Click here to switch to the map view.

The map label for this gene is 119773830

Identifier: 119773830

GI number: 119773830

Start: 855694

End: 856635

Strand: Reverse

Name: 119773830

Synonym: Sama_0692

Alternate gene names: NA

Gene position: 856635-855694 (Counterclockwise)

Preceding gene: 119773834

Following gene: 119773829

Centisome position: 19.89

GC content: 57.96

Gene sequence:

>942_bases
ATGCCGGATATTGTTATTGCATTTTTTGCCTTGGGCCTCCTGGCCGGAGTGATCAAATCGGATCTTAAGGTCCCACAATC
CATCTACGAGACCCTGTCGATTTTGCTGATGCTGACACTGGGGCTTAAAGGCGGTATGTCACTACATGGTCAAACCGACC
ACCTTCAACCCATGGAACTGCTGACCGTGGTTGGACTGGGTTTTATCATTCCACTGGCGCTGTTTCCGATACTGCGACTG
CTGGTACGACTCACAACCTCTGATGCCGCCAGCATCGCCGCTCACTATGGCTCGGTCAGCGCGGGAACCTTTGCAGTGGT
GATGGCCATGGCCGAAACCGCAGGCTGGGAGCTGAGACCTGAAACCACCCTGTATCTGGTCATGCTGGAACTGCCCGCCA
TCGTGATTATGCTCTGGCTGCATCGTCGCCTCAGCAAGGGGGAGCAAACCCAAAGCGGCGGCAATATTCTCCATGAAGCC
CTGACCAGCCGTGGTGTGGTCTTGCTTCTGGGGGGTGTCATCATCGGCTGGTTGTACGGACCTCAGGGCCTGGAGCCTCT
GGCCCCCATGTTACTCAGCGGTTTTAAAACCCTGCTGGCGCTGTTCCTGCTGGAGATGGGGCTGGTGACTGCCAAGGTGT
GTATTCCACTGCCGCTGAAACAGTGGCGCCTACTGGCATTCGCCGCCATAGCCCCCTTTGTACTGGCATGGGTCGGCATT
GGTGCTGGCATCACCATGGGCCTACCCGCAGGCACCGTGCTGGTGCTGGCAGGCCTCACGGCCAGCGCCTCCTATATCGC
AGCGCCGGCCGCTATTCGCGCCGCCATTCCCGATGCCAACATTGGCCTGGCCATGTTGGCATCCCTCGGAATCACCTTCC
CGGTGAATGTGCTGATAGGGTTGCCACTTTACCAGCACTGGATTGCCGGCCTGATGCAATAA

Upstream 100 bases:

>100_bases
GCTCATAAAATTTATTTTTCAATATAGCTAATCATGGGCACAATCTCCAGCCGTCAAACTTGCCTTATCCCCGGTGGAAA
CCGGGCTGCTGGAGTCAACT

Downstream 100 bases:

>100_bases
CAAATGTGTAGGGTATGATGCGGGCCTCTGGCCCGCTTTTTTGTTTTCATGATAGGCTGAACACCTTTGATAACAAGATG
ATGGAAGACAATGGATGTCA

Product: hypothetical protein

Products: NA

Alternate protein names: Sodium-Dependent Bicarbonate Transporter; Sodium Bicarbonate Cotransporter; Conserved Domain Protein; Permease-Like Protein; SBT Type Permease Sodium-Bicarbonate; Domain Transmembrane Protein

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MPDIVIAFFALGLLAGVIKSDLKVPQSIYETLSILLMLTLGLKGGMSLHGQTDHLQPMELLTVVGLGFIIPLALFPILRL
LVRLTTSDAASIAAHYGSVSAGTFAVVMAMAETAGWELRPETTLYLVMLELPAIVIMLWLHRRLSKGEQTQSGGNILHEA
LTSRGVVLLLGGVIIGWLYGPQGLEPLAPMLLSGFKTLLALFLLEMGLVTAKVCIPLPLKQWRLLAFAAIAPFVLAWVGI
GAGITMGLPAGTVLVLAGLTASASYIAAPAAIRAAIPDANIGLAMLASLGITFPVNVLIGLPLYQHWIAGLMQ

Sequences:

>Translated_313_residues
MPDIVIAFFALGLLAGVIKSDLKVPQSIYETLSILLMLTLGLKGGMSLHGQTDHLQPMELLTVVGLGFIIPLALFPILRL
LVRLTTSDAASIAAHYGSVSAGTFAVVMAMAETAGWELRPETTLYLVMLELPAIVIMLWLHRRLSKGEQTQSGGNILHEA
LTSRGVVLLLGGVIIGWLYGPQGLEPLAPMLLSGFKTLLALFLLEMGLVTAKVCIPLPLKQWRLLAFAAIAPFVLAWVGI
GAGITMGLPAGTVLVLAGLTASASYIAAPAAIRAAIPDANIGLAMLASLGITFPVNVLIGLPLYQHWIAGLMQ
>Mature_312_residues
PDIVIAFFALGLLAGVIKSDLKVPQSIYETLSILLMLTLGLKGGMSLHGQTDHLQPMELLTVVGLGFIIPLALFPILRLL
VRLTTSDAASIAAHYGSVSAGTFAVVMAMAETAGWELRPETTLYLVMLELPAIVIMLWLHRRLSKGEQTQSGGNILHEAL
TSRGVVLLLGGVIIGWLYGPQGLEPLAPMLLSGFKTLLALFLLEMGLVTAKVCIPLPLKQWRLLAFAAIAPFVLAWVGIG
AGITMGLPAGTVLVLAGLTASASYIAAPAAIRAAIPDANIGLAMLASLGITFPVNVLIGLPLYQHWIAGLMQ

Specific function: Unknown

COG id: COG3329

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33040; Mature: 32909

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDIVIAFFALGLLAGVIKSDLKVPQSIYETLSILLMLTLGLKGGMSLHGQTDHLQPMEL
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
LTVVGLGFIIPLALFPILRLLVRLTTSDAASIAAHYGSVSAGTFAVVMAMAETAGWELRP
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCC
ETTLYLVMLELPAIVIMLWLHRRLSKGEQTQSGGNILHEALTSRGVVLLLGGVIIGWLYG
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCC
PQGLEPLAPMLLSGFKTLLALFLLEMGLVTAKVCIPLPLKQWRLLAFAAIAPFVLAWVGI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
GAGITMGLPAGTVLVLAGLTASASYIAAPAAIRAAIPDANIGLAMLASLGITFPVNVLIG
CCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHC
LPLYQHWIAGLMQ
CHHHHHHHHHHCC
>Mature Secondary Structure 
PDIVIAFFALGLLAGVIKSDLKVPQSIYETLSILLMLTLGLKGGMSLHGQTDHLQPMEL
CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
LTVVGLGFIIPLALFPILRLLVRLTTSDAASIAAHYGSVSAGTFAVVMAMAETAGWELRP
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCC
ETTLYLVMLELPAIVIMLWLHRRLSKGEQTQSGGNILHEALTSRGVVLLLGGVIIGWLYG
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCC
PQGLEPLAPMLLSGFKTLLALFLLEMGLVTAKVCIPLPLKQWRLLAFAAIAPFVLAWVGI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
GAGITMGLPAGTVLVLAGLTASASYIAAPAAIRAAIPDANIGLAMLASLGITFPVNVLIG
CCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHC
LPLYQHWIAGLMQ
CHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA