| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774519
Identifier: 119774519
GI number: 119774519
Start: 1673593
End: 1673913
Strand: Direct
Name: 119774519
Synonym: Sama_1382
Alternate gene names: NA
Gene position: 1673593-1673913 (Clockwise)
Preceding gene: 119774518
Following gene: 119774520
Centisome position: 38.87
GC content: 48.91
Gene sequence:
>321_bases TTGAACAATGCGGCTGTGAAAATTGCCGTTAAATTCTCTTTAAAAGCAACACGAAAGCCGTCTCTCGGTCAGTCGTTTGC CCTAGCAGGACCCGAGATGCCACGCCTGGAATTTGTGTTAAAAAAGCTGATGCTCTGGACAGGCTACGCGGGCGTTGTGG TGATTTACGGTGGTTTTTTGTTTCTGCTGCTGAGCGGACAGGACACCCGGGCACTCCCTTGGTATATCCTGTTATCGCCC TGGGTTTGTGTTTTTTTTGGCTTACCCTCCGCACAGCAACATGCGGTAGTCGGCTGGTTTATCAATAAATTCAGACGTTA A
Upstream 100 bases:
>100_bases AGACTTTAAGTCTCCAGCCCCGGCCAACCCTGTTGGGCAGGGGCTGTTAACTTTTGTCACCCTTTATTTTGCGCATCAAG TTGACAGATACTGACGCAGA
Downstream 100 bases:
>100_bases CCTGCCTTTTGTAAACAGAACTTCGCGCACGAAGCGTTTTGGGGAATCAAGGACATGAGGCTTGGCATTGGGCACCGCGT TGCGGCGATTTGCTTAATGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 106; Mature: 106
Protein sequence:
>106_residues MNNAAVKIAVKFSLKATRKPSLGQSFALAGPEMPRLEFVLKKLMLWTGYAGVVVIYGGFLFLLLSGQDTRALPWYILLSP WVCVFFGLPSAQQHAVVGWFINKFRR
Sequences:
>Translated_106_residues MNNAAVKIAVKFSLKATRKPSLGQSFALAGPEMPRLEFVLKKLMLWTGYAGVVVIYGGFLFLLLSGQDTRALPWYILLSP WVCVFFGLPSAQQHAVVGWFINKFRR >Mature_106_residues MNNAAVKIAVKFSLKATRKPSLGQSFALAGPEMPRLEFVLKKLMLWTGYAGVVVIYGGFLFLLLSGQDTRALPWYILLSP WVCVFFGLPSAQQHAVVGWFINKFRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 11891; Mature: 11891
Theoretical pI: Translated: 10.98; Mature: 10.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNAAVKIAVKFSLKATRKPSLGQSFALAGPEMPRLEFVLKKLMLWTGYAGVVVIYGGFL CCCCEEEEEEEEEEECCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH FLLLSGQDTRALPWYILLSPWVCVFFGLPSAQQHAVVGWFINKFRR EEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure MNNAAVKIAVKFSLKATRKPSLGQSFALAGPEMPRLEFVLKKLMLWTGYAGVVVIYGGFL CCCCEEEEEEEEEEECCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH FLLLSGQDTRALPWYILLSPWVCVFFGLPSAQQHAVVGWFINKFRR EEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA