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The map label for this gene is radC [C]

Identifier: 119773468

GI number: 119773468

Start: 394468

End: 395145

Strand: Direct

Name: radC [C]

Synonym: Sama_0327

Alternate gene names: 119773468

Gene position: 394468-395145 (Clockwise)

Preceding gene: 119773462

Following gene: 119773469

Centisome position: 9.16

GC content: 54.57

Gene sequence:

>678_bases
ATGGCAATTCGGGACTGGCCTGAGGGAGAGGGGCCACGTGAAAAATTATTGCAGCGGGGCGCGGCTCATTTATCGGACGC
AGAATTACTGGCAGTGCTGCTGCGAAATGGGGTTAGTGGTCAAAATGCGGTTGACCTGGCGAGGGAACTTATCGGTGAAT
TTGGTGGATTACGGCCTTTATTCAGTGCAACTAAGCAGCAGGTGTGTCGACTCCAGGGCCTGGGTCCGGTAAAATACGCC
CAGCTTCAGGCTTCTGCTGAGCTTGCCAGGCGACTGGCGGGTGAATCTTTGCAGCGGGGCGCTGTGCTGACAAGTCCGGA
TTTGACCCGGGATTACCTGAGATTTCAGTTGGCAGACAGAGCCTATGAGGTATTTGCCGTCTTGCTGCTCGACAGCCAAC
ACAGGGTCATCCAGTTTGTCGAATTGTTTCGAGGCACCATAGATGCAGCATCGGTATATCCCCGGGAGCTGGTGTCACTG
GTGTTGGAAAAGCGGGCGGCAGCGGTCATCGTCTGCCATAACCATCCGTCTGGGGTCGCTGAACCCAGCCAAGCCGACAG
ACGGATCACTGAAAGATTGAAAAATGCCTTGGCAACCATAGATGTATCCTTACTGGATCACATGGTTGTAGGGGACCGGG
AGATAGTCTCCTTTGCCGAGCGAGGGTGGATTGGATGA

Upstream 100 bases:

>100_bases
GGCGCTAACCATACCATAGACGCCGCCCCAAGAGTGAGCGGCCAAAGTCAAAATCTTAACATGCAAGCGGTACCTAAAGA
CGGGACACGGGAGGCAAGGG

Downstream 100 bases:

>100_bases
TCTTTACTTGATCTCCCATGGCCTTTCGTGTATAAAATGCGCCCTCTTTGTGCCTCGGGCGACGGCCATACGAGGTACAT
TAATGCTCGAGCGTTAAAAA

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MAIRDWPEGEGPREKLLQRGAAHLSDAELLAVLLRNGVSGQNAVDLARELIGEFGGLRPLFSATKQQVCRLQGLGPVKYA
QLQASAELARRLAGESLQRGAVLTSPDLTRDYLRFQLADRAYEVFAVLLLDSQHRVIQFVELFRGTIDAASVYPRELVSL
VLEKRAAAVIVCHNHPSGVAEPSQADRRITERLKNALATIDVSLLDHMVVGDREIVSFAERGWIG

Sequences:

>Translated_225_residues
MAIRDWPEGEGPREKLLQRGAAHLSDAELLAVLLRNGVSGQNAVDLARELIGEFGGLRPLFSATKQQVCRLQGLGPVKYA
QLQASAELARRLAGESLQRGAVLTSPDLTRDYLRFQLADRAYEVFAVLLLDSQHRVIQFVELFRGTIDAASVYPRELVSL
VLEKRAAAVIVCHNHPSGVAEPSQADRRITERLKNALATIDVSLLDHMVVGDREIVSFAERGWIG
>Mature_224_residues
AIRDWPEGEGPREKLLQRGAAHLSDAELLAVLLRNGVSGQNAVDLARELIGEFGGLRPLFSATKQQVCRLQGLGPVKYAQ
LQASAELARRLAGESLQRGAVLTSPDLTRDYLRFQLADRAYEVFAVLLLDSQHRVIQFVELFRGTIDAASVYPRELVSLV
LEKRAAAVIVCHNHPSGVAEPSQADRRITERLKNALATIDVSLLDHMVVGDREIVSFAERGWIG

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=213, Percent_Identity=46.0093896713615, Blast_Score=204, Evalue=4e-54,
Organism=Escherichia coli, GI2367100, Length=125, Percent_Identity=46.4, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1788997, Length=127, Percent_Identity=44.8818897637795, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1788312, Length=125, Percent_Identity=44, Blast_Score=109, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y327_SHEAM (A1S2D2)

Other databases:

- EMBL:   CP000507
- RefSeq:   YP_926208.1
- ProteinModelPortal:   A1S2D2
- SMR:   A1S2D2
- STRING:   A1S2D2
- GeneID:   4602583
- GenomeReviews:   CP000507_GR
- KEGG:   saz:Sama_0327
- eggNOG:   COG2003
- HOGENOM:   HBG751042
- OMA:   HAAMAHE
- PhylomeDB:   A1S2D2
- ProtClustDB:   PRK00024
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 24773; Mature: 24642

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIRDWPEGEGPREKLLQRGAAHLSDAELLAVLLRNGVSGQNAVDLARELIGEFGGLRPL
CCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHH
FSATKQQVCRLQGLGPVKYAQLQASAELARRLAGESLQRGAVLTSPDLTRDYLRFQLADR
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
AYEVFAVLLLDSQHRVIQFVELFRGTIDAASVYPRELVSLVLEKRAAAVIVCHNHPSGVA
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEEECCCCCCC
EPSQADRRITERLKNALATIDVSLLDHMVVGDREIVSFAERGWIG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
>Mature Secondary Structure 
AIRDWPEGEGPREKLLQRGAAHLSDAELLAVLLRNGVSGQNAVDLARELIGEFGGLRPL
CCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHH
FSATKQQVCRLQGLGPVKYAQLQASAELARRLAGESLQRGAVLTSPDLTRDYLRFQLADR
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
AYEVFAVLLLDSQHRVIQFVELFRGTIDAASVYPRELVSLVLEKRAAAVIVCHNHPSGVA
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEEECCCCCCC
EPSQADRRITERLKNALATIDVSLLDHMVVGDREIVSFAERGWIG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA