLARKDPDRAGKQ

Sequences:

>Translated_282_residues
MMKPWIAALLLTLTPGAMAQIELSGKMEQGSLIRGKVPAGSNVSLNGKPLRVTPEGDFAFGIEREGELKQTLDVVYPDGL
TEFRPLTFAKREYRISEVNGISQKIMKPDPKAQERAAKDSAMTKAARATDSDITAFAKPFIWPLTGRISGGYGSQRVYNG
VPGNPHFGVDVAAKTGTVVVAPADGVVTLAVPDMFYSGGTLIIDHGYGVSSSFLHLSKLYLNVGDRVKQGDKIAEVGATG
RANGPHLDWRLNWYQMRLDPASLVPSMKEVLARKDPDRAGKQ
>Mature_282_residues
MMKPWIAALLLTLTPGAMAQIELSGKMEQGSLIRGKVPAGSNVSLNGKPLRVTPEGDFAFGIEREGELKQTLDVVYPDGL
TEFRPLTFAKREYRISEVNGISQKIMKPDPKAQERAAKDSAMTKAARATDSDITAFAKPFIWPLTGRISGGYGSQRVYNG
VPGNPHFGVDVAAKTGTVVVAPADGVVTLAVPDMFYSGGTLIIDHGYGVSSSFLHLSKLYLNVGDRVKQGDKIAEVGATG
RANGPHLDWRLNWYQMRLDPASLVPSMKEVLARKDPDRAGKQ

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=136, Percent_Identity=36.7647058823529, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 30469; Mature: 30469

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKPWIAALLLTLTPGAMAQIELSGKMEQGSLIRGKVPAGSNVSLNGKPLRVTPEGDFAF
CCCHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEECCCCCCCEEECCCEEEEECCCCEEE
GIEREGELKQTLDVVYPDGLTEFRPLTFAKREYRISEVNGISQKIMKPDPKAQERAAKDS
CCCCCCCHHHHHHEECCCCCCCCCCCEEHHHHEEHHHHCCHHHHHCCCCCHHHHHHHHHH
AMTKAARATDSDITAFAKPFIWPLTGRISGGYGSQRVYNGVPGNPHFGVDVAAKTGTVVV
HHHHHHHCCCCHHHHHHCCEEEEEECEEECCCCCCHHCCCCCCCCCCCEEEECCCCEEEE
APADGVVTLAVPDMFYSGGTLIIDHGYGVSSSFLHLSKLYLNVGDRVKQGDKIAEVGATG
ECCCCEEEEEECCCEECCCEEEEECCCCCCHHHHHHHHHHHHCCCHHHCCCCEEECCCCC
RANGPHLDWRLNWYQMRLDPASLVPSMKEVLARKDPDRAGKQ
CCCCCEEEEEEEEEEEEECHHHHHHHHHHHHHCCCCHHCCCC
>Mature Secondary Structure
MMKPWIAALLLTLTPGAMAQIELSGKMEQGSLIRGKVPAGSNVSLNGKPLRVTPEGDFAF
CCCHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEECCCCCCCEEECCCEEEEECCCCEEE
GIEREGELKQTLDVVYPDGLTEFRPLTFAKREYRISEVNGISQKIMKPDPKAQERAAKDS
CCCCCCCHHHHHHEECCCCCCCCCCCEEHHHHEEHHHHCCHHHHHCCCCCHHHHHHHHHH
AMTKAARATDSDITAFAKPFIWPLTGRISGGYGSQRVYNGVPGNPHFGVDVAAKTGTVVV
HHHHHHHCCCCHHHHHHCCEEEEEECEEECCCCCCHHCCCCCCCCCCCEEEECCCCEEEE
APADGVVTLAVPDMFYSGGTLIIDHGYGVSSSFLHLSKLYLNVGDRVKQGDKIAEVGATG
ECCCCEEEEEECCCEECCCEEEEECCCCCCHHHHHHHHHHHHCCCHHHCCCCEEECCCCC
RANGPHLDWRLNWYQMRLDPASLVPSMKEVLARKDPDRAGKQ
CCCCCEEEEEEEEEEEEECHHHHHHHHHHHHHCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]