| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774441
Identifier: 119774441
GI number: 119774441
Start: 1588539
End: 1588982
Strand: Direct
Name: 119774441
Synonym: Sama_1304
Alternate gene names: NA
Gene position: 1588539-1588982 (Clockwise)
Preceding gene: 119774438
Following gene: 119774442
Centisome position: 36.89
GC content: 53.38
Gene sequence:
>444_bases ATGAACAGCATCAAGAAAACCGCCGCCGCAGTTGCACTGGGAAGCGTTGTTGTGGGCGCAGCGTTTGCCGCCGAAGCGCA GGCCAACCCTTTTGGCTTCAATGAAATGCAAGCTGGTTACCAACTGGTGGGTGACGAAGGTAAATGTGGTGAAGGCAAGT GTGGTGAAGGCAAGAAGGCCAAAGAGGGTAAGTGCGGCGAGGGTAAATGCGGTGAGGGCATGAAGGCCAAAGAAGGTAAG TGCGGTGAAGGTAAGTGTGGCGAGGGCATGAAAAAAGGCCATGAGACTGCCGAAAAAGCCAAAGAAGGTAAGTGCGGCGA AGGCAAATGTGGCGAAGGCATGAAAAAAGGCCAGGAAACTGCCGAAAAAGCCAAAGAAGGTAAGTGTGGTGAAGCCAAGG GCACTGAAAAAGCCAAAGAAGGCAAGTGCGGCGGCGCTCACTGA
Upstream 100 bases:
>100_bases AAAATTGAAATAAAAACAGGCCGCCATGGGTCTGGTAAATCAGACTGGCAGCAAAAGGCGGCCGTCATAACTCACTGAAA CACACAGAAGGAAGAAGACT
Downstream 100 bases:
>100_bases TATCAGGCTGCCACGCGGGAAATGACCCGCGTGGCATTTTATTCGCAGGCAGAGGTGAACACATGGCAGTATCCTCGCTG GCCGGACTGGGGCTAAGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 147; Mature: 147
Protein sequence:
>147_residues MNSIKKTAAAVALGSVVVGAAFAAEAQANPFGFNEMQAGYQLVGDEGKCGEGKCGEGKKAKEGKCGEGKCGEGMKAKEGK CGEGKCGEGMKKGHETAEKAKEGKCGEGKCGEGMKKGQETAEKAKEGKCGEAKGTEKAKEGKCGGAH
Sequences:
>Translated_147_residues MNSIKKTAAAVALGSVVVGAAFAAEAQANPFGFNEMQAGYQLVGDEGKCGEGKCGEGKKAKEGKCGEGKCGEGMKAKEGK CGEGKCGEGMKKGHETAEKAKEGKCGEGKCGEGMKKGQETAEKAKEGKCGEAKGTEKAKEGKCGGAH >Mature_147_residues MNSIKKTAAAVALGSVVVGAAFAAEAQANPFGFNEMQAGYQLVGDEGKCGEGKCGEGKKAKEGKCGEGKCGEGMKAKEGK CGEGKCGEGMKKGHETAEKAKEGKCGEGKCGEGMKKGQETAEKAKEGKCGEAKGTEKAKEGKCGGAH
Specific function: Unknown
COG id: COG3767
COG function: function code S; Uncharacterized low-complexity protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14799; Mature: 14799
Theoretical pI: Translated: 8.41; Mature: 8.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
6.8 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 10.2 %Cys+Met (Translated Protein) 6.8 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 10.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSIKKTAAAVALGSVVVGAAFAAEAQANPFGFNEMQAGYQLVGDEGKCGEGKCGEGKKA CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCEEECCCCCCCCCCCCCCCCC KEGKCGEGKCGEGMKAKEGKCGEGKCGEGMKKGHETAEKAKEGKCGEGKCGEGMKKGQET CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH AEKAKEGKCGEAKGTEKAKEGKCGGAH HHHHHCCCCCCCCCCCCHHCCCCCCCC >Mature Secondary Structure MNSIKKTAAAVALGSVVVGAAFAAEAQANPFGFNEMQAGYQLVGDEGKCGEGKCGEGKKA CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCEEECCCCCCCCCCCCCCCCC KEGKCGEGKCGEGMKAKEGKCGEGKCGEGMKKGHETAEKAKEGKCGEGKCGEGMKKGQET CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH AEKAKEGKCGEAKGTEKAKEGKCGGAH HHHHHCCCCCCCCCCCCHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA