Click here to switch to the map view.

The map label for this gene is 119773779

Identifier: 119773779

GI number: 119773779

Start: 796210

End: 797187

Strand: Reverse

Name: 119773779

Synonym: Sama_0641

Alternate gene names: NA

Gene position: 797187-796210 (Counterclockwise)

Preceding gene: 119773782

Following gene: 119773778

Centisome position: 18.51

GC content: 56.75

Gene sequence:

>978_bases
ATGTGGAATAAGTTCAACCTATGTAATCTGTGGCTGGCACTGGTTTTTGTGCTCTTGTCAGGCTGTTCCCCGAAGGAAGC
CGATGGGGTGTTGGTGCTCAGTGACGCACCAAGTTATGGTGCAACCCTGAGCCAGGATGCCAGCCTGGCGCTCATCAGCA
CCGAGTCCGCTGGTGTTGAGCTGTGGCAACTCTCTCCCAAAACCCTCAAGCACAGATGGCAGCACGGACCAACCAGTAAC
GAGTCCATTGCCCTTGCCCTGTCGGACAACGGCGTTTATGCCGCCTCATTAAGCCGGGATTCAGTTGCACTGTGGAGGAT
AGATGACGGCGCTCAGGTGGGGCTTTGGTCACTGCCCTCAGCCGGGCAGGCGCTGGCGCTTTCTGATGGCGGTGGCCTCT
TGATAGGACTCGCCGATGGCTCAGTGATGTCTCTCGTGGCCGGGCAAACCAAACTTATCCGTTTCCTTGGACACAGCGAG
AAGGTCAACAGCGTGGCGCTGTCGGCCGATGGCAAGCTGGCACTCAGCGGAGGCAACGACTATCAAGCCATTCTCTGGCA
GGCCGATACCGGACAGCCATTGCAAACTCAGCAATTTGACGCTCGGGTACTGGCAGTGGCGATATCCTCCGACGGTGAGC
TGGCCTTTGCCGCCGACGCCAAGGCCGATGCCCGGATTTTTGCCAGCCAAACAGGCAAAGTCATCAGCGAATTACGGATA
AAGCAGCGCACCATGACCTTTTCTGCCGCCCGCTTCAGCCAAAGCAATACGGCCTTGCTCACGGGAACCCCCTTTCGGGA
AGTGCTTCGCTGGCAAACAAAAGATGGAAAAGTAACCGGTCGCTGGCAGGTAAGTCTCTCCAATCGACCGCAAAACAAAG
GTGCCGTTGTATACTCAGTGGCCGAAACCGGCCTGCCACAAACACCTGTTGCCAGTATCAGCAGCAGTGGCAGAGTGGAA
TACTGGTCAACGAGGTAA

Upstream 100 bases:

>100_bases
TTCATCAAACCGCCCCACTTTATACTAGTTACTAAGCTTATGCCATGGGCAGCACCAAGCGGGGGCTGTCCGGAAATACA
GACAGCAATGAGACCTGGGC

Downstream 100 bases:

>100_bases
CAATGCAAACAGATATAAAGGCAATGCAACAGCAAATCGAAGAGCTGCAAACCAAGCTCGCCTTCACCGAAATGACAGTG
GAAGAGCTTAATCAGGAAGT

Product: hypothetical protein

Products: NA

Alternate protein names: Vegetatible Incompatibility; Lipoprotein; WD40 Domain-Containing Protein; WD-40 Repeat-Containing G-Protein; WD Domain G-Beta Repeat-Containing Protein; WD40 Domain Protein; WD-40 Repeat Protein

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MWNKFNLCNLWLALVFVLLSGCSPKEADGVLVLSDAPSYGATLSQDASLALISTESAGVELWQLSPKTLKHRWQHGPTSN
ESIALALSDNGVYAASLSRDSVALWRIDDGAQVGLWSLPSAGQALALSDGGGLLIGLADGSVMSLVAGQTKLIRFLGHSE
KVNSVALSADGKLALSGGNDYQAILWQADTGQPLQTQQFDARVLAVAISSDGELAFAADAKADARIFASQTGKVISELRI
KQRTMTFSAARFSQSNTALLTGTPFREVLRWQTKDGKVTGRWQVSLSNRPQNKGAVVYSVAETGLPQTPVASISSSGRVE
YWSTR

Sequences:

>Translated_325_residues
MWNKFNLCNLWLALVFVLLSGCSPKEADGVLVLSDAPSYGATLSQDASLALISTESAGVELWQLSPKTLKHRWQHGPTSN
ESIALALSDNGVYAASLSRDSVALWRIDDGAQVGLWSLPSAGQALALSDGGGLLIGLADGSVMSLVAGQTKLIRFLGHSE
KVNSVALSADGKLALSGGNDYQAILWQADTGQPLQTQQFDARVLAVAISSDGELAFAADAKADARIFASQTGKVISELRI
KQRTMTFSAARFSQSNTALLTGTPFREVLRWQTKDGKVTGRWQVSLSNRPQNKGAVVYSVAETGLPQTPVASISSSGRVE
YWSTR
>Mature_325_residues
MWNKFNLCNLWLALVFVLLSGCSPKEADGVLVLSDAPSYGATLSQDASLALISTESAGVELWQLSPKTLKHRWQHGPTSN
ESIALALSDNGVYAASLSRDSVALWRIDDGAQVGLWSLPSAGQALALSDGGGLLIGLADGSVMSLVAGQTKLIRFLGHSE
KVNSVALSADGKLALSGGNDYQAILWQADTGQPLQTQQFDARVLAVAISSDGELAFAADAKADARIFASQTGKVISELRI
KQRTMTFSAARFSQSNTALLTGTPFREVLRWQTKDGKVTGRWQVSLSNRPQNKGAVVYSVAETGLPQTPVASISSSGRVE
YWSTR

Specific function: Unknown

COG id: COG2319

COG function: function code R; FOG: WD40 repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34585; Mature: 34585

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50082 WD_REPEATS_2 ; PS50294 WD_REPEATS_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWNKFNLCNLWLALVFVLLSGCSPKEADGVLVLSDAPSYGATLSQDASLALISTESAGVE
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCEE
LWQLSPKTLKHRWQHGPTSNESIALALSDNGVYAASLSRDSVALWRIDDGAQVGLWSLPS
EEECCHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEECCCCEEEEEECCCCEEEEEECCC
AGQALALSDGGGLLIGLADGSVMSLVAGQTKLIRFLGHSEKVNSVALSADGKLALSGGND
CCCEEEEECCCEEEEEECCCCEEEECCCHHHHHHHHCCCCCCCEEEEECCCEEEEECCCC
YQAILWQADTGQPLQTQQFDARVLAVAISSDGELAFAADAKADARIFASQTGKVISELRI
EEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCEEEEEHHHHHHHHHHHH
KQRTMTFSAARFSQSNTALLTGTPFREVLRWQTKDGKVTGRWQVSLSNRPQNKGAVVYSV
HHHHEEEEEHCCCCCCCEEEECCCHHHHHEEECCCCEEEEEEEEEECCCCCCCCEEEEEE
AETGLPQTPVASISSSGRVEYWSTR
ECCCCCCCCHHHCCCCCCEEEEECC
>Mature Secondary Structure
MWNKFNLCNLWLALVFVLLSGCSPKEADGVLVLSDAPSYGATLSQDASLALISTESAGVE
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCEE
LWQLSPKTLKHRWQHGPTSNESIALALSDNGVYAASLSRDSVALWRIDDGAQVGLWSLPS
EEECCHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEECCCCEEEEEECCCCEEEEEECCC
AGQALALSDGGGLLIGLADGSVMSLVAGQTKLIRFLGHSEKVNSVALSADGKLALSGGND
CCCEEEEECCCEEEEEECCCCEEEECCCHHHHHHHHCCCCCCCEEEEECCCEEEEECCCC
YQAILWQADTGQPLQTQQFDARVLAVAISSDGELAFAADAKADARIFASQTGKVISELRI
EEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCEEEEEHHHHHHHHHHHH
KQRTMTFSAARFSQSNTALLTGTPFREVLRWQTKDGKVTGRWQVSLSNRPQNKGAVVYSV
HHHHEEEEEHCCCCCCCEEEECCCHHHHHEEECCCCEEEEEEEEEECCCCCCCCEEEEEE
AETGLPQTPVASISSSGRVEYWSTR
ECCCCCCCCHHHCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA