Click here to switch to the map view.

The map label for this gene is yfcC [H]

Identifier: 119774639

GI number: 119774639

Start: 1820620

End: 1822182

Strand: Direct

Name: yfcC [H]

Synonym: Sama_1502

Alternate gene names: 119774639

Gene position: 1820620-1822182 (Clockwise)

Preceding gene: 119774637

Following gene: 119774644

Centisome position: 42.28

GC content: 54.64

Gene sequence:

>1563_bases
ATGACGACCAGACCTGATCCTTCTTCGGGTGCCACCGCCATTGCGCCATCGCCCCGGACGTGTACCTGGGTGATGCCGGA
CACCCTGGTGATCATATTTTTTGTGGCGCTTTTTGCTGCACTCATGACCTATTTGGTGCCTGTGGGGTCTTTCGATACCC
AGACAGTGACCTTTGTGCAGGACGGGGTGGAGAAAACCCGTCAGGTGGTGGATCCCGACTCGTTCCGCTATGACCTTGAT
GAACAGGGTGAGCCCAAATTGGCACCGGTTCCCGCCTTCGACCCACAGGGTAAAGGCTTCTTCAACTATATGTTTGAAGG
CCTGGTATCCGGCGATAAATGGGGCAGCGCCGTTGGCGTTATCATGTTTATGCTGGTGATTGGTGGCTCCTTTGGGGTGG
TGATGGCCACAGGCACCATAGATAACGGTATATTGCGGCTTATTCACCACACCCAGGGGCGGGAGTTTGTGTTTATTCCC
GTGCTCTTTAGCCTGTTTTCTCTCGGCGGTGCCGTGTTCGGTATGGGGGAAGAGGCCATTGCCTTTGCCATCATTATCTG
CCCGCTGATGATACGTCTTGGCTACGATGGCATCACCACTGTGATGGTGACCTATGTGGCCACCCAGGTGGGCTTCGGTG
CCAGTTGGATGAATCCTTTCAGTGTGGCCATTGCCCAGGGGATTGCCGGTATCCCCGTGCTCTCGGGTGCAGCTGTACGT
ATTCCCATGTGGATAGGTTTTACCTTGCTGGGTATTGCCTTTACCATGCTGTACGCCCGTAAAATCAAGGCCGCGCCAGC
GCTGTCATACAGCTATGCCACCGACGCCCATTTCAGGCAGGTCCAGCAGGGAAGTGACGACCAAAACCCTGCAGGCAACA
GCCGGTTTAATCTGGGTGATTATTTAGTGCTTGCGACCATAATTGCCACCATGGTGTGGGTGATTTGGGGCGTGGTAGCC
AAACATTGGTTTATTCCCGAGATTGCCAGCCAGTTTTTTACCATGGGGCTTGTCGCCGGTTTGATTGCGGTGATGTTTAA
CTTAAACGGACTCACTCTCAATGGCATGGCCAAGGCCTTCAAAGATGGTGCAGCCACCATGCTGGAGCCCTGTTTGTTGG
TGGGAAGTGCCGCCGGTATTTTGATTTTGCTTGGCAAGGGCGGCCCAACCGAGCCTTCGGTGCTCAACAGCATTCTCTCA
GCGGCAGGCGGCTTTATTGGCCATTTGCCCGATGCGCTGTCGGCCTGGTTTATGTTGCTGTTTCAATCGGTGTTCAACTT
CTTTGTGACCTCAGGTTCTGGTCAGGCAGCGCTGACTATGCCTCTGATGGCGCCGCTCGCCGATATCGTTGGCGTGAGCC
GTCAGGTGGCGGTGCTGGCGTTTCAATTGGGTGACGGTTTTACCAATGTGTTGGTGCCCACATCGGCGTCTTTGATGGCA
ACCCTGGGTGTGTGCCGGGTTGAGTTCAGCGCCTGGGTGAAATTTATCTGGCGCTTTATGTTGTTACTGTTGATTGCCGC
CAGCGTGATGGTGATTGGGGCGCATTTCCTCGGCTTCAACTGA

