BacMap

Definition	Shewanella amazonensis SB2B chromosome, complete genome.
Accession	NC_008700
Length	4,306,142

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The map label for this gene is dbpA [H]

Identifier: 119773890

GI number: 119773890

Start: 927691

End: 929094

Strand: Reverse

Name: dbpA [H]

Synonym: Sama_0752

Alternate gene names: 119773890

Gene position: 929094-927691 (Counterclockwise)

Preceding gene: 119773892

Following gene: 119773888

Centisome position: 21.58

GC content: 57.62

Gene sequence:

>1404_bases
TTGAGCACTTCAGATACCCAGCCTTCACTGGCTTTTTCCACCCTTAAGCTTAAAACCGAACTGCTTGAGAACCTGTCCTC
CATGGGCTACCACGAGATGACGCCCATTCAGGCACAGAGCTTGCCAGCCATTCTGGCGGGTGAGGATGTGATTGGTCAGG
GCAAAACCGGCTCGGGTAAAACCGCGGCCTTTGGTCTGGGGTTACTGAATAAGCTGGATGTGAAGCGTTTTCGCATTCAA
ACCCTGGTGCTGTGCCCTACCCGGGAACTGGCCGACCAGGTGGCGCAGGAAATCCGCACCCTCGCCCGCGGTATCCACAA
TGTAAAAGTACTGACCCTCTGCGGCGGCGTACCCATGGGACCACAGGTGGGCTCGCTGGAGCATGGCGCCCACATTATCG
TTGGTACGCCGGGGCGGATTGTCGATCACCTTGAGCGTGACCGCCTCGATTTGAGCAACCTCAATATGCTGGTGCTCGAT
GAAGCCGACCGCATGCTGGAAATGGGCTTTCAGCCGCAGCTCGATGCCATTATTGCCAGAAGCCCGAGGGAGCGTCAGAC
CCTGCTGTTCAGCGCCACCTTCCCCGAGCAGATTCAAACCATTGCCCAGCAGGTGATGTACAACCCTGTGATGGTGAAAG
TAGCCACAACCCACGAAAAGAGCACCATAGCCCAGCACTTCTACCATTTGGAAGACGACGGCGCGCGGATGCAGGCGCTG
CAATTGTTGCTGCTCGAGCACAAGCCCGAGAGCGCGGTGGTGTTCTGTAACACCAAGCGCGAAACCCAGAAGGTGGCCGA
TGACCTTACTGCTGCAGGTTTCAGCGTACTGGCGCTCCATGGCGACCTGGAGCAACGCGACAGAGACGAAACCCTGCTGC
AATTTGCCAACAAGAGCGCCTGCGTGCTGGTCGCCACCGACGTGGCCGCCCGAGGTTTGGATATCGACGCCCTCGATGCA
GTATTCAACTACCACGTGGCCCACGATACCGAGGTACACATTCACCGCATTGGCCGCACCGGCCGTGCGGGCAGCAAAGG
GGCCGCCTATACCTTCTTCAACGACAAAGACGGCTACAAGATAGCCTTGCTGGAAGAGTACCTGGAGCGCGACATTCAAA
GTGAGCCACTGCCGTCAGCAAGCCTCCTTGGCAGCATGCCTTTGGCGCCTGCCATGATCACCCTGCAAATCGACGGCGGC
AAAAAGGATAAGCTGCGCCCCGGCGATATTCTTGGCGCCCTCACCGGTGACAAGGGTATTGAAGGTGCCCAGGTGGGTAA
GATTCTGGTGACAGACTACCGTGCTTACGTAGCCGTTGATCGCAAGGTGGCTAAAAAGGCGCTGGGTAAAATCACCTCCG
GCCGCATTAAGGGCAAGTCTTACCGAGCCTGGCTGATGAAGTAA

Upstream 100 bases:

>100_bases
AAAAGAACCACACTCAGTCCCACTCCGATAGTTATAACCAGTACACAACGCCATTTCAGTGACCCGGCAAACGCCCGGTT
AGCCACCACAGGATACTTCC

Downstream 100 bases:

>100_bases
GCAGGCAATGTAAAGGGCAGCTCAGGCTGCCCTTTTCGTTGGGATGCGTCCCTTGCACTTTAATGGCAGAGACACCACTC
CTGCTCATCAAACAACGCTT

Product: ATP-dependent RNA helicase DbpA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 467; Mature: 466

Protein sequence:

>467_residues
MSTSDTQPSLAFSTLKLKTELLENLSSMGYHEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKLDVKRFRIQ
TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSLEHGAHIIVGTPGRIVDHLERDRLDLSNLNMLVLD
EADRMLEMGFQPQLDAIIARSPRERQTLLFSATFPEQIQTIAQQVMYNPVMVKVATTHEKSTIAQHFYHLEDDGARMQAL
QLLLLEHKPESAVVFCNTKRETQKVADDLTAAGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAARGLDIDALDA
VFNYHVAHDTEVHIHRIGRTGRAGSKGAAYTFFNDKDGYKIALLEEYLERDIQSEPLPSASLLGSMPLAPAMITLQIDGG
KKDKLRPGDILGALTGDKGIEGAQVGKILVTDYRAYVAVDRKVAKKALGKITSGRIKGKSYRAWLMK

Sequences:

>Translated_467_residues
MSTSDTQPSLAFSTLKLKTELLENLSSMGYHEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKLDVKRFRIQ
TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSLEHGAHIIVGTPGRIVDHLERDRLDLSNLNMLVLD
EADRMLEMGFQPQLDAIIARSPRERQTLLFSATFPEQIQTIAQQVMYNPVMVKVATTHEKSTIAQHFYHLEDDGARMQAL
QLLLLEHKPESAVVFCNTKRETQKVADDLTAAGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAARGLDIDALDA
VFNYHVAHDTEVHIHRIGRTGRAGSKGAAYTFFNDKDGYKIALLEEYLERDIQSEPLPSASLLGSMPLAPAMITLQIDGG
KKDKLRPGDILGALTGDKGIEGAQVGKILVTDYRAYVAVDRKVAKKALGKITSGRIKGKSYRAWLMK
>Mature_466_residues
STSDTQPSLAFSTLKLKTELLENLSSMGYHEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKLDVKRFRIQT
LVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSLEHGAHIIVGTPGRIVDHLERDRLDLSNLNMLVLDE
ADRMLEMGFQPQLDAIIARSPRERQTLLFSATFPEQIQTIAQQVMYNPVMVKVATTHEKSTIAQHFYHLEDDGARMQALQ
LLLLEHKPESAVVFCNTKRETQKVADDLTAAGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAARGLDIDALDAV
FNYHVAHDTEVHIHRIGRTGRAGSKGAAYTFFNDKDGYKIALLEEYLERDIQSEPLPSASLLGSMPLAPAMITLQIDGGK
KDKLRPGDILGALTGDKGIEGAQVGKILVTDYRAYVAVDRKVAKKALGKITSGRIKGKSYRAWLMK

Specific function: Has a helix-destabilizing activity, which is not coupled to the ATPase activity. Can unwind the 23S rRNA as well as 16S rRNA. Exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA. Could play a major role in ribosome ass

COG id: COG0513

COG function: function code LKJ; Superfamily II DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI45446747, Length=358, Percent_Identity=38.5474860335196, Blast_Score=251, Evalue=1e-66,
Organism=Homo sapiens, GI45446743, Length=358, Percent_Identity=38.5474860335196, Blast_Score=251, Evalue=1e-66,
Organism=Homo sapiens, GI7661920, Length=381, Percent_Identity=35.1706036745407, Blast_Score=248, Evalue=1e-65,
Organism=Homo sapiens, GI20149629, Length=347, Percent_Identity=38.6167146974063, Blast_Score=241, Evalue=9e-64,
Organism=Homo sapiens, GI4758138, Length=357, Percent_Identity=35.8543417366947, Blast_Score=237, Evalue=1e-62,
Organism=Homo sapiens, GI301171475, Length=371, Percent_Identity=37.7358490566038, Blast_Score=237, Evalue=2e-62,
Organism=Homo sapiens, GI148613856, Length=357, Percent_Identity=36.1344537815126, Blast_Score=237, Evalue=2e-62,
Organism=Homo sapiens, GI38201710, Length=357, Percent_Identity=36.1344537815126, Blast_Score=237, Evalue=2e-62,
Organism=Homo sapiens, GI87196351, Length=371, Percent_Identity=37.7358490566038, Blast_Score=237, Evalue=2e-62,
Organism=Homo sapiens, GI301171467, Length=373, Percent_Identity=37.8016085790885, Blast_Score=237, Evalue=2e-62,
Organism=Homo sapiens, GI169881239, Length=370, Percent_Identity=37.8378378378378, Blast_Score=235, Evalue=8e-62,
Organism=Homo sapiens, GI13514809, Length=370, Percent_Identity=37.8378378378378, Blast_Score=235, Evalue=8e-62,
Organism=Homo sapiens, GI50659095, Length=388, Percent_Identity=37.1134020618557, Blast_Score=232, Evalue=7e-61,
Organism=Homo sapiens, GI41327773, Length=358, Percent_Identity=36.8715083798883, Blast_Score=231, Evalue=9e-61,
Organism=Homo sapiens, GI262118318, Length=369, Percent_Identity=36.5853658536585, Blast_Score=228, Evalue=1e-59,
Organism=Homo sapiens, GI262231852, Length=369, Percent_Identity=36.5853658536585, Blast_Score=227, Evalue=1e-59,
Organism=Homo sapiens, GI13518015, Length=369, Percent_Identity=36.5853658536585, Blast_Score=227, Evalue=2e-59,
Organism=Homo sapiens, GI216548263, Length=369, Percent_Identity=36.5853658536585, Blast_Score=227, Evalue=2e-59,
Organism=Homo sapiens, GI164664518, Length=368, Percent_Identity=31.7934782608696, Blast_Score=226, Evalue=4e-59,
Organism=Homo sapiens, GI31542656, Length=383, Percent_Identity=35.2480417754569, Blast_Score=226, Evalue=5e-59,
Organism=Homo sapiens, GI222352149, Length=380, Percent_Identity=36.0526315789474, Blast_Score=221, Evalue=8e-58,
Organism=Homo sapiens, GI21071032, Length=361, Percent_Identity=36.5650969529086, Blast_Score=220, Evalue=2e-57,
Organism=Homo sapiens, GI13129006, Length=373, Percent_Identity=36.4611260053619, Blast_Score=214, Evalue=2e-55,
Organism=Homo sapiens, GI224593278, Length=356, Percent_Identity=35.6741573033708, Blast_Score=209, Evalue=4e-54,
Organism=Homo sapiens, GI41327771, Length=392, Percent_Identity=33.6734693877551, Blast_Score=208, Evalue=7e-54,
Organism=Homo sapiens, GI188035877, Length=361, Percent_Identity=34.3490304709141, Blast_Score=202, Evalue=5e-52,
Organism=Homo sapiens, GI83700235, Length=377, Percent_Identity=34.4827586206897, Blast_Score=201, Evalue=9e-52,
Organism=Homo sapiens, GI4758112, Length=358, Percent_Identity=32.4022346368715, Blast_Score=200, Evalue=3e-51,
Organism=Homo sapiens, GI18375623, Length=358, Percent_Identity=32.4022346368715, Blast_Score=200, Evalue=3e-51,
Organism=Homo sapiens, GI41327776, Length=347, Percent_Identity=34.0057636887608, Blast_Score=199, Evalue=5e-51,
Organism=Homo sapiens, GI21040371, Length=358, Percent_Identity=32.122905027933, Blast_Score=199, Evalue=7e-51,
Organism=Homo sapiens, GI4503529, Length=378, Percent_Identity=33.8624338624339, Blast_Score=197, Evalue=2e-50,
Organism=Homo sapiens, GI13514831, Length=351, Percent_Identity=35.8974358974359, Blast_Score=194, Evalue=2e-49,
Organism=Homo sapiens, GI51094101, Length=348, Percent_Identity=35.0574712643678, Blast_Score=193, Evalue=3e-49,
Organism=Homo sapiens, GI164419743, Length=348, Percent_Identity=35.0574712643678, Blast_Score=193, Evalue=3e-49,
Organism=Homo sapiens, GI256223453, Length=350, Percent_Identity=31.4285714285714, Blast_Score=187, Evalue=1e-47,
Organism=Homo sapiens, GI55749865, Length=379, Percent_Identity=29.5514511873351, Blast_Score=185, Evalue=7e-47,
Organism=Homo sapiens, GI8922886, Length=379, Percent_Identity=31.9261213720317, Blast_Score=181, Evalue=1e-45,
Organism=Homo sapiens, GI6005743, Length=379, Percent_Identity=31.9261213720317, Blast_Score=181, Evalue=1e-45,
Organism=Homo sapiens, GI41327779, Length=369, Percent_Identity=31.1653116531165, Blast_Score=180, Evalue=3e-45,
Organism=Homo sapiens, GI38327634, Length=330, Percent_Identity=35.1515151515151, Blast_Score=175, Evalue=8e-44,
Organism=Homo sapiens, GI38569503, Length=356, Percent_Identity=31.4606741573034, Blast_Score=171, Evalue=1e-42,
Organism=Homo sapiens, GI38569505, Length=356, Percent_Identity=31.4606741573034, Blast_Score=170, Evalue=2e-42,
Organism=Homo sapiens, GI62241022, Length=362, Percent_Identity=31.767955801105, Blast_Score=169, Evalue=7e-42,
Organism=Homo sapiens, GI164419732, Length=340, Percent_Identity=31.7647058823529, Blast_Score=166, Evalue=3e-41,
Organism=Homo sapiens, GI9506931, Length=400, Percent_Identity=29.25, Blast_Score=160, Evalue=3e-39,
Organism=Homo sapiens, GI62241024, Length=375, Percent_Identity=29.6, Blast_Score=157, Evalue=2e-38,
Organism=Homo sapiens, GI9966805, Length=322, Percent_Identity=32.2981366459627, Blast_Score=133, Evalue=4e-31,
Organism=Homo sapiens, GI4826686, Length=331, Percent_Identity=29.0030211480363, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI256773275, Length=422, Percent_Identity=29.3838862559242, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI17505907, Length=218, Percent_Identity=34.4036697247706, Blast_Score=116, Evalue=5e-26,
Organism=Homo sapiens, GI20336298, Length=218, Percent_Identity=34.4036697247706, Blast_Score=115, Evalue=1e-25,
Organism=Homo sapiens, GI154759257, Length=404, Percent_Identity=25.2475247524752, Blast_Score=107, Evalue=2e-23,
Organism=Escherichia coli, GI1787605, Length=458, Percent_Identity=54.1484716157205, Blast_Score=476, Evalue=1e-135,
Organism=Escherichia coli, GI87082221, Length=399, Percent_Identity=41.3533834586466, Blast_Score=285, Evalue=4e-78,
Organism=Escherichia coli, GI1787016, Length=375, Percent_Identity=36, Blast_Score=248, Evalue=8e-67,
Organism=Escherichia coli, GI1790214, Length=385, Percent_Identity=34.8051948051948, Blast_Score=222, Evalue=5e-59,
Organism=Escherichia coli, GI1788930, Length=356, Percent_Identity=35.6741573033708, Blast_Score=195, Evalue=6e-51,
Organism=Escherichia coli, GI48994977, Length=367, Percent_Identity=23.1607629427793, Blast_Score=69, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI71987143, Length=374, Percent_Identity=35.2941176470588, Blast_Score=256, Evalue=2e-68,
Organism=Caenorhabditis elegans, GI71995724, Length=375, Percent_Identity=36.5333333333333, Blast_Score=253, Evalue=2e-67,
Organism=Caenorhabditis elegans, GI17507121, Length=375, Percent_Identity=36.5333333333333, Blast_Score=252, Evalue=2e-67,
Organism=Caenorhabditis elegans, GI17552642, Length=380, Percent_Identity=37.1052631578947, Blast_Score=239, Evalue=3e-63,
Organism=Caenorhabditis elegans, GI17555296, Length=348, Percent_Identity=39.0804597701149, Blast_Score=236, Evalue=1e-62,
Organism=Caenorhabditis elegans, GI115533224, Length=379, Percent_Identity=36.9393139841689, Blast_Score=234, Evalue=9e-62,
Organism=Caenorhabditis elegans, GI71995718, Length=373, Percent_Identity=38.8739946380697, Blast_Score=233, Evalue=1e-61,
Organism=Caenorhabditis elegans, GI86570094, Length=356, Percent_Identity=38.4831460674157, Blast_Score=229, Evalue=3e-60,
Organism=Caenorhabditis elegans, GI17510307, Length=369, Percent_Identity=36.5853658536585, Blast_Score=225, Evalue=4e-59,
Organism=Caenorhabditis elegans, GI17510309, Length=369, Percent_Identity=36.5853658536585, Blast_Score=225, Evalue=4e-59,
Organism=Caenorhabditis elegans, GI71995514, Length=369, Percent_Identity=36.5853658536585, Blast_Score=224, Evalue=5e-59,
Organism=Caenorhabditis elegans, GI17552114, Length=375, Percent_Identity=30.9333333333333, Blast_Score=212, Evalue=3e-55,
Organism=Caenorhabditis elegans, GI17507945, Length=364, Percent_Identity=35.4395604395604, Blast_Score=211, Evalue=8e-55,
Organism=Caenorhabditis elegans, GI17507877, Length=376, Percent_Identity=36.1702127659575, Blast_Score=209, Evalue=3e-54,
Organism=Caenorhabditis elegans, GI32565321, Length=373, Percent_Identity=34.0482573726542, Blast_Score=206, Evalue=2e-53,
Organism=Caenorhabditis elegans, GI115532546, Length=365, Percent_Identity=34.7945205479452, Blast_Score=205, Evalue=3e-53,
Organism=Caenorhabditis elegans, GI115532548, Length=373, Percent_Identity=34.5844504021448, Blast_Score=204, Evalue=5e-53,
Organism=Caenorhabditis elegans, GI71999646, Length=372, Percent_Identity=33.8709677419355, Blast_Score=200, Evalue=1e-51,
Organism=Caenorhabditis elegans, GI17510559, Length=385, Percent_Identity=33.7662337662338, Blast_Score=199, Evalue=2e-51,
Organism=Caenorhabditis elegans, GI17507879, Length=387, Percent_Identity=35.1421188630491, Blast_Score=199, Evalue=2e-51,
Organism=Caenorhabditis elegans, GI71999644, Length=385, Percent_Identity=32.987012987013, Blast_Score=198, Evalue=4e-51,
Organism=Caenorhabditis elegans, GI17507881, Length=385, Percent_Identity=33.2467532467532, Blast_Score=194, Evalue=6e-50,
Organism=Caenorhabditis elegans, GI71982858, Length=357, Percent_Identity=30.812324929972, Blast_Score=192, Evalue=4e-49,
Organism=Caenorhabditis elegans, GI17505370, Length=347, Percent_Identity=33.7175792507205, Blast_Score=187, Evalue=8e-48,
Organism=Caenorhabditis elegans, GI17509811, Length=353, Percent_Identity=34.5609065155807, Blast_Score=187, Evalue=9e-48,
Organism=Caenorhabditis elegans, GI17537549, Length=359, Percent_Identity=32.8690807799443, Blast_Score=186, Evalue=3e-47,
Organism=Caenorhabditis elegans, GI17553716, Length=363, Percent_Identity=29.2011019283747, Blast_Score=181, Evalue=9e-46,
Organism=Caenorhabditis elegans, GI17536099, Length=388, Percent_Identity=30.6701030927835, Blast_Score=176, Evalue=3e-44,
Organism=Caenorhabditis elegans, GI17536101, Length=388, Percent_Identity=30.6701030927835, Blast_Score=175, Evalue=5e-44,
Organism=Caenorhabditis elegans, GI193206561, Length=361, Percent_Identity=29.3628808864266, Blast_Score=174, Evalue=6e-44,
Organism=Caenorhabditis elegans, GI17536103, Length=388, Percent_Identity=30.6701030927835, Blast_Score=172, Evalue=4e-43,
Organism=Caenorhabditis elegans, GI17508543, Length=373, Percent_Identity=32.4396782841823, Blast_Score=160, Evalue=2e-39,
Organism=Caenorhabditis elegans, GI193208216, Length=368, Percent_Identity=31.25, Blast_Score=155, Evalue=6e-38,
Organism=Caenorhabditis elegans, GI17556951, Length=395, Percent_Identity=27.3417721518987, Blast_Score=145, Evalue=5e-35,
Organism=Caenorhabditis elegans, GI17507641, Length=380, Percent_Identity=30.2631578947368, Blast_Score=140, Evalue=2e-33,
Organism=Caenorhabditis elegans, GI71990816, Length=388, Percent_Identity=33.5051546391753, Blast_Score=139, Evalue=4e-33,
Organism=Caenorhabditis elegans, GI32564046, Length=367, Percent_Identity=29.700272479564, Blast_Score=130, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI71982862, Length=202, Percent_Identity=30.6930693069307, Blast_Score=119, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI25148291, Length=343, Percent_Identity=27.4052478134111, Blast_Score=113, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI25148203, Length=389, Percent_Identity=22.879177377892, Blast_Score=112, Evalue=6e-25,
Organism=Caenorhabditis elegans, GI71997889, Length=363, Percent_Identity=27.5482093663912, Blast_Score=111, Evalue=7e-25,
Organism=Caenorhabditis elegans, GI71987152, Length=115, Percent_Identity=38.2608695652174, Blast_Score=92, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI25148205, Length=313, Percent_Identity=22.6837060702875, Blast_Score=86, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6325138, Length=390, Percent_Identity=37.9487179487179, Blast_Score=243, Evalue=3e-65,
Organism=Saccharomyces cerevisiae, GI6320224, Length=375, Percent_Identity=33.8666666666667, Blast_Score=243, Evalue=6e-65,
Organism=Saccharomyces cerevisiae, GI6321360, Length=363, Percent_Identity=38.8429752066116, Blast_Score=242, Evalue=7e-65,
Organism=Saccharomyces cerevisiae, GI6321856, Length=412, Percent_Identity=35.4368932038835, Blast_Score=239, Evalue=5e-64,
Organism=Saccharomyces cerevisiae, GI6324217, Length=363, Percent_Identity=34.9862258953168, Blast_Score=235, Evalue=9e-63,
Organism=Saccharomyces cerevisiae, GI6324778, Length=390, Percent_Identity=36.4102564102564, Blast_Score=231, Evalue=3e-61,
Organism=Saccharomyces cerevisiae, GI6320041, Length=366, Percent_Identity=31.9672131147541, Blast_Score=224, Evalue=2e-59,
Organism=Saccharomyces cerevisiae, GI6323021, Length=350, Percent_Identity=35.7142857142857, Blast_Score=213, Evalue=8e-56,
Organism=Saccharomyces cerevisiae, GI6322912, Length=374, Percent_Identity=33.9572192513369, Blast_Score=202, Evalue=8e-53,
Organism=Saccharomyces cerevisiae, GI6322323, Length=374, Percent_Identity=33.9572192513369, Blast_Score=202, Evalue=8e-53,
Organism=Saccharomyces cerevisiae, GI6323947, Length=345, Percent_Identity=36.231884057971, Blast_Score=199, Evalue=7e-52,
Organism=Saccharomyces cerevisiae, GI6321963, Length=375, Percent_Identity=33.3333333333333, Blast_Score=187, Evalue=4e-48,
Organism=Saccharomyces cerevisiae, GI6320119, Length=375, Percent_Identity=29.0666666666667, Blast_Score=184, Evalue=3e-47,
Organism=Saccharomyces cerevisiae, GI6324620, Length=380, Percent_Identity=30.7894736842105, Blast_Score=183, Evalue=5e-47,
Organism=Saccharomyces cerevisiae, GI6320449, Length=353, Percent_Identity=32.0113314447592, Blast_Score=183, Evalue=6e-47,
Organism=Saccharomyces cerevisiae, GI6322427, Length=360, Percent_Identity=35.5555555555556, Blast_Score=181, Evalue=2e-46,
Organism=Saccharomyces cerevisiae, GI6319714, Length=378, Percent_Identity=29.6296296296296, Blast_Score=180, Evalue=5e-46,
Organism=Saccharomyces cerevisiae, GI6321111, Length=379, Percent_Identity=31.3984168865435, Blast_Score=174, Evalue=3e-44,
Organism=Saccharomyces cerevisiae, GI6319618, Length=402, Percent_Identity=30.3482587064677, Blast_Score=170, Evalue=4e-43,
Organism=Saccharomyces cerevisiae, GI6321267, Length=364, Percent_Identity=32.1428571428571, Blast_Score=158, Evalue=2e-39,
Organism=Saccharomyces cerevisiae, GI6320173, Length=207, Percent_Identity=40.0966183574879, Blast_Score=150, Evalue=4e-37,
Organism=Saccharomyces cerevisiae, GI6320400, Length=373, Percent_Identity=29.2225201072386, Blast_Score=144, Evalue=3e-35,
Organism=Saccharomyces cerevisiae, GI6323306, Length=411, Percent_Identity=23.1143552311436, Blast_Score=109, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6324366, Length=422, Percent_Identity=24.4075829383886, Blast_Score=105, Evalue=1e-23,
Organism=Saccharomyces cerevisiae, GI6322876, Length=181, Percent_Identity=33.1491712707182, Blast_Score=88, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24662330, Length=361, Percent_Identity=40.4432132963989, Blast_Score=260, Evalue=1e-69,
Organism=Drosophila melanogaster, GI24645031, Length=383, Percent_Identity=35.7702349869452, Blast_Score=252, Evalue=4e-67,
Organism=Drosophila melanogaster, GI24642151, Length=356, Percent_Identity=38.2022471910112, Blast_Score=246, Evalue=2e-65,
Organism=Drosophila melanogaster, GI28574962, Length=406, Percent_Identity=33.9901477832512, Blast_Score=238, Evalue=6e-63,
Organism=Drosophila melanogaster, GI21355075, Length=369, Percent_Identity=36.3143631436314, Blast_Score=236, Evalue=3e-62,
Organism=Drosophila melanogaster, GI24584399, Length=380, Percent_Identity=37.1052631578947, Blast_Score=231, Evalue=7e-61,
Organism=Drosophila melanogaster, GI24585582, Length=352, Percent_Identity=37.7840909090909, Blast_Score=228, Evalue=5e-60,
Organism=Drosophila melanogaster, GI24644487, Length=385, Percent_Identity=33.7662337662338, Blast_Score=226, Evalue=2e-59,
Organism=Drosophila melanogaster, GI45551833, Length=385, Percent_Identity=33.7662337662338, Blast_Score=226, Evalue=2e-59,
Organism=Drosophila melanogaster, GI24644485, Length=385, Percent_Identity=33.7662337662338, Blast_Score=226, Evalue=2e-59,
Organism=Drosophila melanogaster, GI24644479, Length=373, Percent_Identity=34.0482573726542, Blast_Score=226, Evalue=2e-59,
Organism=Drosophila melanogaster, GI24644483, Length=385, Percent_Identity=33.7662337662338, Blast_Score=226, Evalue=3e-59,
Organism=Drosophila melanogaster, GI281361218, Length=385, Percent_Identity=33.7662337662338, Blast_Score=226, Evalue=3e-59,
Organism=Drosophila melanogaster, GI24644481, Length=385, Percent_Identity=33.7662337662338, Blast_Score=226, Evalue=3e-59,
Organism=Drosophila melanogaster, GI17985987, Length=373, Percent_Identity=36.9973190348526, Blast_Score=224, Evalue=7e-59,
Organism=Drosophila melanogaster, GI18857967, Length=402, Percent_Identity=34.3283582089552, Blast_Score=224, Evalue=1e-58,
Organism=Drosophila melanogaster, GI28575014, Length=381, Percent_Identity=35.4330708661417, Blast_Score=216, Evalue=4e-56,
Organism=Drosophila melanogaster, GI24583281, Length=369, Percent_Identity=30.6233062330623, Blast_Score=213, Evalue=2e-55,
Organism=Drosophila melanogaster, GI24583279, Length=369, Percent_Identity=30.6233062330623, Blast_Score=213, Evalue=2e-55,
Organism=Drosophila melanogaster, GI24582080, Length=375, Percent_Identity=34.1333333333333, Blast_Score=212, Evalue=5e-55,
Organism=Drosophila melanogaster, GI24582078, Length=375, Percent_Identity=34.1333333333333, Blast_Score=212, Evalue=5e-55,
Organism=Drosophila melanogaster, GI17136248, Length=375, Percent_Identity=34.1333333333333, Blast_Score=212, Evalue=5e-55,
Organism=Drosophila melanogaster, GI24582075, Length=375, Percent_Identity=34.1333333333333, Blast_Score=212, Evalue=5e-55,
Organism=Drosophila melanogaster, GI17977678, Length=361, Percent_Identity=33.7950138504155, Blast_Score=209, Evalue=3e-54,
Organism=Drosophila melanogaster, GI21356161, Length=376, Percent_Identity=34.5744680851064, Blast_Score=203, Evalue=2e-52,
Organism=Drosophila melanogaster, GI17136814, Length=376, Percent_Identity=35.6382978723404, Blast_Score=202, Evalue=3e-52,
Organism=Drosophila melanogaster, GI24584994, Length=385, Percent_Identity=31.4285714285714, Blast_Score=198, Evalue=6e-51,
Organism=Drosophila melanogaster, GI281365720, Length=319, Percent_Identity=35.1097178683386, Blast_Score=193, Evalue=3e-49,
Organism=Drosophila melanogaster, GI24581954, Length=378, Percent_Identity=32.010582010582, Blast_Score=189, Evalue=4e-48,
Organism=Drosophila melanogaster, GI24581952, Length=378, Percent_Identity=32.010582010582, Blast_Score=189, Evalue=4e-48,
Organism=Drosophila melanogaster, GI24581956, Length=378, Percent_Identity=32.010582010582, Blast_Score=189, Evalue=4e-48,
Organism=Drosophila melanogaster, GI28571808, Length=350, Percent_Identity=34.2857142857143, Blast_Score=184, Evalue=2e-46,
Organism=Drosophila melanogaster, GI28571809, Length=350, Percent_Identity=34.2857142857143, Blast_Score=184, Evalue=2e-46,
Organism=Drosophila melanogaster, GI24666101, Length=370, Percent_Identity=33.2432432432432, Blast_Score=168, Evalue=8e-42,
Organism=Drosophila melanogaster, GI17647335, Length=399, Percent_Identity=30.0751879699248, Blast_Score=166, Evalue=4e-41,
Organism=Drosophila melanogaster, GI24642822, Length=391, Percent_Identity=30.690537084399, Blast_Score=164, Evalue=1e-40,
Organism=Drosophila melanogaster, GI21355559, Length=369, Percent_Identity=32.2493224932249, Blast_Score=164, Evalue=2e-40,
Organism=Drosophila melanogaster, GI18859659, Length=444, Percent_Identity=29.0540540540541, Blast_Score=150, Evalue=1e-36,
Organism=Drosophila melanogaster, GI28571338, Length=444, Percent_Identity=29.0540540540541, Blast_Score=150, Evalue=2e-36,
Organism=Drosophila melanogaster, GI24643725, Length=391, Percent_Identity=26.3427109974425, Blast_Score=131, Evalue=1e-30,
Organism=Drosophila melanogaster, GI24668515, Length=324, Percent_Identity=29.9382716049383, Blast_Score=131, Evalue=1e-30,
Organism=Drosophila melanogaster, GI19920478, Length=361, Percent_Identity=30.7479224376731, Blast_Score=123, Evalue=3e-28,
Organism=Drosophila melanogaster, GI20130173, Length=355, Percent_Identity=27.6056338028169, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24640164, Length=351, Percent_Identity=20.2279202279202, Blast_Score=82, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005580
- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR000629
- InterPro:   IPR014014 [H]

Pfam domain/function: PF03880 DbpA; PF00270 DEAD; PF00271 Helicase_C [H]

EC number: =3.6.4.13 [H]

Molecular weight: Translated: 51054; Mature: 50922

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: PS00039 DEAD_ATP_HELICASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTSDTQPSLAFSTLKLKTELLENLSSMGYHEMTPIQAQSLPAILAGEDVIGQGKTGSGK
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCEEEECCCCCCCCCCCCCC
TAAFGLGLLNKLDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMG
CHHHHHHHHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCC
PQVGSLEHGAHIIVGTPGRIVDHLERDRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIAR
CCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCCEEEECCHHHHHHCCCCCCHHHHHHC
SPRERQTLLFSATFPEQIQTIAQQVMYNPVMVKVATTHEKSTIAQHFYHLEDDGARMQAL
CCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCCHHHHHH
QLLLLEHKPESAVVFCNTKRETQKVADDLTAAGFSVLALHGDLEQRDRDETLLQFANKSA
HHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCEEEEEEECCHHHCCHHHHHHHHCCCCE
CVLVATDVAARGLDIDALDAVFNYHVAHDTEVHIHRIGRTGRAGSKGAAYTFFNDKDGYK
EEEEEECHHHCCCCHHHHHHHHHHEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCE
IALLEEYLERDIQSEPLPSASLLGSMPLAPAMITLQIDGGKKDKLRPGDILGALTGDKGI
EHHHHHHHHHHCCCCCCCCHHHHCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCC
EGAQVGKILVTDYRAYVAVDRKVAKKALGKITSGRIKGKSYRAWLMK
CCHHHCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCC
>Mature Secondary Structure 
STSDTQPSLAFSTLKLKTELLENLSSMGYHEMTPIQAQSLPAILAGEDVIGQGKTGSGK
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCEEEECCCCCCCCCCCCCC
TAAFGLGLLNKLDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMG
CHHHHHHHHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCC
PQVGSLEHGAHIIVGTPGRIVDHLERDRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIAR
CCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCCEEEECCHHHHHHCCCCCCHHHHHHC
SPRERQTLLFSATFPEQIQTIAQQVMYNPVMVKVATTHEKSTIAQHFYHLEDDGARMQAL
CCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCCHHHHHH
QLLLLEHKPESAVVFCNTKRETQKVADDLTAAGFSVLALHGDLEQRDRDETLLQFANKSA
HHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCEEEEEEECCHHHCCHHHHHHHHCCCCE
CVLVATDVAARGLDIDALDAVFNYHVAHDTEVHIHRIGRTGRAGSKGAAYTFFNDKDGYK
EEEEEECHHHCCCCHHHHHHHHHHEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCE
IALLEEYLERDIQSEPLPSASLLGSMPLAPAMITLQIDGGKKDKLRPGDILGALTGDKGI
EHHHHHHHHHHCCCCCCCCHHHHCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCC
EGAQVGKILVTDYRAYVAVDRKVAKKALGKITSGRIKGKSYRAWLMK
CCHHHCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2216714; 8253085; 9097039; 9278503; 9016593; 11350034 [H]