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The map label for this gene is ompW [H]

Identifier: 119774508

GI number: 119774508

Start: 1662435

End: 1663076

Strand: Direct

Name: ompW [H]

Synonym: Sama_1371

Alternate gene names: 119774508

Gene position: 1662435-1663076 (Clockwise)

Preceding gene: 119774507

Following gene: 119774510

Centisome position: 38.61

GC content: 52.8

Gene sequence:

>642_bases
ATGAAGAAATCCTATCTGTCCGGTCTGATCGCTGCCTCCCTGCTGTCTGTTGTTTCTGCCTCTGCTTTTGCGCACCAGGC
TGGCGATATTATCGTGCGTGCCGGTGCTGTTGTTGTTGCACCCAATGAGTCCAGCCCAGTCGTGGCTGATGTGGCCGAAT
TTGGTGTGAGCAACAACACTCAGCTGGGTCTGAACTTTGGCTACATGCTGACCGACAACTGGGCCATCGAACTCCTGGCG
GCTACACCATTCACCCATGATGTGTCTCTTGGCGTGTTGGGCAAGATTGCCGAAACCAAGCACCTGCCTCCGACGCTGGT
TGCCCAGTACTACTTTGGCAACGCCAATTCCGCCTTCCGCCCTTACGTGGGTGTGGGTGTGAACTACACCAACTTCTTTG
ACACCGAATTCACCAACGATTTGGACGGTGCCCTGACCGATTTGAGCCTGTCCACTTCAGTGGGTTGGGCCGCCCAGGTA
GGTTTTGACTACAGTTTCAACAAAAACTGGATGCTGAACGCCTCTGTGTGGTACGCCGACATCAGCACAGACGTGAAATT
CAACCTGGGTGATACCCCTGTTGTGGTTGAAACTGATATCGACCCATGGGTTTACATGGTGAGTGTGGGTTATAAATTCT
AA

Upstream 100 bases:

>100_bases
TTGGATCAAGAAAGTTAACGGGTTGCTCTGGCAGGCTAGGCCTCAATTGTTACGGACGTAACAGAAAATAACAAAGCCCA
CGTGGTTAATGGAGTAAATG

Downstream 100 bases:

>100_bases
GGTTGTTTCTTCCCTGCCAAACCTTGGATAAAAAAGGCGCCCACCGGGCGCCTTTTGTCATGCTGTTTTCTCATTGAACA
TTGCTGTCAATGTTTGCCCT

Product: outer membrane protein W

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MKKSYLSGLIAASLLSVVSASAFAHQAGDIIVRAGAVVVAPNESSPVVADVAEFGVSNNTQLGLNFGYMLTDNWAIELLA
ATPFTHDVSLGVLGKIAETKHLPPTLVAQYYFGNANSAFRPYVGVGVNYTNFFDTEFTNDLDGALTDLSLSTSVGWAAQV
GFDYSFNKNWMLNASVWYADISTDVKFNLGDTPVVVETDIDPWVYMVSVGYKF

Sequences:

>Translated_213_residues
MKKSYLSGLIAASLLSVVSASAFAHQAGDIIVRAGAVVVAPNESSPVVADVAEFGVSNNTQLGLNFGYMLTDNWAIELLA
ATPFTHDVSLGVLGKIAETKHLPPTLVAQYYFGNANSAFRPYVGVGVNYTNFFDTEFTNDLDGALTDLSLSTSVGWAAQV
GFDYSFNKNWMLNASVWYADISTDVKFNLGDTPVVVETDIDPWVYMVSVGYKF
>Mature_213_residues
MKKSYLSGLIAASLLSVVSASAFAHQAGDIIVRAGAVVVAPNESSPVVADVAEFGVSNNTQLGLNFGYMLTDNWAIELLA
ATPFTHDVSLGVLGKIAETKHLPPTLVAQYYFGNANSAFRPYVGVGVNYTNFFDTEFTNDLDGALTDLSLSTSVGWAAQV
GFDYSFNKNWMLNASVWYADISTDVKFNLGDTPVVVETDIDPWVYMVSVGYKF

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=215, Percent_Identity=50.2325581395349, Blast_Score=213, Evalue=9e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 22963; Mature: 22963

Theoretical pI: Translated: 4.16; Mature: 4.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSYLSGLIAASLLSVVSASAFAHQAGDIIVRAGAVVVAPNESSPVVADVAEFGVSNNT
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEEECCCCCCEEEHHHHHCCCCCC
QLGLNFGYMLTDNWAIELLAATPFTHDVSLGVLGKIAETKHLPPTLVAQYYFGNANSAFR
EEEEEEEEEEECCEEEEEEEECCCCCCCCHHHHHHHHHCCCCCHHHEEEEEECCCCCCCC
PYVGVGVNYTNFFDTEFTNDLDGALTDLSLSTSVGWAAQVGFDYSFNKNWMLNASVWYAD
CEEECCCCCCEEECCCCCCCCCCCEEEEEECCCCCEEEEECCCEECCCCEEEEEEEEEEE
ISTDVKFNLGDTPVVVETDIDPWVYMVSVGYKF
ECCCEEEECCCCCEEEEECCCCEEEEEEECCCC
>Mature Secondary Structure
MKKSYLSGLIAASLLSVVSASAFAHQAGDIIVRAGAVVVAPNESSPVVADVAEFGVSNNT
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEEECCCCCCEEEHHHHHCCCCCC
QLGLNFGYMLTDNWAIELLAATPFTHDVSLGVLGKIAETKHLPPTLVAQYYFGNANSAFR
EEEEEEEEEEECCEEEEEEEECCCCCCCCHHHHHHHHHCCCCCHHHEEEEEECCCCCCCC
PYVGVGVNYTNFFDTEFTNDLDGALTDLSLSTSVGWAAQVGFDYSFNKNWMLNASVWYAD
CEEECCCCCCEEECCCCCCCCCCCEEEEEECCCCCEEEEECCCEECCCCEEEEEEEEEEE
ISTDVKFNLGDTPVVVETDIDPWVYMVSVGYKF
ECCCEEEECCCCCEEEEECCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2336399; 10952301 [H]