Upstream 100 bases:

>100_bases
GACAGTTAAAGGCTTTTGGGGTATAGTCAGCGCCTTTCGTTTCAACGCATTCACGAATATGTCATGTTTTCGTGGATGAT
TAACTGGATAAGTACAAAAG

Downstream 100 bases:

>100_bases
TGGGAAAACGCAGCTTAGCTCTGTTGACTGGCGACTGGCGACTGGCGACTGGCGACTGGCGGCGGGTGATGTAAAGCCTG
CCGTTAAATTACAGGCCTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 520; Mature: 519

Protein sequence:

>520_residues
MTTRPDPSSGATAIAPSPRTCTWVMPDTLVIIFFVALFAALMTYLVPVGSFDTQTVTFVQDGVEKTRQVVDPDSFRYDLD
EQGEPKLAPVPAFDPQGKGFFNYMFEGLVSGDKWGSAVGVIMFMLVIGGSFGVVMATGTIDNGILRLIHHTQGREFVFIP
VLFSLFSLGGAVFGMGEEAIAFAIIICPLMIRLGYDGITTVMVTYVATQVGFGASWMNPFSVAIAQGIAGIPVLSGAAVR
IPMWIGFTLLGIAFTMLYARKIKAAPALSYSYATDAHFRQVQQGSDDQNPAGNSRFNLGDYLVLATIIATMVWVIWGVVA
KHWFIPEIASQFFTMGLVAGLIAVMFNLNGLTLNGMAKAFKDGAATMLEPCLLVGSAAGILILLGKGGPTEPSVLNSILS
AAGGFIGHLPDALSAWFMLLFQSVFNFFVTSGSGQAALTMPLMAPLADIVGVSRQVAVLAFQLGDGFTNVLVPTSASLMA
TLGVCRVEFSAWVKFIWRFMLLLLIAASVMVIGAHFLGFN

Sequences:

>Translated_520_residues
MTTRPDPSSGATAIAPSPRTCTWVMPDTLVIIFFVALFAALMTYLVPVGSFDTQTVTFVQDGVEKTRQVVDPDSFRYDLD
EQGEPKLAPVPAFDPQGKGFFNYMFEGLVSGDKWGSAVGVIMFMLVIGGSFGVVMATGTIDNGILRLIHHTQGREFVFIP
VLFSLFSLGGAVFGMGEEAIAFAIIICPLMIRLGYDGITTVMVTYVATQVGFGASWMNPFSVAIAQGIAGIPVLSGAAVR
IPMWIGFTLLGIAFTMLYARKIKAAPALSYSYATDAHFRQVQQGSDDQNPAGNSRFNLGDYLVLATIIATMVWVIWGVVA
KHWFIPEIASQFFTMGLVAGLIAVMFNLNGLTLNGMAKAFKDGAATMLEPCLLVGSAAGILILLGKGGPTEPSVLNSILS
AAGGFIGHLPDALSAWFMLLFQSVFNFFVTSGSGQAALTMPLMAPLADIVGVSRQVAVLAFQLGDGFTNVLVPTSASLMA
TLGVCRVEFSAWVKFIWRFMLLLLIAASVMVIGAHFLGFN
>Mature_519_residues
TTRPDPSSGATAIAPSPRTCTWVMPDTLVIIFFVALFAALMTYLVPVGSFDTQTVTFVQDGVEKTRQVVDPDSFRYDLDE
QGEPKLAPVPAFDPQGKGFFNYMFEGLVSGDKWGSAVGVIMFMLVIGGSFGVVMATGTIDNGILRLIHHTQGREFVFIPV
LFSLFSLGGAVFGMGEEAIAFAIIICPLMIRLGYDGITTVMVTYVATQVGFGASWMNPFSVAIAQGIAGIPVLSGAAVRI
PMWIGFTLLGIAFTMLYARKIKAAPALSYSYATDAHFRQVQQGSDDQNPAGNSRFNLGDYLVLATIIATMVWVIWGVVAK
HWFIPEIASQFFTMGLVAGLIAVMFNLNGLTLNGMAKAFKDGAATMLEPCLLVGSAAGILILLGKGGPTEPSVLNSILSA
AGGFIGHLPDALSAWFMLLFQSVFNFFVTSGSGQAALTMPLMAPLADIVGVSRQVAVLAFQLGDGFTNVLVPTSASLMAT
LGVCRVEFSAWVKFIWRFMLLLLIAASVMVIGAHFLGFN

Specific function: Unknown

COG id: COG1288

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycgA [H]

Homologues:

Organism=Escherichia coli, GI87082082, Length=511, Percent_Identity=61.0567514677104, Blast_Score=615, Evalue=1e-177,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018387
- InterPro:   IPR018385 [H]

Pfam domain/function: PF03606 DcuC [H]

EC number: NA

Molecular weight: Translated: 55515; Mature: 55384

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTRPDPSSGATAIAPSPRTCTWVMPDTLVIIFFVALFAALMTYLVPVGSFDTQTVTFVQ
CCCCCCCCCCCEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
DGVEKTRQVVDPDSFRYDLDEQGEPKLAPVPAFDPQGKGFFNYMFEGLVSGDKWGSAVGV
HHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHH
IMFMLVIGGSFGVVMATGTIDNGILRLIHHTQGREFVFIPVLFSLFSLGGAVFGMGEEAI
HHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEHHHHHHHHHHCCHHCCCCHHHH
AFAIIICPLMIRLGYDGITTVMVTYVATQVGFGASWMNPFSVAIAQGIAGIPVLSGAAVR
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCEECCCEEE
IPMWIGFTLLGIAFTMLYARKIKAAPALSYSYATDAHFRQVQQGSDDQNPAGNSRFNLGD
EHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHH
YLVLATIIATMVWVIWGVVAKHWFIPEIASQFFTMGLVAGLIAVMFNLNGLTLNGMAKAF
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHH
KDGAATMLEPCLLVGSAAGILILLGKGGPTEPSVLNSILSAAGGFIGHLPDALSAWFMLL
HCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCHHHCCHHHHHHHHHHH
FQSVFNFFVTSGSGQAALTMPLMAPLADIVGVSRQVAVLAFQLGDGFTNVLVPTSASLMA
HHHHHHHHEECCCCCEEEEHHHHHHHHHHHCCCHHHHHEEEECCCCCCEEECCCCHHHHH
TLGVCRVEFSAWVKFIWRFMLLLLIAASVMVIGAHFLGFN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TTRPDPSSGATAIAPSPRTCTWVMPDTLVIIFFVALFAALMTYLVPVGSFDTQTVTFVQ
CCCCCCCCCCEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
DGVEKTRQVVDPDSFRYDLDEQGEPKLAPVPAFDPQGKGFFNYMFEGLVSGDKWGSAVGV
HHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHH
IMFMLVIGGSFGVVMATGTIDNGILRLIHHTQGREFVFIPVLFSLFSLGGAVFGMGEEAI
HHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEHHHHHHHHHHCCHHCCCCHHHH
AFAIIICPLMIRLGYDGITTVMVTYVATQVGFGASWMNPFSVAIAQGIAGIPVLSGAAVR
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCEECCCEEE
IPMWIGFTLLGIAFTMLYARKIKAAPALSYSYATDAHFRQVQQGSDDQNPAGNSRFNLGD
EHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHH
YLVLATIIATMVWVIWGVVAKHWFIPEIASQFFTMGLVAGLIAVMFNLNGLTLNGMAKAF
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHH
KDGAATMLEPCLLVGSAAGILILLGKGGPTEPSVLNSILSAAGGFIGHLPDALSAWFMLL
HCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCHHHCCHHHHHHHHHHH
FQSVFNFFVTSGSGQAALTMPLMAPLADIVGVSRQVAVLAFQLGDGFTNVLVPTSASLMA
HHHHHHHHEECCCCCEEEEHHHHHHHHHHHCCCHHHHHEEEECCCCCCEEECCCCHHHHH
TLGVCRVEFSAWVKFIWRFMLLLLIAASVMVIGAHFLGFN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 7883769 [H]