| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774128
Identifier: 119774128
GI number: 119774128
Start: 1198452
End: 1200212
Strand: Reverse
Name: 119774128
Synonym: Sama_0991
Alternate gene names: NA
Gene position: 1200212-1198452 (Counterclockwise)
Preceding gene: 119774129
Following gene: 119774127
Centisome position: 27.87
GC content: 56.33
Gene sequence:
>1761_bases ATGATTTTTACCGTAGATAATCTGATAGACACCCGCTTGCCCGCCATCTCGGCAAGCCCCTGGCTCAAACGCCCTGTGTC GGCCGCGCTGCGATTCTTACTCCATGAAGAGGAATGTAACCGCATCGCCGCCGAATTCGCCTTTATGCAGGGTGTAGACT TTGCCGGTGCCGTGCTGGAAACCCTGAACTTCAGTTTTACTGTGCCCGACAGTGACCTGGATAATATTCCCGCCAAAGGC CGGGTGGTGATTTTTGCCAATCATCCCATAGGTTCTCTGGATGCGCTGGCGATGATAAAGCTCATCGGGGAAATCCGTCC CGACATCAAGGTGGTGGCCAACGAGATCCTGATGGCGATTGAACCTCTGCATCCCATCTTGTTGCCGGTGCGCAACATGG GCGGCGGCACCCCCAAGCATCATCTGGAAGCCATTCATCGTCACCTGCAAAACGACGGAGCCCTGCTTATCTTCCCCGCA GGTGAAGTGTCCCGCCTGCGCCCGAATGGTGTCAGGGATACCCTGTGGCAAAGCGGATTTCTGAAAATCGCCCTGGCCTG CGATGCGCCGCTGCTGCCCCTGTTTGCCGACGCACGCAACTCGGCAACCTTCTACGGCACATCCATGATTTACAAACCCC TTTCCACCCTGCTGCTGGTGAAAGAAATGTTCCGCCAGAAACAGCGAACCATGCCCATACGCATAGGGGAGCTCATCGCC CTTGACGCCCTCAAGGCAAAGGACTTTGATCTCAAAACCAAGGTCACCCTGCTGAAAAACCATCTGTATCGCATCGGCAA AAACCGTCCGCCCCTGTTTAAAACCCAAAGTCCCATTGCCCGCCCCGAGTGCCGCGCCGAGCTTAAAGCGGCACTTGGTG CCTGTGAGCATTTGGGGAACACCCAGGACGGAAAAACCATTTACCTTTACCAGCATCAGGGCTCCAACCCCATCATGCGT GAGATAGGCCGCTTGCGGGAGCAGGCCTTCCGGGCCGTGGGCGAAGGTACGGGCAAACGCCGGGATATAGACGCCTTCGA CAGTCACTATCTGCATCTGGTGCTGTGGGACAAAGAAGCGCTGGAAGTAGTGGGCGCTTACCGTTTTGCCAGTGCCAGTA AACTGCATCAGGAGCTTGGTGCCAACAGCCTCTATAGCCAAAGCCTGTTTGATTTCACAGACGCCTTTGCCCCCTGCTTT GCCGAGGGGTTGGAGCTGGGCCGCAGTTTCGTACAGCCCAGATACTGGGGCAAACGCAGTCTGGACTACCTCTGGTTTGG TATCGGCGCCTTCCTCGCACGCAATCCGCAATATCGCTATCTGTTCGGCCCGGTGTCCATCAGCGGCCAGTTACCCCTGG CAGCCAGAGAAATGTTGGTGGATTTTTATGGCCGCTTCTACGGCGCCAACACCCAACTGGCATCCCCGAAACAGGCATTC AGACTGTCTGATGAGCGTCGGCGCGAGCTTGACAAGCTGTATGAAGGGTTACCCATGGAGGATGCCTTTAAACGCCTGAA GCATACCCTGTCTGGCATGGGTGTTGCTGTGCCAACCCTCTACAAACAGTACACAGAGCTCTGCCATGAAGACGGCGTAT CCTTTGCCGCATTCAGCGTTGATCCCGACTTCGGTCACTGCGTCGATGGGCTGGTGACTGTGGACCTGACCCGCCTGAAA GACAAAAAACGCGAGCGATATCTGGGAGTCCACCGGCAAGATAATGCCCAGCTGGTGCTCGCAGACGGCGAAGGAGTCTG A
Upstream 100 bases:
>100_bases AGGTGGAACCATGCCGAGCACCGGCTGGAGCTGGAGCAGGAAGTGCTCCTCAACAACACAAGCAAGGCCCGCATGAAGGT TGCCTGAGACAGGACACAAG
Downstream 100 bases:
>100_bases TATACCTAGGGAAACACAGTTTTACTGGGGCAGATTATGGAACTCTCGATTGCCGACATCATGGTCACCCGGGTGGTCAC GGTTGAAATGGACGACAGGC
Product: acyltransferase family protein
Products: NA
Alternate protein names: Hemolysin; Acyltransferase Domain Protein; Acyltransferase Family Protein; Hemolysin A; Acyltransferase Domain-Containing Protein; Acyltransferase; Phosphate Acyltransferase Family Protein; Acyltransferase Protein; Phospholipid/Glycerol Acyltransferase Hemolysin; DNA Polymerase III Subunit Alpha; Sulfolipid Biosynthesis Protein SqdA; Acetyltransferase
Number of amino acids: Translated: 586; Mature: 586
Protein sequence:
>586_residues MIFTVDNLIDTRLPAISASPWLKRPVSAALRFLLHEEECNRIAAEFAFMQGVDFAGAVLETLNFSFTVPDSDLDNIPAKG RVVIFANHPIGSLDALAMIKLIGEIRPDIKVVANEILMAIEPLHPILLPVRNMGGGTPKHHLEAIHRHLQNDGALLIFPA GEVSRLRPNGVRDTLWQSGFLKIALACDAPLLPLFADARNSATFYGTSMIYKPLSTLLLVKEMFRQKQRTMPIRIGELIA LDALKAKDFDLKTKVTLLKNHLYRIGKNRPPLFKTQSPIARPECRAELKAALGACEHLGNTQDGKTIYLYQHQGSNPIMR EIGRLREQAFRAVGEGTGKRRDIDAFDSHYLHLVLWDKEALEVVGAYRFASASKLHQELGANSLYSQSLFDFTDAFAPCF AEGLELGRSFVQPRYWGKRSLDYLWFGIGAFLARNPQYRYLFGPVSISGQLPLAAREMLVDFYGRFYGANTQLASPKQAF RLSDERRRELDKLYEGLPMEDAFKRLKHTLSGMGVAVPTLYKQYTELCHEDGVSFAAFSVDPDFGHCVDGLVTVDLTRLK DKKRERYLGVHRQDNAQLVLADGEGV
Sequences:
>Translated_586_residues MIFTVDNLIDTRLPAISASPWLKRPVSAALRFLLHEEECNRIAAEFAFMQGVDFAGAVLETLNFSFTVPDSDLDNIPAKG RVVIFANHPIGSLDALAMIKLIGEIRPDIKVVANEILMAIEPLHPILLPVRNMGGGTPKHHLEAIHRHLQNDGALLIFPA GEVSRLRPNGVRDTLWQSGFLKIALACDAPLLPLFADARNSATFYGTSMIYKPLSTLLLVKEMFRQKQRTMPIRIGELIA LDALKAKDFDLKTKVTLLKNHLYRIGKNRPPLFKTQSPIARPECRAELKAALGACEHLGNTQDGKTIYLYQHQGSNPIMR EIGRLREQAFRAVGEGTGKRRDIDAFDSHYLHLVLWDKEALEVVGAYRFASASKLHQELGANSLYSQSLFDFTDAFAPCF AEGLELGRSFVQPRYWGKRSLDYLWFGIGAFLARNPQYRYLFGPVSISGQLPLAAREMLVDFYGRFYGANTQLASPKQAF RLSDERRRELDKLYEGLPMEDAFKRLKHTLSGMGVAVPTLYKQYTELCHEDGVSFAAFSVDPDFGHCVDGLVTVDLTRLK DKKRERYLGVHRQDNAQLVLADGEGV >Mature_586_residues MIFTVDNLIDTRLPAISASPWLKRPVSAALRFLLHEEECNRIAAEFAFMQGVDFAGAVLETLNFSFTVPDSDLDNIPAKG RVVIFANHPIGSLDALAMIKLIGEIRPDIKVVANEILMAIEPLHPILLPVRNMGGGTPKHHLEAIHRHLQNDGALLIFPA GEVSRLRPNGVRDTLWQSGFLKIALACDAPLLPLFADARNSATFYGTSMIYKPLSTLLLVKEMFRQKQRTMPIRIGELIA LDALKAKDFDLKTKVTLLKNHLYRIGKNRPPLFKTQSPIARPECRAELKAALGACEHLGNTQDGKTIYLYQHQGSNPIMR EIGRLREQAFRAVGEGTGKRRDIDAFDSHYLHLVLWDKEALEVVGAYRFASASKLHQELGANSLYSQSLFDFTDAFAPCF AEGLELGRSFVQPRYWGKRSLDYLWFGIGAFLARNPQYRYLFGPVSISGQLPLAAREMLVDFYGRFYGANTQLASPKQAF RLSDERRRELDKLYEGLPMEDAFKRLKHTLSGMGVAVPTLYKQYTELCHEDGVSFAAFSVDPDFGHCVDGLVTVDLTRLK DKKRERYLGVHRQDNAQLVLADGEGV
Specific function: Unknown
COG id: COG3176
COG function: function code R; Putative hemolysin
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65716; Mature: 65716
Theoretical pI: Translated: 8.60; Mature: 8.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIFTVDNLIDTRLPAISASPWLKRPVSAALRFLLHEEECNRIAAEFAFMQGVDFAGAVLE CEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH TLNFSFTVPDSDLDNIPAKGRVVIFANHPIGSLDALAMIKLIGEIRPDIKVVANEILMAI HCCCEEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH EPLHPILLPVRNMGGGTPKHHLEAIHRHLQNDGALLIFPAGEVSRLRPNGVRDTLWQSGF CCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHCCCC LKIALACDAPLLPLFADARNSATFYGTSMIYKPLSTLLLVKEMFRQKQRTMPIRIGELIA EEEEEECCCCCCHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHH LDALKAKDFDLKTKVTLLKNHLYRIGKNRPPLFKTQSPIARPECRAELKAALGACEHLGN HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC TQDGKTIYLYQHQGSNPIMREIGRLREQAFRAVGEGTGKRRDIDAFDSHYLHLVLWDKEA CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECHHH LEVVGAYRFASASKLHQELGANSLYSQSLFDFTDAFAPCFAEGLELGRSFVQPRYWGKRS HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC LDYLWFGIGAFLARNPQYRYLFGPVSISGQLPLAAREMLVDFYGRFYGANTQLASPKQAF HHHHHHHHHHHHHCCCCCEEEEECEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHH RLSDERRRELDKLYEGLPMEDAFKRLKHTLSGMGVAVPTLYKQYTELCHEDGVSFAAFSV CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEE DPDFGHCVDGLVTVDLTRLKDKKRERYLGVHRQDNAQLVLADGEGV CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCC >Mature Secondary Structure MIFTVDNLIDTRLPAISASPWLKRPVSAALRFLLHEEECNRIAAEFAFMQGVDFAGAVLE CEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH TLNFSFTVPDSDLDNIPAKGRVVIFANHPIGSLDALAMIKLIGEIRPDIKVVANEILMAI HCCCEEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH EPLHPILLPVRNMGGGTPKHHLEAIHRHLQNDGALLIFPAGEVSRLRPNGVRDTLWQSGF CCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHCCCC LKIALACDAPLLPLFADARNSATFYGTSMIYKPLSTLLLVKEMFRQKQRTMPIRIGELIA EEEEEECCCCCCHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHH LDALKAKDFDLKTKVTLLKNHLYRIGKNRPPLFKTQSPIARPECRAELKAALGACEHLGN HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC TQDGKTIYLYQHQGSNPIMREIGRLREQAFRAVGEGTGKRRDIDAFDSHYLHLVLWDKEA CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECHHH LEVVGAYRFASASKLHQELGANSLYSQSLFDFTDAFAPCFAEGLELGRSFVQPRYWGKRS HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC LDYLWFGIGAFLARNPQYRYLFGPVSISGQLPLAAREMLVDFYGRFYGANTQLASPKQAF HHHHHHHHHHHHHCCCCCEEEEECEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHH RLSDERRRELDKLYEGLPMEDAFKRLKHTLSGMGVAVPTLYKQYTELCHEDGVSFAAFSV CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEE DPDFGHCVDGLVTVDLTRLKDKKRERYLGVHRQDNAQLVLADGEGV CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA