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The map label for this gene is ltrA [H]

Identifier: 119773541

GI number: 119773541

Start: 498804

End: 499745

Strand: Reverse

Name: ltrA [H]

Synonym: Sama_0401

Alternate gene names: 119773541

Gene position: 499745-498804 (Counterclockwise)

Preceding gene: 119773546

Following gene: 119773540

Centisome position: 11.61

GC content: 53.29

Gene sequence:

>942_bases
ATGGATTTGAATCGCGTGCAGATATTTGCGGCCGTGGTGGAGCATGGCAGCTTTACCGCCGCAGCCACCGCACTGGGGAT
CACCAAAGCCACGGTGAGCCGTAAAGTCGCCGAGCTTGAAGAAAACGCCGGTGTCCAGCTGCTGTTTCGCACCACCCGCG
CGCTCAAGTTAACTGAAGCGGGCAGTAACTATTACCACAGGGTAAGCCGTGTGCTGTCGGAGCTGCAGCAGGCCGAAACC
CAGCTGAGCGCCAGTCAGCAAAATATCCGCGGCAAGTTGAAAATTGTCTGCCCCATAGAACTGGGGCAGTTGTTTCTTGG
CAGTATTCTCGCCCGCTTTTTAAAGCAATATCCCGATATCCAAATCAATACCGAACTCACCAATCGCCGGGTCGACGTGA
TTGAAGAAGATATCGATATGTTGTTTCAAATCGCCGAACCCAAGGATCCTCGCCTCACCTGCCATGCCATGGTAAAGGCA
GACAAGATGCTGCTTGCCTCCCCCGAATATCTGGCACAATTCGGCACACCAAAGACACCGGCCGATTTGGCACACCACAG
GGCTATTCGGCTGGTATCGGCCCATATCGACGGCGTCTGGAAGATATTTGATGGTAAACAGTGGCAGGTTTACGAACCCG
TGGCCCAGCTCACCGTCAATAATGTCACCCTGGCAAGGGAGGCCGCCATCGAGGGCTTGGGCATAGCGACCGTGCCAACC
CTCATCGCCAGCGAGGCCCTCGCCTCAGGTAAACTGGTCCCGGTGCTGGAAGACTATCCCATGCATCAGGCGAAAATTAC
CCTCAGCTATCCGCAAAGTGCATATTTACCAAGACGATACCGGGTATTTATCGCGTTTATTTATCAGCACCTGGTTGCCC
AGTTCGGTGATCAGGTGCTTGAAATACCTGACTTCATTAACATCAATTCATCTCAGGTTTAA

Upstream 100 bases:

>100_bases
TACAATAGACTCCTTAATCAGTGGCTGCTATTGTAAAACTGTCTCTTAAATATTATTAGTCAGTGAAAATTCAACCCACT
GTTTCACAGGTGTAACAATA

Downstream 100 bases:

>100_bases
TGGGCAAAAGATTGCGTTTACCGCATGATTGCTTATCCTGTTAGGCATGCCCTGACGCTCAGGGCTGGGGGATCATGGAA
GAAGACAACCTCAAGAAAAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MDLNRVQIFAAVVEHGSFTAAATALGITKATVSRKVAELEENAGVQLLFRTTRALKLTEAGSNYYHRVSRVLSELQQAET
QLSASQQNIRGKLKIVCPIELGQLFLGSILARFLKQYPDIQINTELTNRRVDVIEEDIDMLFQIAEPKDPRLTCHAMVKA
DKMLLASPEYLAQFGTPKTPADLAHHRAIRLVSAHIDGVWKIFDGKQWQVYEPVAQLTVNNVTLAREAAIEGLGIATVPT
LIASEALASGKLVPVLEDYPMHQAKITLSYPQSAYLPRRYRVFIAFIYQHLVAQFGDQVLEIPDFININSSQV

Sequences:

>Translated_313_residues
MDLNRVQIFAAVVEHGSFTAAATALGITKATVSRKVAELEENAGVQLLFRTTRALKLTEAGSNYYHRVSRVLSELQQAET
QLSASQQNIRGKLKIVCPIELGQLFLGSILARFLKQYPDIQINTELTNRRVDVIEEDIDMLFQIAEPKDPRLTCHAMVKA
DKMLLASPEYLAQFGTPKTPADLAHHRAIRLVSAHIDGVWKIFDGKQWQVYEPVAQLTVNNVTLAREAAIEGLGIATVPT
LIASEALASGKLVPVLEDYPMHQAKITLSYPQSAYLPRRYRVFIAFIYQHLVAQFGDQVLEIPDFININSSQV
>Mature_313_residues
MDLNRVQIFAAVVEHGSFTAAATALGITKATVSRKVAELEENAGVQLLFRTTRALKLTEAGSNYYHRVSRVLSELQQAET
QLSASQQNIRGKLKIVCPIELGQLFLGSILARFLKQYPDIQINTELTNRRVDVIEEDIDMLFQIAEPKDPRLTCHAMVKA
DKMLLASPEYLAQFGTPKTPADLAHHRAIRLVSAHIDGVWKIFDGKQWQVYEPVAQLTVNNVTLAREAAIEGLGIATVPT
LIASEALASGKLVPVLEDYPMHQAKITLSYPQSAYLPRRYRVFIAFIYQHLVAQFGDQVLEIPDFININSSQV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=294, Percent_Identity=32.9931972789116, Blast_Score=151, Evalue=6e-38,
Organism=Escherichia coli, GI1786401, Length=298, Percent_Identity=30.5369127516779, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1789440, Length=302, Percent_Identity=28.1456953642384, Blast_Score=138, Evalue=5e-34,
Organism=Escherichia coli, GI87081978, Length=300, Percent_Identity=29, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1789639, Length=293, Percent_Identity=31.0580204778157, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1787128, Length=302, Percent_Identity=27.4834437086093, Blast_Score=130, Evalue=9e-32,
Organism=Escherichia coli, GI1787589, Length=279, Percent_Identity=27.2401433691756, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1789173, Length=267, Percent_Identity=27.7153558052434, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1788706, Length=265, Percent_Identity=25.6603773584906, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1790011, Length=262, Percent_Identity=25.9541984732824, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI157672245, Length=150, Percent_Identity=31.3333333333333, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1786448, Length=298, Percent_Identity=24.496644295302, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787601, Length=136, Percent_Identity=25.7352941176471, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789204, Length=260, Percent_Identity=25.3846153846154, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786713, Length=129, Percent_Identity=34.8837209302326, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788481, Length=181, Percent_Identity=28.1767955801105, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI87082132, Length=269, Percent_Identity=23.4200743494424, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788748, Length=169, Percent_Identity=30.7692307692308, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34880; Mature: 34880

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNRVQIFAAVVEHGSFTAAATALGITKATVSRKVAELEENAGVQLLFRTTRALKLTEA
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHEEEECC
GSNYYHRVSRVLSELQQAETQLSASQQNIRGKLKIVCPIELGQLFLGSILARFLKQYPDI
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCE
QINTELTNRRVDVIEEDIDMLFQIAEPKDPRLTCHAMVKADKMLLASPEYLAQFGTPKTP
EEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHCCCHHHHHHCCCCCCH
ADLAHHRAIRLVSAHIDGVWKIFDGKQWQVYEPVAQLTVNNVTLAREAAIEGLGIATVPT
HHHHHHHHHHHHHHHHCCEEEEECCCCEEEEHHHHHHEECCEEHHHHHHHCCCCHHHHHH
LIASEALASGKLVPVLEDYPMHQAKITLSYPQSAYLPRRYRVFIAFIYQHLVAQFGDQVL
HHHHHHHHCCCEEEECCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCHHHC
EIPDFININSSQV
CCCCEECCCCCCC
>Mature Secondary Structure
MDLNRVQIFAAVVEHGSFTAAATALGITKATVSRKVAELEENAGVQLLFRTTRALKLTEA
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHEEEECC
GSNYYHRVSRVLSELQQAETQLSASQQNIRGKLKIVCPIELGQLFLGSILARFLKQYPDI
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCE
QINTELTNRRVDVIEEDIDMLFQIAEPKDPRLTCHAMVKADKMLLASPEYLAQFGTPKTP
EEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHCCCHHHHHHCCCCCCH
ADLAHHRAIRLVSAHIDGVWKIFDGKQWQVYEPVAQLTVNNVTLAREAAIEGLGIATVPT
HHHHHHHHHHHHHHHHCCEEEEECCCCEEEEHHHHHHEECCEEHHHHHHHCCCCHHHHHH
LIASEALASGKLVPVLEDYPMHQAKITLSYPQSAYLPRRYRVFIAFIYQHLVAQFGDQVL
HHHHHHHHCCCEEEECCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCHHHC
EIPDFININSSQV
CCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]