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The map label for this gene is ndpA [C]

Identifier: 119774694

GI number: 119774694

Start: 1897148

End: 1898176

Strand: Direct

Name: ndpA [C]

Synonym: Sama_1557

Alternate gene names: 119774694

Gene position: 1897148-1898176 (Clockwise)

Preceding gene: 119774690

Following gene: 119774696

Centisome position: 44.06

GC content: 51.9

Gene sequence:

>1029_bases
ATGACGATTAAAGTAGAACAGGCAATCATCCATGAAATCGCCCAAACCCATGAGGGCCAGCTCAGCTGCCGTCTTCGCCC
ACAGCCACTGCTGAACAGTCAGGCGGTTGAGCTGATGCTGGAAGAGCTGCATCAGTCTTACACCAGCAAATCAGGCAAGG
GATTCGGCTTTTTTGGCACCCATGGCAATGACGGCGAAGCCAACCCGGCCTTTGCAAACTGTCTGAAGGACTACCTCGAT
GGTGGCCTTGGCTTCGTTGAATTCACTGGCGTTGCCAGCAAGTTGCTGCAGGATGAACTCGGCAAATATGATTTCAGCCA
GGGCGGTTTTTTACTGCTTGCATGCTACAGCCATATGGCAAGTGATTATTTGTTCGTCGCGCTGCTCAGTGCCAAGTCTT
CCATGACGGTATTGGATGACATGGAGCTGACCCAGGTGAATCATCTGGACTTGAACAACATCCAGCTTGCCGCCCGCATC
GATTTGACCGAATGGCAGGCCGATAAAGAAAGCCGTAAGTACATCTCCTTTATTCGCGGCCGTGCCGGACGCAAGGTGGC
AGATTTCTTCCTCGACTTTATGGGCTGTGTCGAGGGCATTAATCCCAAGGCACAAAACAAGAGCCTGATGATTGCGGTTG
AAGACTTTGTGGCCGGAAGCGAGCTGACCAAGGATGAGCGCCAGGCCTGTCGCGACAAGGTGTTCGAGTATTGCTCTGAG
CGTTTCGACGCAGGTGCCGAAGTAGACATTAAAGATCTCGCCGATGAACTGGCTGACTCGGGCATGGACTCGTTTTATGA
TTTTGCCACCACAGGCAACTACGATCTGGAAGAAGAGTTCCCGGTAGACAAGTCTACGTTAAGGCAGCTTAAAAAATTCT
CTGGTACCGGCGGCGGTGTTACCATCAGTTTCGATGGTCATCATCTGGGCGAGCGGGTGATTTATGACCCCATCTCAGAC
ACCCTGCTGATTAAAGGTGTACCTGCCAACCTGAAAGATCAGCTCCATCGTCGCCTAAAGGGCGAATAA

Upstream 100 bases:

>100_bases
GTGTATTTAGATTGAATAGCCATAGTCAAAAAATGTTTCACAAAGGATTGGGTTAGCGGCATATAATACCGGATTTCCAC
GGCTATCACTATCAAGGCGT

Downstream 100 bases:

>100_bases
GCGCTAAAAGGCACTAAAGAAAGGCGACCCAGATGGTCGCCTTTTTATCTTAGCCTGATCTCAGTTCGTCTTGTTTGCTG
CTTGTTGCCCGCATTTTACG

Product: nucleoid-associated protein NdpA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MTIKVEQAIIHEIAQTHEGQLSCRLRPQPLLNSQAVELMLEELHQSYTSKSGKGFGFFGTHGNDGEANPAFANCLKDYLD
GGLGFVEFTGVASKLLQDELGKYDFSQGGFLLLACYSHMASDYLFVALLSAKSSMTVLDDMELTQVNHLDLNNIQLAARI
DLTEWQADKESRKYISFIRGRAGRKVADFFLDFMGCVEGINPKAQNKSLMIAVEDFVAGSELTKDERQACRDKVFEYCSE
RFDAGAEVDIKDLADELADSGMDSFYDFATTGNYDLEEEFPVDKSTLRQLKKFSGTGGGVTISFDGHHLGERVIYDPISD
TLLIKGVPANLKDQLHRRLKGE

Sequences:

>Translated_342_residues
MTIKVEQAIIHEIAQTHEGQLSCRLRPQPLLNSQAVELMLEELHQSYTSKSGKGFGFFGTHGNDGEANPAFANCLKDYLD
GGLGFVEFTGVASKLLQDELGKYDFSQGGFLLLACYSHMASDYLFVALLSAKSSMTVLDDMELTQVNHLDLNNIQLAARI
DLTEWQADKESRKYISFIRGRAGRKVADFFLDFMGCVEGINPKAQNKSLMIAVEDFVAGSELTKDERQACRDKVFEYCSE
RFDAGAEVDIKDLADELADSGMDSFYDFATTGNYDLEEEFPVDKSTLRQLKKFSGTGGGVTISFDGHHLGERVIYDPISD
TLLIKGVPANLKDQLHRRLKGE
>Mature_341_residues
TIKVEQAIIHEIAQTHEGQLSCRLRPQPLLNSQAVELMLEELHQSYTSKSGKGFGFFGTHGNDGEANPAFANCLKDYLDG
GLGFVEFTGVASKLLQDELGKYDFSQGGFLLLACYSHMASDYLFVALLSAKSSMTVLDDMELTQVNHLDLNNIQLAARID
LTEWQADKESRKYISFIRGRAGRKVADFFLDFMGCVEGINPKAQNKSLMIAVEDFVAGSELTKDERQACRDKVFEYCSER
FDAGAEVDIKDLADELADSGMDSFYDFATTGNYDLEEEFPVDKSTLRQLKKFSGTGGGVTISFDGHHLGERVIYDPISDT
LLIKGVPANLKDQLHRRLKGE

Specific function: Unknown

COG id: COG3081

COG function: function code R; Nucleoid-associated protein

Gene ontology:

Cell location: Cytoplasm, nucleoid

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YejK family

Homologues:

Organism=Escherichia coli, GI1788513, Length=341, Percent_Identity=45.1612903225806, Blast_Score=314, Evalue=5e-87,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NDPA_SHEAM (A1S5V8)

Other databases:

- EMBL:   CP000507
- RefSeq:   YP_927434.1
- STRING:   A1S5V8
- GeneID:   4603809
- GenomeReviews:   CP000507_GR
- KEGG:   saz:Sama_1557
- NMPDR:   fig|326297.7.peg.1472
- eggNOG:   COG3081
- HOGENOM:   HBG296787
- OMA:   TESEFGH
- PhylomeDB:   A1S5V8
- ProtClustDB:   PRK00378
- GO:   GO:0005737
- GO:   GO:0009295
- HAMAP:   MF_00730
- InterPro:   IPR007358

Pfam domain/function: PF04245 NA37

EC number: NA

Molecular weight: Translated: 38005; Mature: 37874

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIKVEQAIIHEIAQTHEGQLSCRLRPQPLLNSQAVELMLEELHQSYTSKSGKGFGFFGT
CEEEHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECC
HGNDGEANPAFANCLKDYLDGGLGFVEFTGVASKLLQDELGKYDFSQGGFLLLACYSHMA
CCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
SDYLFVALLSAKSSMTVLDDMELTQVNHLDLNNIQLAARIDLTEWQADKESRKYISFIRG
HHHHHHHHHHCCCCCEECCCCHHHHCCCCCCCCEEEEEEECHHHHHCCHHHHHHHHHHHC
RAGRKVADFFLDFMGCVEGINPKAQNKSLMIAVEDFVAGSELTKDERQACRDKVFEYCSE
CCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHH
RFDAGAEVDIKDLADELADSGMDSFYDFATTGNYDLEEEFPVDKSTLRQLKKFSGTGGGV
HHCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCE
TISFDGHHLGERVIYDPISDTLLIKGVPANLKDQLHRRLKGE
EEEECCHHHCCCCEECCCCCEEEEECCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
TIKVEQAIIHEIAQTHEGQLSCRLRPQPLLNSQAVELMLEELHQSYTSKSGKGFGFFGT
EEEHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECC
HGNDGEANPAFANCLKDYLDGGLGFVEFTGVASKLLQDELGKYDFSQGGFLLLACYSHMA
CCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
SDYLFVALLSAKSSMTVLDDMELTQVNHLDLNNIQLAARIDLTEWQADKESRKYISFIRG
HHHHHHHHHHCCCCCEECCCCHHHHCCCCCCCCEEEEEEECHHHHHCCHHHHHHHHHHHC
RAGRKVADFFLDFMGCVEGINPKAQNKSLMIAVEDFVAGSELTKDERQACRDKVFEYCSE
CCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHH
RFDAGAEVDIKDLADELADSGMDSFYDFATTGNYDLEEEFPVDKSTLRQLKKFSGTGGGV
HHCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCE
TISFDGHHLGERVIYDPISDTLLIKGVPANLKDQLHRRLKGE
EEEECCHHHCCCCEECCCCCEEEEECCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA